RLG00000003097

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0015976
Physical Location & Seq
Forward (+)
44385557 .. 44385943
387 bp
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UTR
Exon/CDS
Intron
RLM00000003097

Sequence Viewer

Length: 387 bp
ATGAGCCTCAATTGCTTGACTTGCCAGGTTCTGCAGAGGACGGATTCTTCGGGCTCCGGAAGGAACTATAAACAAGGCAAGGCTCACAAGGCATGTAATAGGAAGCTATGCTGTGTAAACATGGACAGAAGCTGGTCCGGAAACCTAACTCCGCCGCCTTATTATGAGGCAATAGATCATAGGTCAGCTCCTTTGTTGGGTGAGCATGGCAAGAAGAAGAAGAATGCCCAAAAGGCGGGGCATCGCAGGCTTTGTAGCACAGGTGGAGTTGCATATGAAGGGAGCACTGAACCAAAGTTGGTTAGGAGCGCTGGAATGAGAAGGGATTGGAGCTTTGAGAATTTGGGACGGCTCAGAAAAGAAAGCAAAGGGAGGAACTTATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.36

Weight (kDa)

9.99

Isoelectric Point (pI)

49.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015976)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35215 AT5G46770
fragaria_vesca FvH4_5g22090
malus_domestica MD16G1274300.v1.1
prunus_persica Prupe.5G036400_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0209741
rosa_laevigata RLG00000003097
rosa_multiflora Rmu_sc0002616.1_g000018
rosa_roxburghii Rroxscaffold_3G00249110
rosa_rugosa Rorug07G0116000
rosa_samantha Rh7AG249500 Rh7BG243400 Rh7CG265500 Rh7DG255300
rosa_wichuraiana Rw7G021150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 56, 137
AciI CCGC 3 cut(s) 152, 155, 236
AcsI RAATTY 1 cut(s) 340
AfeI AGCGCT 1 cut(s) 310
AfiI CCNNNNNNNGG 2 cut(s) 197, 235
AjnI CCWGG 1 cut(s) 24
AluBI AGCT 4 cut(s) 106, 132, 188, 333
AluI AGCT 4 cut(s) 106, 132, 188, 333
Alw21I GWGCWC 1 cut(s) 287
AlwNI CAGNNNCTG 2 cut(s) 31, 132
Aor13HI TCCGGA 2 cut(s) 56, 137
Aor51HI AGCGCT 1 cut(s) 310
ApoI RAATTY 1 cut(s) 340
ArsI GACNNNNNNTTYG 2 cut(s) 31, 63
AspLEI GCGC 1 cut(s) 311
AspS9I GGNCC 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 212
AvaII GGWCC 1 cut(s) 135
BanII GRGCYC 1 cut(s) 56
Bbv12I GWGCWC 1 cut(s) 287
BceAI ACGGC 1 cut(s) 365
BciT130I CCWGG 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 32
BfoI RGCGCY 1 cut(s) 312
BglI GCCNNNNNGGC 1 cut(s) 233
BisI GCNGC 1 cut(s) 155
BlsI GCNGC 1 cut(s) 156
Bme1390I CCNGG 1 cut(s) 26
Bme18I GGWCC 1 cut(s) 135
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 1 cut(s) 55
BmrFI CCNGG 1 cut(s) 26
BmsI GCATC 1 cut(s) 250
BsaWI WCCGGW 2 cut(s) 56, 137
Bsc4I CCNNNNNNNGG 2 cut(s) 197, 235
BseAI TCCGGA 2 cut(s) 56, 137
BseBI CCWGG 1 cut(s) 26
BseLI CCNNNNNNNGG 2 cut(s) 197, 235
BseMII CTCAG 1 cut(s) 367
BsiHKAI GWGCWC 1 cut(s) 287
BsiSI CCGG 2 cut(s) 57, 138
BslFI GGGAC 1 cut(s) 360
BslI CCNNNNNNNGG 2 cut(s) 197, 235
BsmFI GGGAC 1 cut(s) 360
BsmI GAATGC 1 cut(s) 229
Bsp1286I GDGCHC 2 cut(s) 56, 287
Bsp13I TCCGGA 2 cut(s) 56, 137
Bsp143I GATC 1 cut(s) 175
BspACI CCGC 3 cut(s) 152, 155, 236
BspCNI CTCAG 1 cut(s) 366
BspEI TCCGGA 2 cut(s) 56, 137
BspLI GGNNCC 1 cut(s) 55
BspMAI CTGCAG 1 cut(s) 36
BssMI GATC 1 cut(s) 175
Bst2UI CCWGG 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 248
BstDEI CTNAG 1 cut(s) 353
BstH2I RGCGCY 1 cut(s) 312
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 1 cut(s) 178
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 5 cut(s) 12, 21, 89, 233, 247
BstNI CCWGG 1 cut(s) 26
