FvH4_5g23190

Protein of unknown function (DUF760)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0014092
Physical Location & Seq
Reverse (-)
14559200 .. 14563394
4195 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g23190.t1

Sequence Viewer

Length: 1218 bp
ATGCAGGTCTCAGGTGTTATCGGCGACGTTTCACTCGTAATTCCCTCCGGCGGAGGTCTTCGTTCGCCGGAATTCCGACACTTCCACACCCACACCTACCCACACTCTCTCTCCGATTCCAAGTCTTCCATTTCCGGTGGATTTTTCAGAAGCTGTCTACCCAAGGTTGGAAATGGACTGTATAAGTGCCGAGCAAGAGGTTTGATTGTGAGAGCATCGGAGGATTCTAGTGCTAATTTGGTGCCGGTTGCTCCTCTTCAGTTTGAATCCCCTGCTGGCCAGCTTTTGGGCCAAATACTACAAACACATCCACATCTACTGCCTGCAGCTGTTGATCAGCAGCTCGAGAAACTTCAAACTGAGAGAGATGCCCAAGAAGAAGAATCTCCAGCATCTAAAGGTCCCCTCTACAAGAGAATAGCTGAGGTCAAAGAGAAAGAAAGGCGAGCGGCACTGCAAGAGATAATATACTGCTTGATAGTGCAAAAGTTTGTGGAGAATGAAATATCAATGATCCCCAAAATATCAGCAACCTCGGATCCTACCGGCAGAGTGGATTTTTGGCCAAACCAAGAACAAAAACTAGAATCTGTTCACTCTTCTGAAGCATTTGAGATGATACAGAGCCACTTGTCTCTTGTGCTTGGAGAACGACTTGTCGGTGTGGGGCCCCTTTCTTCCTTGGTTGAGATTAGCAAAATAAAACTTGGGAAGCTGTATGCTGCTTCCATAATGTATGGATATTTTCTCAAAAGAGTTGATCAGCGGTTTCAGCTTGAGAGGACCATGAACATCCTTCCGAAACGTGTTACTCAGGATCCGGATCCGGCACCAGCAAACCAGCTCTGGGATCCTGATTCCTTGTTCAGAATACCTCCCGACGGTGGTGATGAAGCAGGCTTCATAGATAAAGAGGAAAGCAAGTCTTATCGACTGAGATCCTATGTGATGTACTTGGATGCAGAGACTCTTCAAAGATATGCTACTATAAGGTCAAAGGAAGCTATTTCTTTGATTGAAAGCCAAACGCAAGCCCTGTTTGGGAAACCTGACATCAGGATCGCCGGGGATGGTTCAATCGATACATCTAACGATGAAGTGATTTCGCTTACATTCTCCGGATTAACAATGCTAGTCTTGGAAGCGGTTGCATTTGGATCATTCCTGTGGGATGCTGAAACCGATGTAGAATCCAAATATAACTTTGTCAAAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF760

Protein Analysis

406

Amino Acids

44.98

Weight (kDa)

5.53

Isoelectric Point (pI)

