Rmu_sc0002616.1_g000018

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002616.1
OG0015976
Physical Location & Seq
Reverse (-)
58030 .. 58413
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002616.1_g000018.1.cds

Sequence Viewer

Length: 384 bp
atgagcctcaattgcttgacttgccaggttctgcagaggacggattcttcgggctccgaaaggaactataaacaaggcaaggctcagaaggcatgtaataggaagctatgctgtgtaaacatggacagaagctggtccggaaacctaactccgccgccttattatgagacaatagataggtcagctcctttgttgggtgagaatggcaagaagaagaagaatgcccaaaaggcggggcatcgccggctttgtagcacaggtggagttgcatatgaagggagcactgaaccaaagttggttaggagcgctggaatgagaagggattggagctttgagaatttgggacggctcagaaaagaaagcaaagggaggaacttatattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.29

Weight (kDa)

9.9

Isoelectric Point (pI)

49.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015976)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35215 AT5G46770
fragaria_vesca FvH4_5g22090
malus_domestica MD16G1274300.v1.1
prunus_persica Prupe.5G036400_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0209741
rosa_laevigata RLG00000003097
rosa_multiflora Rmu_sc0002616.1_g000018
rosa_roxburghii Rroxscaffold_3G00249110
rosa_rugosa Rorug07G0116000
rosa_samantha Rh7AG249500 Rh7BG243400 Rh7CG265500 Rh7DG255300
rosa_wichuraiana Rw7G021150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 137
AciI CCGC 3 cut(s) 152, 155, 233
AcsI RAATTY 1 cut(s) 337
AfeI AGCGCT 1 cut(s) 307
AfiI CCNNNNNNNGG 2 cut(s) 194, 232
AjnI CCWGG 1 cut(s) 24
AluBI AGCT 4 cut(s) 106, 132, 185, 330
AluI AGCT 4 cut(s) 106, 132, 185, 330
Alw21I GWGCWC 1 cut(s) 284
Alw26I GTCTC 1 cut(s) 161
AlwNI CAGNNNCTG 2 cut(s) 31, 132
Aor13HI TCCGGA 1 cut(s) 137
Aor51HI AGCGCT 1 cut(s) 307
ApoI RAATTY 1 cut(s) 337
ArsI GACNNNNNNTTYG 2 cut(s) 31, 63
AspLEI GCGC 1 cut(s) 308
AspS9I GGNCC 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 209
AvaII GGWCC 1 cut(s) 135
BanII GRGCYC 1 cut(s) 56
Bbv12I GWGCWC 1 cut(s) 284
BceAI ACGGC 1 cut(s) 362
BciT130I CCWGG 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 32
BfoI RGCGCY 1 cut(s) 309
BglI GCCNNNNNGGC 1 cut(s) 230
BisI GCNGC 1 cut(s) 155
BlsI GCNGC 1 cut(s) 156
Bme1390I CCNGG 1 cut(s) 26
Bme18I GGWCC 1 cut(s) 135
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 1 cut(s) 55
BmrFI CCNGG 1 cut(s) 26
BmsI GCATC 1 cut(s) 247
BsaWI WCCGGW 1 cut(s) 137
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 232
Bse118I RCCGGY 1 cut(s) 243
BseAI TCCGGA 1 cut(s) 137
BseBI CCWGG 1 cut(s) 26
BseLI CCNNNNNNNGG 2 cut(s) 194, 232
BseMII CTCAG 2 cut(s) 98, 364
BsiHKAI GWGCWC 1 cut(s) 284
BsiSI CCGG 2 cut(s) 138, 244
BslFI GGGAC 1 cut(s) 357
BslI CCNNNNNNNGG 2 cut(s) 194, 232
BsmAI GTCTC 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 357
BsmI GAATGC 1 cut(s) 226
Bsp1286I GDGCHC 2 cut(s) 56, 284
Bsp13I TCCGGA 1 cut(s) 137
BspACI CCGC 3 cut(s) 152, 155, 233
BspCNI CTCAG 2 cut(s) 97, 363
BspEI TCCGGA 1 cut(s) 137
BspLI GGNNCC 1 cut(s) 55
BspMAI CTGCAG 1 cut(s) 36
BsrFI RCCGGY 1 cut(s) 243
BssAI RCCGGY 1 cut(s) 243
Bst2UI CCWGG 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 245
BstDEI CTNAG 2 cut(s) 84, 350
BstH2I RGCGCY 1 cut(s) 309
BstHHI GCGC 1 cut(s) 308
BstMAI GTCTC 1 cut(s) 161
BstMWI GCNNNNNNNGC 5 cut(s) 12, 21, 89, 230, 244