BstNSI RCATGY 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 24
BstSFI CTRYAG 1 cut(s) 32
BtgZI GCGATG 1 cut(s) 227
BtsIMutI CAGTG 1 cut(s) 285
Cac8I GCNNGC 1 cut(s) 248
CaiI CAGNNNCTG 2 cut(s) 31, 132
CfoI GCGC 1 cut(s) 311
Cfr13I GGNCC 1 cut(s) 135
CviAII CATG 3 cut(s) 93, 121, 206
CviJI RGCY 9 cut(s) 6, 54, 83, 106, 132, 188, 250, 333, 352
CviKI_1 RGCY 9 cut(s) 6, 54, 83, 106, 132, 188, 250, 333, 352
DdeI CTNAG 1 cut(s) 353
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
EciI GGCGGA 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 56
Eco47I GGWCC 1 cut(s) 135
Eco47III AGCGCT 1 cut(s) 310
EcoRII CCWGG 1 cut(s) 24
EcoT38I GRGCYC 1 cut(s) 56
FaeI CATG 3 cut(s) 96, 124, 209
FaqI GGGAC 1 cut(s) 360
FatI CATG 3 cut(s) 92, 120, 205
FauI CCCGC 1 cut(s) 229
FauNDI CATATG 1 cut(s) 274
Fnu4HI GCNGC 1 cut(s) 155
FriOI GRGCYC 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 155
GlaI GCGC 1 cut(s) 310
GluI GCNGC 1 cut(s) 155
HaeII RGCGCY 1 cut(s) 312
HapII CCGG 2 cut(s) 57, 138
HhaI GCGC 1 cut(s) 311
Hin1II CATG 3 cut(s) 96, 124, 209
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HinfI GANTC 1 cut(s) 44
HpaII CCGG 2 cut(s) 57, 138
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 1 cut(s) 356
Hpy188III TCNNGA 2 cut(s) 57, 138
Hpy8I GTNNAC 1 cut(s) 118
HpyAV CCTTC 3 cut(s) 54, 272, 315
HpyCH4V TGCA 2 cut(s) 34, 272
HpyF10VI GCNNNNNNNGC 5 cut(s) 12, 21, 89, 233, 247
HpyF3I CTNAG 1 cut(s) 353
Hsp92II CATG 3 cut(s) 96, 124, 209
HspAI GCGC 1 cut(s) 309
Kpn2I TCCGGA 2 cut(s) 56, 137
Kzo9I GATC 1 cut(s) 175
LmnI GCTCC 5 cut(s) 59, 193, 282, 306, 330
LpnPI CCDG 8 cut(s) 11, 38, 70, 118, 151, 232, 246, 297
LweI GCATC 1 cut(s) 250
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MboII GAAGA 4 cut(s) 39, 226, 229, 232
MfeI CAATTG 1 cut(s) 10
MhlI GDGCHC 2 cut(s) 56, 287
MluCI AATT 2 cut(s) 10, 340
MnlI CCTC 4 cut(s) 17, 30, 160, 366
MroI TCCGGA 2 cut(s) 56, 137
MseI TTAA 1 cut(s) 385
MspI CCGG 2 cut(s) 57, 138
MspR9I CCNGG 1 cut(s) 26
MunI CAATTG 1 cut(s) 10
Mva1269I GAATGC 1 cut(s) 229
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 5 cut(s) 12, 21, 89, 233, 247
NdeI CATATG 1 cut(s) 274
NdeII GATC 1 cut(s) 175
NlaIII CATG 3 cut(s) 96, 124, 209
NlaIV GGNNCC 1 cut(s) 55
NspI RCATGY 1 cut(s) 96
PctI GAATGC 1 cut(s) 229
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 1 cut(s) 135
PstI CTGCAG 1 cut(s) 36
PstNI CAGNNNCTG 2 cut(s) 31, 132
SaqAI TTAA 1 cut(s) 385
SatI GCNGC 1 cut(s) 155
Sau3AI GATC 1 cut(s) 175
Sau96I GGNCC 1 cut(s) 135
ScrFI CCNGG 1 cut(s) 26
SduI GDGCHC 2 cut(s) 56, 287
SetI ASST 8 cut(s) 30, 108, 134, 147, 185, 190, 265, 335
SfaNI GCATC 1 cut(s) 250
SfcI CTRYAG 1 cut(s) 32
SinI GGWCC 1 cut(s) 135
Sse9I AATT 2 cut(s) 10, 340
SsiI CCGC 3 cut(s) 152, 155, 236
StyD4I CCNGG 1 cut(s) 24
TasI AATT 2 cut(s) 10, 340
TauI GCSGC 1 cut(s) 157
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 1 cut(s) 385
Tru9I TTAA 1 cut(s) 385
TscAI CASTG 1 cut(s) 292
TspDTI ATGAA 1 cut(s) 291
TspGWI ACGGA 1 cut(s) 56
TspRI CASTG 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 135
XapI RAATTY 1 cut(s) 340
XceI RCATGY 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.