Rorug07G0131000

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000688
Physical Location & Seq
Forward (+)
10352417 .. 10353964
1548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0131000.1

Sequence Viewer

Length: 573 bp
ATGAAAAAGTGTACCAGTGAGACGTCGTCCAAACTGGACAGAAAGACGGTGGAGAGGAACCGGAGAATTCACATGAAAGGTCTCTGCCTTAAGCTTGCTTCCATGGTTCCTCCCCAATACTACAAATCCTCCAAATCCAAGGAAATGATGACACAGCAAAGTCAGCTCGATCTTGCAGCCTCCTACATAAAGCAATTGACAGAAAGAATAGAGAATCTGAAGGAGAGGAAGGAGAAAGAACTGAAATCAAAATTAGGGACTAGTAATAAGTCGAGCATTAATAATGTCGATCGTCCTAATAAAGCTGTGGTGGTCGGATCAAGGTTGCCTGTTATTAAACTAACTGAATCGGGATCTAGCATAGAAGTAATGCTGATCAGTGGGCTGAATAAGAACTTCATGTTTTATGAAGTTATCAGTGTACTTGAGGAAGAAGGAGCCGAAGTTGTCAGCGCTAACTTTTCCACTGTGGGTGATAAGGTCTTCCATACGATCCATGCTCAGGTTAAAATTTCTAGGGTTGGTGTAGAGACTACGACGGTATGGCAGAGACTGCAGGATTTGATTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_16 XET_C

Protein Analysis

190

Amino Acids

21.52

Weight (kDa)