48.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF760 PF05542 136 - 263 2e-20 Protein of unknown function (DUF760)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32160
fragaria_vesca FvH4_5g23190
malus_domestica MD06G1027100.v1.1 MD16G1279100.v1.1
prunus_persica Prupe.5G027900_v2.0.a1 Prupe.5G027900_v2.0.a1
pyrus_communis pycom06g02220
rosa_chinensis RchiOBHm_Chr7g0212111
rosa_laevigata RLG00000002934
rosa_multiflora Rmu_sc0002283.1_g000040
rosa_roxburghii Rroxscaffold_3G00247130
rosa_rugosa Rorug07G0131000
rosa_samantha Rh7AG264000 Rh7BG257700 Rh7CG280500 Rh7DG270500
rosa_wichuraiana Rw7G022530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 241, 829
AccB7I CCANNNNNTGG 1 cut(s) 286
AccBSI CCGCTC 1 cut(s) 449
AccI GTMKAC 1 cut(s) 157
AccIII TCCGGA 2 cut(s) 820, 1118
AciI CCGC 4 cut(s) 51, 449, 766, 1145
AcoI YGGCCR 2 cut(s) 277, 563
AcsI RAATTY 1 cut(s) 71
AcuI CTGAAG 2 cut(s) 242, 624
AfaI GTAC 1 cut(s) 953
AfiI CCNNNNNNNGG 7 cut(s) 50, 167, 286, 847, 881, 884, 1041
AflIII ACRYGT 1 cut(s) 805
AgsI TTSAA 5 cut(s) 266, 356, 974, 1019, 1077
Alw26I GTCTC 3 cut(s) 13, 639, 959
AlwNI CAGNNNCTG 1 cut(s) 153
Ama87I CYCGRG 1 cut(s) 344
Aor13HI TCCGGA 2 cut(s) 820, 1118
AoxI GGCC 4 cut(s) 277, 289, 563, 668
ApaI GGGCCC 1 cut(s) 672
ApeKI GCWGC 3 cut(s) 326, 340, 722
ApoI RAATTY 1 cut(s) 71
Asp700I GAANNNNTTC 1 cut(s) 591
AspS9I GGNCC 5 cut(s) 289, 401, 668, 669, 783
AsuC2I CCSGG 1 cut(s) 1066
AsuHPI GGTGA 1 cut(s) 899
AvaI CYCGRG 1 cut(s) 344
AvaII GGWCC 2 cut(s) 401, 783
BaeGI GKGCMC 1 cut(s) 672
BalI TGGCCA 2 cut(s) 279, 565
BamHI GGATCC 4 cut(s) 538, 817, 823, 850
BanI GGYRCC 2 cut(s) 241, 829
BanII GRGCYC 1 cut(s) 672
BbsI GAAGAC 2 cut(s) 50, 117
BbvCI CCTCAGC 1 cut(s) 423
BbvI GCAGC 3 cut(s) 338, 352, 709
BccI CCATC 1 cut(s) 1064
BclI TGATCA 2 cut(s) 334, 760
BcnI CCSGG 1 cut(s) 1066
BcoDI GTCTC 3 cut(s) 13, 639, 959
BfaI CTAG 3 cut(s) 228, 584, 1133
BfmI CTRYAG 1 cut(s) 324
BisI GCNGC 4 cut(s) 327, 341, 450, 723
BlsI GCNGC 4 cut(s) 328, 342, 451, 724
Bme1390I CCNGG 1 cut(s) 1066
Bme18I GGWCC 2 cut(s) 401, 783
BmeT110I CYCGRG 1 cut(s) 344
BmgT120I GGNCC 5 cut(s) 289, 401, 668, 669, 783
BmrFI CCNGG 1 cut(s) 1066
BmsI GCATC 5 cut(s) 224, 358, 401, 949, 1162
BpiI GAAGAC 2 cut(s) 50, 117
BpmI CTGGAG 1 cut(s) 372
Bpu10I CCTNAGC 1 cut(s) 423
BpuEI CTTGAG 1 cut(s) 797
BpuMI CCSGG 1 cut(s) 1066
Bsa29I ATCGAT 1 cut(s) 1080
