Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003580

Physical Location & Seq

Genomic Coordinates Forward (+)

7487867 .. 7488526

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g13600.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGATATAAGCCTTGAAATCTTGCAGGAGGCCGCCCACCCCCTCCACCAGCCCCAGTCTTCGGCTTCCACGTCGGACTACCCCCGCCCTCCGGCGCAGGCATCGGCTTCGGTATCGGCGCCGTTCAACCAAGAGACCCTTATGCAGCGGTTGCAGGCCTTGATCGAGGGCGCCAGGGAGAGCTGGACCTACGCCATCTTCTGGCAGTCGTCGTATGACATGTCGGGCACCTCCGTGCTTGGCTGGGGCGAGGGTTTCTACAAGGACGAGAGGACAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009651 GO:0009718 GO:0009719 GO:0009725 GO:0009753 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042440 GO:0042538 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043425 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0046283 GO:0046872 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

94

Amino Acids

10.38

Weight (kDa)

4.74

Isoelectric Point (pI)

67.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	47 - 90	3.5e-13	bHLH-MYC and R2R3-MYB transcription factors N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32640
fragaria_vesca	FvH4_1g13600 FvH4_1g13601 FvH4_4g17280 FvH4_5g22100 FvH4_6g24370 FvH4_6g25910
prunus_persica	Prupe.5G035400_v2.0.a1
pyrus_communis	pycom06g02850 pycom16g24430
rosa_chinensis	RchiOBHm_Chr7g0209751
rosa_laevigata	RLG00000003096 RLG00000008856 RLG00000036489 RLG00000036838
rosa_multiflora	Rmu_sc0000161.1_g000024 Rmu_sc0002616.1_g000020
rosa_roxburghii	Rroxscaffold_1G00006980
rosa_rugosa	Rorug05G0432900 Rorug07G0116000
rosa_samantha	Rh4DG124100 Rh5AG516700 Rh5AG518900 Rh5AG519400 Rh5BG540600 Rh5CG563400 Rh5DG551100 Rh5DG551400 Rh5DG551800 Rh7AG249600 Rh7BG243500 Rh7CG265600 Rh7DG255400
rosa_wichuraiana	Rw0G022750 Rw7G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	118, 170, 227
AccB7I	CCANNNNNTGG	1 cut(s)	201
AciI	CCGC	3 cut(s)	33, 85, 148
AcyI	GRCGYC	2 cut(s)	119, 171
AfiI	CCNNNNNNNGG	3 cut(s)	61, 91, 201
AflIII	ACRYGT	1 cut(s)	219
AgsI	TTSAA	2 cut(s)	17, 127
AjiI	CACGTC	1 cut(s)	72
AjnI	CCWGG	1 cut(s)	173
AleI	CACNNNNGTG	1 cut(s)	233
AluBI	AGCT	1 cut(s)	183
AluI	AGCT	1 cut(s)	183
Alw26I	GTCTC	1 cut(s)	128
AoxI	GGCC	2 cut(s)	30, 156
ApeKI	GCWGC	1 cut(s)	145
AspLEI	GCGC	3 cut(s)	97, 121, 173
AspS9I	GGNCC	1 cut(s)	186
AvaII	GGWCC	1 cut(s)	186
BaeGI	GKGCMC	1 cut(s)	230
BanI	GGYRCC	3 cut(s)	118, 170, 227
BbsI	GAAGAC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	1 cut(s)	203
BceAI	ACGGC	1 cut(s)	106
BcgI	CGANNNNNNTGC	2 cut(s)	90, 124