9.6

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000688)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09820 FvH4_2g17160 FvH4_2g17160
malus_domestica MD02G1107100.v1.1 MD02G1107300.v1.1 MD05G1144900.v1.1 MD10G1144700.v1.1 MD15G1226500.v1.1
prunus_persica Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.8G183000_v2.0.a1
pyrus_communis pycom05g14000 pycom10g12440 pycom15g20140
rosa_chinensis RchiOBHm_Chr2g0096621 RchiOBHm_Chr6g0281601 RchiOBHm_Chr6g0281651 RchiOBHm_Chr7g0212121
rosa_laevigata RLG00000002926 RLG00000002927 RLG00000002933 RLG00000008638 RLG00000012954 RLG00000012955 RLG00000016656
rosa_multiflora Rmu_co8091766.1_g000001 Rmu_co8287847.1_g000001 Rmu_co8297221.1_g000001 Rmu_co8485327.1_g000001 Rmu_co8512767.1_g000001 Rmu_sc0002316.1_g000041 Rmu_sc0003565.1_g000009 Rmu_sc0014556.1_g000004 Rmu_sc0027573.1_g000001 Rmu_sc0030028.1_g000001
rosa_roxburghii Rroxscaffold_1G00026540 Rroxscaffold_2G00145470 Rroxscaffold_3G00247100 Rroxscaffold_3G00247110 Rroxscaffold_3G00247120 Rroxscaffold_5G00362680 Rroxscaffold_5G00362710 Rroxscaffold_7G00186950
rosa_rugosa Rorug02G0059000 Rorug02G0059100 Rorug06G0142300 Rorug07G0131000 Rorug07G0131100
rosa_samantha Rh1DG155700 Rh2AG106500 Rh2AG171500 Rh2BG108800 Rh2BG178900 Rh2CG110600 Rh2CG176400 Rh2DG110100 Rh2DG177600 Rh4BG120600 Rh6BG258300 Rh6CG257100 Rh6DG249200 Rh6DG249300 Rh7AG264100 Rh7AG264200 Rh7BG257800 Rh7BG257900 Rh7BG258000 Rh7BG258100 Rh7CG280600 Rh7CG280700 Rh7DG270600
rosa_wichuraiana Rw2G008240 Rw6G022110 Rw7G022540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 26
AclWI GGATC 3 cut(s) 325, 361, 487
AcsI RAATTY 2 cut(s) 66, 510
AcuI CTGAAG 1 cut(s) 239
AcyI GRCGYC 1 cut(s) 23
AfaI GTAC 2 cut(s) 13, 423
AfeI AGCGCT 1 cut(s) 454
AfiI CCNNNNNNNGG 1 cut(s) 502
AflII CTTAAG 1 cut(s) 89
AhlI ACTAGT 1 cut(s) 260
AluBI AGCT 3 cut(s) 94, 166, 305
AluI AGCT 3 cut(s) 94, 166, 305
Alw26I GTCTC 4 cut(s) 14, 86, 524, 544
AlwI GGATC 3 cut(s) 325, 361, 487
AlwNI CAGNNNCTG 1 cut(s) 553
Aor51HI AGCGCT 1 cut(s) 454
ApeKI GCWGC 1 cut(s) 176
ApoI RAATTY 2 cut(s) 66, 510
AseI ATTAAT 1 cut(s) 279
AspLEI GCGC 1 cut(s) 455
AsuHPI GGTGA 1 cut(s) 485
BbsI GAAGAC 1 cut(s) 475
BbvI GCAGC 1 cut(s) 188
BclI TGATCA 1 cut(s) 375
BcoDI GTCTC 4 cut(s) 14, 86, 524, 544
BcuI ACTAGT 1 cut(s) 260
BfaI CTAG 3 cut(s) 261, 357, 516
BfmI CTRYAG 1 cut(s) 554
BfoI RGCGCY 1 cut(s) 456
BfrI CTTAAG 1 cut(s) 89
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
BmiI GGNNCC 3 cut(s) 59, 108, 439
BpiI GAAGAC 1 cut(s) 475
Bpu10I CCTNAGC 1 cut(s) 501
BpuEI CTTGAG 1 cut(s) 446
BsaHI GRCGYC 1 cut(s) 23
BsaI GGTCTC 1 cut(s) 86
BsaJI CCNNGG 2 cut(s) 102, 138
BsaWI WCCGGW 1 cut(s) 60
BsaXI ACNNNNNCTCC 4 cut(s) 113, 143, 429, 459