BsaBI GATNNNNATC 1 cut(s) 822
BsaI GGTCTC 1 cut(s) 13
BsaJI CCNNGG 4 cut(s) 162, 534, 681, 1065
BsaWI WCCGGW 3 cut(s) 134, 820, 1118
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 7 cut(s) 50, 167, 286, 847, 881, 884, 1041
Bse118I RCCGGY 2 cut(s) 244, 545
Bse8I GATNNNNATC 1 cut(s) 822
BseAI TCCGGA 2 cut(s) 820, 1118
BseCI ATCGAT 1 cut(s) 1080
BseDI CCNNGG 4 cut(s) 162, 534, 681, 1065
BseGI GGATG 5 cut(s) 307, 792, 964, 1075, 1177
BseJI GATNNNNATC 1 cut(s) 822
BseLI CCNNNNNNNGG 7 cut(s) 50, 167, 286, 847, 881, 884, 1041
BseMII CTCAG 5 cut(s) 24, 351, 414, 827, 926
BseRI GAGGAG 1 cut(s) 243
BseSI GKGCMC 1 cut(s) 672
BseXI GCAGC 3 cut(s) 338, 352, 709
BshFI GGCC 4 cut(s) 279, 291, 565, 670
BshNI GGYRCC 2 cut(s) 241, 829
BshVI ATCGAT 1 cut(s) 1080
BsiHKCI CYCGRG 1 cut(s) 344
BsiSI CCGG 9 cut(s) 48, 68, 135, 245, 546, 821, 827, 1065, 1119
BslFI GGGAC 1 cut(s) 387
BslI CCNNNNNNNGG 7 cut(s) 50, 167, 286, 847, 881, 884, 1041
BsmAI GTCTC 3 cut(s) 13, 639, 959
BsmFI GGGAC 1 cut(s) 387
BsnI GGCC 4 cut(s) 279, 291, 565, 670
Bso31I GGTCTC 1 cut(s) 13
BsoBI CYCGRG 1 cut(s) 344
Bsp120I GGGCCC 1 cut(s) 668
Bsp1286I GDGCHC 1 cut(s) 672
Bsp13I TCCGGA 2 cut(s) 820, 1118
BspACI CCGC 4 cut(s) 51, 449, 766, 1145
BspANI GGCC 4 cut(s) 279, 291, 565, 670
BspCNI CTCAG 5 cut(s) 23, 352, 415, 826, 927
BspDI ATCGAT 1 cut(s) 1080
BspEI TCCGGA 2 cut(s) 820, 1118
BspMAI CTGCAG 1 cut(s) 328
BspT107I GGYRCC 2 cut(s) 241, 829
BspTNI GGTCTC 1 cut(s) 13
BsrBI CCGCTC 1 cut(s) 449
BsrFI RCCGGY 2 cut(s) 244, 545
BssAI RCCGGY 2 cut(s) 244, 545
BssECI CCNNGG 4 cut(s) 162, 534, 681, 1065
BssT1I CCWWGG 2 cut(s) 162, 681
Bst4CI ACNGT 2 cut(s) 180, 884
Bst6I CTCTTC 3 cut(s) 261, 604, 975
BstC8I GCNNGC 6 cut(s) 277, 281, 324, 447, 898, 1032
BstDEI CTNAG 5 cut(s) 10, 360, 423, 813, 935
BstF5I GGATG 5 cut(s) 307, 792, 964, 1075, 1177
BstMAI GTCTC 3 cut(s) 13, 639, 959
BstMWI GCNNNNNNNGC 1 cut(s) 772
BstSCI CCNGG 1 cut(s) 1064
BstSFI CTRYAG 1 cut(s) 324
BstSLI GKGCMC 1 cut(s) 672
BstV1I GCAGC 3 cut(s) 338, 352, 709
BstV2I GAAGAC 2 cut(s) 50, 117
BstX2I RGATCY 5 cut(s) 538, 817, 823, 850, 938
BstYI RGATCY 5 cut(s) 538, 817, 823, 850, 938
Bsu15I ATCGAT 1 cut(s) 1080
BsuRI GGCC 4 cut(s) 279, 291, 565, 670
BsuTUI ATCGAT 1 cut(s) 1080
BtsCI GGATG 5 cut(s) 307, 792, 964, 1075, 1177
BtsI GCAGTG 1 cut(s) 452
BtsIMutI CAGTG 1 cut(s) 452
Cac8I GCNNGC 6 cut(s) 277, 281, 324, 447, 898, 1032
CaiI CAGNNNCTG 1 cut(s) 153