BciT130I	CCWGG	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	128
BfoI	RGCGCY	2 cut(s)	122, 174
BisI	GCNGC	2 cut(s)	33, 146
BlsI	GCNGC	2 cut(s)	34, 147
Bme1390I	CCNGG	1 cut(s)	175
Bme18I	GGWCC	1 cut(s)	186
BmgBI	CACGTC	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	186
BmiI	GGNNCC	3 cut(s)	120, 172, 229
BmrFI	CCNGG	1 cut(s)	175
BmrI	ACTGGG	1 cut(s)	49
BmsI	GCATC	1 cut(s)	110
BmuI	ACTGGG	1 cut(s)	49
BpiI	GAAGAC	1 cut(s)	51
BsaHI	GRCGYC	2 cut(s)	119, 171
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 91, 201
Bse1I	ACTGG	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	175
BseDI	CCNNGG	1 cut(s)	174
BseLI	CCNNNNNNNGG	3 cut(s)	61, 91, 201
BseNI	ACTGG	1 cut(s)	55
BseSI	GKGCMC	1 cut(s)	230
BseXI	GCAGC	1 cut(s)	157
BseYI	CCCAGC	1 cut(s)	243
BshFI	GGCC	2 cut(s)	32, 158
BshNI	GGYRCC	3 cut(s)	118, 170, 227
BsiSI	CCGG	1 cut(s)	92
BslI	CCNNNNNNNGG	3 cut(s)	61, 91, 201
BsmAI	GTCTC	1 cut(s)	128
BsnI	GGCC	2 cut(s)	32, 158
Bso31I	GGTCTC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp143I	GATC	1 cut(s)	162
BspACI	CCGC	3 cut(s)	33, 85, 148
BspANI	GGCC	2 cut(s)	32, 158
BspLI	GGNNCC	3 cut(s)	120, 172, 229
BspT107I	GGYRCC	3 cut(s)	118, 170, 227
BspTNI	GGTCTC	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	1 cut(s)	162
BssNI	GRCGYC	2 cut(s)	119, 171
Bst2UI	CCWGG	1 cut(s)	175
BstACI	GRCGYC	2 cut(s)	119, 171
BstAPI	GCANNNNNTGC	1 cut(s)	151
BstC8I	GCNNGC	2 cut(s)	99, 156
BstH2I	RGCGCY	2 cut(s)	122, 174
BstHHI	GCGC	3 cut(s)	97, 121, 173
BstKTI	GATC	1 cut(s)	165
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	1 cut(s)	162
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstNI	CCWGG	1 cut(s)	175
BstNSI	RCATGY	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	173
BstSLI	GKGCMC	1 cut(s)	230
BstV1I	GCAGC	1 cut(s)	157
BstV2I	GAAGAC	1 cut(s)	51
BsuRI	GGCC	2 cut(s)	32, 158
BtrI	CACGTC	1 cut(s)	72
Cac8I	GCNNGC	2 cut(s)	99, 156
CfoI	GCGC	3 cut(s)	97, 121, 173
Cfr13I	GGNCC	1 cut(s)	186
CviAII	CATG	1 cut(s)	220
CviJI	RGCY	8 cut(s)	12, 32, 52, 65, 107, 158, 183, 243
CviKI_1	RGCY	8 cut(s)	12, 32, 52, 65, 107, 158, 183, 243
DinI	GGCGCC	2 cut(s)	120, 172
DpnI	GATC	1 cut(s)	164
DpnII	GATC	1 cut(s)	162
Eco147I	AGGCCT	1 cut(s)	158
Eco31I	GGTCTC	1 cut(s)	128
Eco47I	GGWCC	1 cut(s)	186
EcoRII	CCWGG	1 cut(s)	173
EgeI	GGCGCC	2 cut(s)	120, 172
EheI	GGCGCC	2 cut(s)	120, 172
FaeI	CATG	1 cut(s)	223
FaiI	YATR	4 cut(s)	8, 143, 216, 221
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FatI	CATG	1 cut(s)	219
FauI	CCCGC	1 cut(s)	92
Fnu4HI	GCNGC	2 cut(s)	33, 146