Bsc4I CCNNNNNNNGG 1 cut(s) 502
Bse1I ACTGG 2 cut(s) 15, 39
BseDI CCNNGG 2 cut(s) 102, 138
BseLI CCNNNNNNNGG 1 cut(s) 502
BseMII CTCAG 1 cut(s) 515
BseNI ACTGG 2 cut(s) 15, 39
BseXI GCAGC 1 cut(s) 188
Bsh1285I CGRYCG 1 cut(s) 292
BsiEI CGRYCG 1 cut(s) 292
BsiSI CCGG 1 cut(s) 61
BslFI GGGAC 1 cut(s) 271
BslI CCNNNNNNNGG 1 cut(s) 502
BsmAI GTCTC 4 cut(s) 14, 86, 524, 544
BsmBI CGTCTC 1 cut(s) 14
BsmFI GGGAC 1 cut(s) 271
Bso31I GGTCTC 1 cut(s) 86
Bsp143I GATC 6 cut(s) 169, 289, 317, 353, 375, 492
Bsp19I CCATGG 1 cut(s) 102
BspCNI CTCAG 1 cut(s) 514
BspLI GGNNCC 3 cut(s) 59, 108, 439
BspMAI CTGCAG 1 cut(s) 558
BspPI GGATC 3 cut(s) 325, 361, 487
BspTI CTTAAG 1 cut(s) 89
BspTNI GGTCTC 1 cut(s) 86
BsrI ACTGG 2 cut(s) 15, 39
BssECI CCNNGG 2 cut(s) 102, 138
BssMI GATC 6 cut(s) 169, 289, 317, 353, 375, 492
BssNI GRCGYC 1 cut(s) 23
BssT1I CCWWGG 2 cut(s) 102, 138
Bst4CI ACNGT 3 cut(s) 49, 469, 541
BstACI GRCGYC 1 cut(s) 23
BstAFI CTTAAG 1 cut(s) 89
BstAPI GCANNNNNTGC 1 cut(s) 553
BstC8I GCNNGC 1 cut(s) 96
BstDEI CTNAG 1 cut(s) 501
BstDSI CCRYGG 1 cut(s) 102
BstH2I RGCGCY 1 cut(s) 456
BstHHI GCGC 1 cut(s) 455
BstKTI GATC 6 cut(s) 172, 292, 320, 356, 378, 495
BstMAI GTCTC 4 cut(s) 14, 86, 524, 544
BstMBI GATC 6 cut(s) 169, 289, 317, 353, 375, 492
BstMCI CGRYCG 1 cut(s) 292
BstMWI GCNNNNNNNGC 2 cut(s) 163, 553
BstSFI CTRYAG 1 cut(s) 554
BstV1I GCAGC 1 cut(s) 188
BstV2I GAAGAC 1 cut(s) 475
BstX2I RGATCY 1 cut(s) 353
BstYI RGATCY 1 cut(s) 353
BtgI CCRYGG 1 cut(s) 102
BtsIMutI CAGTG 4 cut(s) 22, 385, 424, 465
Cac8I GCNNGC 1 cut(s) 96
CaiI CAGNNNCTG 1 cut(s) 553
CfoI GCGC 1 cut(s) 455
Csp6I GTAC 2 cut(s) 12, 422
CviAII CATG 4 cut(s) 73, 103, 400, 497
CviJI RGCY 6 cut(s) 94, 166, 179, 305, 385, 440
CviKI_1 RGCY 6 cut(s) 94, 166, 179, 305, 385, 440
CviQI GTAC 2 cut(s) 12, 422
DdeI CTNAG 1 cut(s) 501
DpnI GATC 6 cut(s) 171, 291, 319, 355, 377, 494
DpnII GATC 6 cut(s) 169, 289, 317, 353, 375, 492
Eco130I CCWWGG 2 cut(s) 102, 138
Eco31I GGTCTC 1 cut(s) 86
Eco47III AGCGCT 1 cut(s) 454
Eco57I CTGAAG 1 cut(s) 239
EcoRI GAATTC 1 cut(s) 66
EcoT14I CCWWGG 2 cut(s) 102, 138
ErhI CCWWGG 2 cut(s) 102, 138
Esp3I CGTCTC 1 cut(s) 14
FaeI CATG 4 cut(s) 76, 106, 403, 500
FaiI YATR 9 cut(s) 74, 104, 188, 362, 401, 408, 489, 498, 544
FaqI GGGAC 1 cut(s) 271
FatI CATG 4 cut(s) 72, 102, 399, 496
FbaI TGATCA 1 cut(s) 375
Fnu4HI GCNGC 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 3 cut(s) 261, 357, 516
GlaI GCGC 1 cut(s) 454
GluI GCNGC 1 cut(s) 177
HaeII RGCGCY 1 cut(s) 456
HapII CCGG 1 cut(s) 61
HhaI GCGC 1 cut(s) 455
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 4 cut(s) 76, 106, 403, 500
Hin6I GCGC 1 cut(s) 453
HinP1I GCGC 1 cut(s) 453
HindIII AAGCTT 1 cut(s) 92
HinfI GANTC 2 cut(s) 214, 347