BstNI CCWGG 1 cut(s) 26
BstNSI RCATGY 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 24
BstSFI CTRYAG 1 cut(s) 32
BtgZI GCGATG 1 cut(s) 224
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 1 cut(s) 245
CaiI CAGNNNCTG 2 cut(s) 31, 132
CfoI GCGC 1 cut(s) 308
Cfr10I RCCGGY 1 cut(s) 243
Cfr13I GGNCC 1 cut(s) 135
CviAII CATG 2 cut(s) 93, 121
CviJI RGCY 9 cut(s) 6, 54, 83, 106, 132, 185, 247, 330, 349
CviKI_1 RGCY 9 cut(s) 6, 54, 83, 106, 132, 185, 247, 330, 349
DdeI CTNAG 2 cut(s) 84, 350
EciI GGCGGA 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 56
Eco47I GGWCC 1 cut(s) 135
Eco47III AGCGCT 1 cut(s) 307
EcoRII CCWGG 1 cut(s) 24
EcoT38I GRGCYC 1 cut(s) 56
FaeI CATG 2 cut(s) 96, 124
FaiI YATR 8 cut(s) 69, 94, 109, 122, 165, 271, 273, 379
FaqI GGGAC 1 cut(s) 357
FatI CATG 2 cut(s) 92, 120
FauI CCCGC 1 cut(s) 226
FauNDI CATATG 1 cut(s) 271
Fnu4HI GCNGC 1 cut(s) 155
FriOI GRGCYC 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 155
GlaI GCGC 1 cut(s) 307
GluI GCNGC 1 cut(s) 155
HaeII RGCGCY 1 cut(s) 309
HapII CCGG 2 cut(s) 138, 244
HhaI GCGC 1 cut(s) 308
Hin1II CATG 2 cut(s) 96, 124
Hin6I GCGC 1 cut(s) 306
HinP1I GCGC 1 cut(s) 306
HinfI GANTC 1 cut(s) 44
HpaII CCGG 2 cut(s) 138, 244
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 3 cut(s) 58, 87, 353
Hpy188III TCNNGA 1 cut(s) 138
Hpy8I GTNNAC 1 cut(s) 118
HpyAV CCTTC 3 cut(s) 82, 269, 312
HpyCH4V TGCA 2 cut(s) 34, 269
HpyF10VI GCNNNNNNNGC 5 cut(s) 12, 21, 89, 230, 244
HpyF3I CTNAG 2 cut(s) 84, 350
Hsp92II CATG 2 cut(s) 96, 124
HspAI GCGC 1 cut(s) 306
Kpn2I TCCGGA 1 cut(s) 137
KroI GCCGGC 1 cut(s) 243
KroNI GCCGGC 1 cut(s) 245
LmnI GCTCC 5 cut(s) 59, 190, 279, 303, 327
LpnPI CCDG 7 cut(s) 11, 38, 118, 151, 243, 257, 294
LweI GCATC 1 cut(s) 247
MboII GAAGA 4 cut(s) 39, 223, 226, 229
MfeI CAATTG 1 cut(s) 10
MhlI GDGCHC 2 cut(s) 56, 284
MluCI AATT 2 cut(s) 10, 337
MnlI CCTC 3 cut(s) 17, 30, 363
MroI TCCGGA 1 cut(s) 137
MroNI GCCGGC 1 cut(s) 243
MseI TTAA 1 cut(s) 382
MspI CCGG 2 cut(s) 138, 244
MspR9I CCNGG 1 cut(s) 26
MunI CAATTG 1 cut(s) 10
Mva1269I GAATGC 1 cut(s) 226
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 5 cut(s) 12, 21, 89, 230, 244
NaeI GCCGGC 1 cut(s) 245
NdeI CATATG 1 cut(s) 271
NgoMIV GCCGGC 1 cut(s) 243
NlaIII CATG 2 cut(s) 96, 124
NlaIV GGNNCC 1 cut(s) 55
NspI RCATGY 1 cut(s) 96
PctI GAATGC 1 cut(s) 226
PdiI GCCGGC 1 cut(s) 245
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 1 cut(s) 135
PstI CTGCAG 1 cut(s) 36
PstNI CAGNNNCTG 2 cut(s) 31, 132
SaqAI TTAA 1 cut(s) 382
SatI GCNGC 1 cut(s) 155
Sau96I GGNCC 1 cut(s) 135
ScrFI CCNGG 1 cut(s) 26
SduI GDGCHC 2 cut(s) 56, 284
SetI ASST 8 cut(s) 30, 108, 134, 147, 182, 187, 262, 332
SfaNI GCATC 1 cut(s) 247
SfcI CTRYAG 1 cut(s) 32
SinI GGWCC 1 cut(s) 135
Sse9I AATT 2 cut(s) 10, 337
SsiI CCGC 3 cut(s) 152, 155, 233
StyD4I CCNGG 1 cut(s) 24
TasI AATT 2 cut(s) 10, 337
TauI GCSGC 1 cut(s) 157
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 1 cut(s) 382
Tru9I TTAA 1 cut(s) 382
TscAI CASTG 1 cut(s) 289
TspDTI ATGAA 1 cut(s) 288
TspGWI ACGGA 1 cut(s) 56
TspRI CASTG 1 cut(s) 289
VpaK11BI GGWCC 1 cut(s) 135
XapI RAATTY 1 cut(s) 337
XceI RCATGY 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.