Fsp4HI	GCNGC	2 cut(s)	33, 146
GlaI	GCGC	3 cut(s)	96, 120, 172
GluI	GCNGC	2 cut(s)	33, 146
GsaI	CCCAGC	1 cut(s)	247
HaeII	RGCGCY	2 cut(s)	122, 174
HaeIII	GGCC	2 cut(s)	32, 158
HapII	CCGG	1 cut(s)	92
HhaI	GCGC	3 cut(s)	97, 121, 173
Hin1I	GRCGYC	2 cut(s)	119, 171
Hin1II	CATG	1 cut(s)	223
Hin6I	GCGC	3 cut(s)	95, 119, 171
HinP1I	GCGC	3 cut(s)	95, 119, 171
HpaII	CCGG	1 cut(s)	92
Hpy188I	TCNGA	1 cut(s)	76
Hpy99I	CGWCG	2 cut(s)	76, 214
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	3 cut(s)	25, 145, 154
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpySE526I	ACGT	1 cut(s)	71
Hsp92I	GRCGYC	2 cut(s)	119, 171
Hsp92II	CATG	1 cut(s)	223
HspAI	GCGC	3 cut(s)	95, 119, 171
KasI	GGCGCC	2 cut(s)	118, 170
Kzo9I	GATC	1 cut(s)	162
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	110
MaeII	ACGT	1 cut(s)	71
MalI	GATC	1 cut(s)	164
MboI	GATC	1 cut(s)	162
MboII	GAAGA	2 cut(s)	51, 190
MhlI	GDGCHC	1 cut(s)	230
Mly113I	GGCGCC	2 cut(s)	119, 171
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	7 cut(s)	22, 53, 99, 160, 241, 244, 264
MslI	CAYNNNNRTG	1 cut(s)	233
MspA1I	CMGCKG	1 cut(s)	148
MspI	CCGG	1 cut(s)	92
MspR9I	CCNGG	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	175
MwoI	GCNNNNNNNGC	1 cut(s)	151
NarI	GGCGCC	2 cut(s)	119, 171
NdeII	GATC	1 cut(s)	162
NlaIII	CATG	1 cut(s)	223
NlaIV	GGNNCC	3 cut(s)	120, 172, 229
NspI	RCATGY	1 cut(s)	223
OliI	CACNNNNGTG	1 cut(s)	233
PceI	AGGCCT	1 cut(s)	158
PciI	ACATGT	1 cut(s)	219
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PflMI	CCANNNNNTGG	1 cut(s)	201
PkrI	GCNGC	2 cut(s)	34, 147
PluTI	GGCGCC	2 cut(s)	122, 174
PscI	ACATGT	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	173
PspFI	CCCAGC	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	173
PspN4I	GGNNCC	3 cut(s)	120, 172, 229
PspPI	GGNCC	1 cut(s)	186
RseI	CAYNNNNRTG	1 cut(s)	233
SatI	GCNGC	2 cut(s)	33, 146
Sau3AI	GATC	1 cut(s)	162
Sau96I	GGNCC	1 cut(s)	186
ScrFI	CCNGG	1 cut(s)	175
SduI	GDGCHC	1 cut(s)	230
SetI	ASST	4 cut(s)	74, 185, 191, 233
SfaNI	GCATC	1 cut(s)	110
SfoI	GGCGCC	2 cut(s)	120, 172
SinI	GGWCC	1 cut(s)	186
SmiMI	CAYNNNNRTG	1 cut(s)	233
SseBI	AGGCCT	1 cut(s)	158
SsiI	CCGC	3 cut(s)	33, 85, 148
SspDI	GGCGCC	2 cut(s)	118, 170
StuI	AGGCCT	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	173
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	1 cut(s)	165
TauI	GCSGC	1 cut(s)	35
TseI	GCWGC	1 cut(s)	145
TspGWI	ACGGA	1 cut(s)	223
Van91I	CCANNNNNTGG	1 cut(s)	201
VpaK11BI	GGWCC	1 cut(s)	186
XceI	RCATGY	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.