Cfr10I RCCGGY 2 cut(s) 244, 545
Cfr13I GGNCC 5 cut(s) 289, 401, 668, 669, 783
ClaI ATCGAT 1 cut(s) 1080
Csp6I GTAC 1 cut(s) 952
CviAII CATG 1 cut(s) 787
CviQI GTAC 1 cut(s) 952
DdeI CTNAG 5 cut(s) 10, 360, 423, 813, 935
EaeI YGGCCR 2 cut(s) 277, 563
Eam1104I CTCTTC 3 cut(s) 261, 604, 975
EarI CTCTTC 3 cut(s) 261, 604, 975
EciI GGCGGA 1 cut(s) 66
Eco130I CCWWGG 2 cut(s) 162, 681
Eco24I GRGCYC 1 cut(s) 672
Eco31I GGTCTC 1 cut(s) 13
Eco47I GGWCC 2 cut(s) 401, 783
Eco57I CTGAAG 2 cut(s) 242, 624
Eco88I CYCGRG 1 cut(s) 344
EcoO109I RGGNCCY 3 cut(s) 401, 668, 669
EcoRI GAATTC 1 cut(s) 71
EcoT14I CCWWGG 2 cut(s) 162, 681
EcoT38I GRGCYC 1 cut(s) 672
ErhI CCWWGG 2 cut(s) 162, 681
FaeI CATG 1 cut(s) 790
FalI AAGNNNNNCTT 2 cut(s) 910, 942
FaqI GGGAC 1 cut(s) 387
FatI CATG 1 cut(s) 786
FbaI TGATCA 2 cut(s) 334, 760
FblI GTMKAC 1 cut(s) 157
Fnu4HI GCNGC 4 cut(s) 327, 341, 450, 723
FokI GGATG 5 cut(s) 294, 779, 971, 1082, 1184
FriOI GRGCYC 1 cut(s) 672
Fsp4HI GCNGC 4 cut(s) 327, 341, 450, 723
FspBI CTAG 3 cut(s) 228, 584, 1133
GluI GCNGC 4 cut(s) 327, 341, 450, 723
GsuI CTGGAG 1 cut(s) 372
HaeIII GGCC 4 cut(s) 279, 291, 565, 670
HapII CCGG 9 cut(s) 48, 68, 135, 245, 546, 821, 827, 1065, 1119
Hin1II CATG 1 cut(s) 790
HinfI GANTC 8 cut(s) 116, 224, 266, 383, 587, 857, 967, 1190
HpaII CCGG 9 cut(s) 48, 68, 135, 245, 546, 821, 827, 1065, 1119
HphI GGTGA 1 cut(s) 899
Hpy166II GTNNAC 2 cut(s) 158, 595
Hpy188I TCNGA 8 cut(s) 77, 115, 149, 220, 538, 604, 801, 869
Hpy188III TCNNGA 7 cut(s) 346, 815, 821, 854, 878, 1057, 1119
Hpy8I GTNNAC 2 cut(s) 158, 595
Hpy99I CGWCG 2 cut(s) 29, 884
HpyAV CCTTC 1 cut(s) 806
HpyCH4III ACNGT 2 cut(s) 180, 884
HpyCH4IV ACGT 2 cut(s) 27, 805
HpyCH4V TGCA 6 cut(s) 4, 326, 457, 484, 962, 1151
HpyF10VI GCNNNNNNNGC 1 cut(s) 772
HpyF3I CTNAG 5 cut(s) 10, 360, 423, 813, 935
HpySE526I ACGT 2 cut(s) 27, 805
Hsp92II CATG 1 cut(s) 790
Kpn2I TCCGGA 2 cut(s) 820, 1118
Ksp22I TGATCA 2 cut(s) 334, 760
LmnI GCTCC 1 cut(s) 256
Lsp1109I GCAGC 3 cut(s) 338, 352, 709
LweI GCATC 5 cut(s) 224, 358, 401, 949, 1162
MaeI CTAG 3 cut(s) 228, 584, 1133
MaeII ACGT 2 cut(s) 27, 805
MaeIII GTNAC 1 cut(s) 808
MbiI CCGCTC 1 cut(s) 449
MboII GAAGA 8 cut(s) 50, 117, 248, 389, 392, 591, 669, 962
MflI RGATCY 5 cut(s) 538, 817, 823, 850, 938
MhlI GDGCHC 1 cut(s) 672
MlsI TGGCCA 2 cut(s) 279, 565
MluCI AATT 3 cut(s) 39, 71, 235
MluNI TGGCCA 2 cut(s) 279, 565