HpaII CCGG 1 cut(s) 61
HphI GGTGA 1 cut(s) 485
Hpy166II GTNNAC 2 cut(s) 12, 422
Hpy188I TCNGA 2 cut(s) 219, 317
Hpy188III TCNNGA 1 cut(s) 351
Hpy8I GTNNAC 2 cut(s) 12, 422
Hpy99I CGWCG 2 cut(s) 28, 541
HpyAV CCTTC 3 cut(s) 214, 223, 428
HpyCH4III ACNGT 3 cut(s) 49, 469, 541
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 2 cut(s) 176, 556
HpyF10VI GCNNNNNNNGC 2 cut(s) 163, 553
HpyF3I CTNAG 1 cut(s) 501
HpySE526I ACGT 1 cut(s) 23
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 4 cut(s) 76, 106, 403, 500
HspAI GCGC 1 cut(s) 453
Ksp22I TGATCA 1 cut(s) 375
Kzo9I GATC 6 cut(s) 169, 289, 317, 353, 375, 492
LmnI GCTCC 1 cut(s) 437
LpnPI CCDG 6 cut(s) 20, 28, 74, 342, 488, 542
Lsp1109I GCAGC 1 cut(s) 188
MaeI CTAG 3 cut(s) 261, 357, 516
MaeII ACGT 1 cut(s) 23
MalI GATC 6 cut(s) 171, 291, 319, 355, 377, 494
MboI GATC 6 cut(s) 169, 289, 317, 353, 375, 492
MboII GAAGA 2 cut(s) 443, 475
MfeI CAATTG 1 cut(s) 194
MflI RGATCY 1 cut(s) 353
MluCI AATT 4 cut(s) 66, 194, 251, 510
MmeI TCCRAC 1 cut(s) 295
MnlI CCTC 6 cut(s) 48, 120, 139, 190, 219, 421
MseI TTAA 4 cut(s) 90, 279, 336, 507
MspCI CTTAAG 1 cut(s) 89
MspI CCGG 1 cut(s) 61
MunI CAATTG 1 cut(s) 194
MwoI GCNNNNNNNGC 2 cut(s) 163, 553
NcoI CCATGG 1 cut(s) 102
NdeII GATC 6 cut(s) 169, 289, 317, 353, 375, 492
NlaIII CATG 4 cut(s) 76, 106, 403, 500
NlaIV GGNNCC 3 cut(s) 59, 108, 439
PfeI GAWTC 2 cut(s) 214, 347
PflFI GACNNNGTC 1 cut(s) 25
PkrI GCNGC 1 cut(s) 178
Ple19I CGATCG 1 cut(s) 292
PshBI ATTAAT 1 cut(s) 279
PspN4I GGNNCC 3 cut(s) 59, 108, 439
PstI CTGCAG 1 cut(s) 558
PstNI CAGNNNCTG 1 cut(s) 553
PsuI RGATCY 1 cut(s) 353
PsyI GACNNNGTC 1 cut(s) 25
PvuI CGATCG 1 cut(s) 292
RsaI GTAC 2 cut(s) 13, 423
RsaNI GTAC 2 cut(s) 12, 422
SaqAI TTAA 4 cut(s) 90, 279, 336, 507
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 6 cut(s) 169, 289, 317, 353, 375, 492
SetI ASST 8 cut(s) 26, 82, 96, 168, 307, 326, 483, 507
SfcI CTRYAG 1 cut(s) 554
SmlI CTYRAG 2 cut(s) 89, 425
SmoI CTYRAG 2 cut(s) 89, 425
SpeI ACTAGT 1 cut(s) 260
Sse9I AATT 4 cut(s) 66, 194, 251, 510
SspMI CTAG 3 cut(s) 261, 357, 516
StyI CCWWGG 2 cut(s) 102, 138
TaaI ACNGT 3 cut(s) 49, 469, 541
TaiI ACGT 1 cut(s) 26
TaqI TCGA 3 cut(s) 168, 272, 288
TasI AATT 4 cut(s) 66, 194, 251, 510
TatI WGTACW 1 cut(s) 421
TfiI GAWTC 2 cut(s) 214, 347
Tru1I TTAA 4 cut(s) 90, 279, 336, 507
Tru9I TTAA 4 cut(s) 90, 279, 336, 507
TscAI CASTG 4 cut(s) 22, 385, 424, 472
TseI GCWGC 1 cut(s) 176
TspDTI ATGAA 4 cut(s) 17, 89, 388, 423
TspRI CASTG 4 cut(s) 22, 385, 424, 472
Tth111I GACNNNGTC 1 cut(s) 25
Vha464I CTTAAG 1 cut(s) 89
VspI ATTAAT 1 cut(s) 279
XapI RAATTY 2 cut(s) 66, 510
XspI CTAG 3 cut(s) 261, 357, 516
ZraI GACGTC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.