MlyI GAGTC 1 cut(s) 961
MmeI TCCRAC 2 cut(s) 100, 148
Mox20I TGGCCA 2 cut(s) 279, 565
MroI TCCGGA 2 cut(s) 820, 1118
MroXI GAANNNNTTC 1 cut(s) 591
MscI TGGCCA 2 cut(s) 279, 565
MseI TTAA 1 cut(s) 1124
MslI CAYNNNNRTG 1 cut(s) 1165
Msp20I TGGCCA 2 cut(s) 279, 565
MspA1I CMGCKG 2 cut(s) 329, 766
MspI CCGG 9 cut(s) 48, 68, 135, 245, 546, 821, 827, 1065, 1119
MspR9I CCNGG 1 cut(s) 1066
MwoI GCNNNNNNNGC 1 cut(s) 772
NciI CCSGG 1 cut(s) 1066
NlaIII CATG 1 cut(s) 790
NmeAIII GCCGAG 1 cut(s) 215
PaeR7I CTCGAG 1 cut(s) 344
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PdmI GAANNNNTTC 1 cut(s) 591
PfeI GAWTC 7 cut(s) 116, 224, 266, 383, 587, 857, 1190
PflMI CCANNNNNTGG 1 cut(s) 286
PkrI GCNGC 4 cut(s) 328, 342, 451, 724
PleI GAGTC 1 cut(s) 961
PpsI GAGTC 1 cut(s) 961
PpuMI RGGWCCY 1 cut(s) 401
Psp5II RGGWCCY 1 cut(s) 401
PspOMI GGGCCC 1 cut(s) 668
PspPI GGNCC 5 cut(s) 289, 401, 668, 669, 783
PspPPI RGGWCCY 1 cut(s) 401
PstI CTGCAG 1 cut(s) 328
PstNI CAGNNNCTG 1 cut(s) 153
PsuI RGATCY 5 cut(s) 538, 817, 823, 850, 938
PvuII CAGCTG 1 cut(s) 329
RsaI GTAC 1 cut(s) 953
RsaNI GTAC 1 cut(s) 952
RseI CAYNNNNRTG 1 cut(s) 1165
SaqAI TTAA 1 cut(s) 1124
SatI GCNGC 4 cut(s) 327, 341, 450, 723
Sau96I GGNCC 5 cut(s) 289, 401, 668, 669, 783
SchI GAGTC 1 cut(s) 961
ScrFI CCNGG 1 cut(s) 1066
SduI GDGCHC 1 cut(s) 672
SfaNI GCATC 5 cut(s) 224, 358, 401, 949, 1162
SfcI CTRYAG 1 cut(s) 324
Sfr274I CTCGAG 1 cut(s) 344
SinI GGWCC 2 cut(s) 401, 783
SlaI CTCGAG 1 cut(s) 344
SmiMI CAYNNNNRTG 1 cut(s) 1165
SmlI CTYRAG 2 cut(s) 344, 776
SmoI CTYRAG 2 cut(s) 344, 776
Sse9I AATT 3 cut(s) 39, 71, 235
SsiI CCGC 4 cut(s) 51, 449, 766, 1145
SspMI CTAG 3 cut(s) 228, 584, 1133
StyD4I CCNGG 1 cut(s) 1064
StyI CCWWGG 2 cut(s) 162, 681
TaaI ACNGT 2 cut(s) 180, 884
TaiI ACGT 2 cut(s) 30, 808
TaqI TCGA 3 cut(s) 345, 931, 1080
TasI AATT 3 cut(s) 39, 71, 235
TatI WGTACW 1 cut(s) 951
TauI GCSGC 1 cut(s) 452
TfiI GAWTC 7 cut(s) 116, 224, 266, 383, 587, 857, 1190
Tru1I TTAA 1 cut(s) 1124
Tru9I TTAA 1 cut(s) 1124
TscAI CASTG 1 cut(s) 459
TseI GCWGC 3 cut(s) 326, 340, 722
TspDTI ATGAA 5 cut(s) 516, 803, 892, 906, 1110
TspRI CASTG 1 cut(s) 459
Van91I CCANNNNNTGG 1 cut(s) 286
VpaK11BI GGWCC 2 cut(s) 401, 783
XapI RAATTY 1 cut(s) 71
XhoI CTCGAG 1 cut(s) 344
XmiI GTMKAC 1 cut(s) 157
XmnI GAANNNNTTC 1 cut(s) 591
XspI CTAG 3 cut(s) 228, 584, 1133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.