RLG00000012955

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000688
Physical Location & Seq
Reverse (-)
24271034 .. 24273539
2506 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012955

Sequence Viewer

Length: 675 bp
ATGGTTTTATCTCAAAGATTATCAATCATCTACTTGGTTTTCACCTTTGCCATAATTTTTGTAGCATCAGCAGCTGATCCTAGGCAATTCCCCTTTACCACATTCAGTGAAAAAACTGACCAATCTGTATTCCATTTCACGGATTATTCATCCATTGATCAAGGGGCACTTCAGTTAACCCCAGACACTGAGAATGCAGACGGCGGCTATTTTAACAAGTCCGGCAGGATCATGTATGACAAACCTTATAGACTCTGGTCATCTGACAATGAAGACGATGATGGTGTTGCCTCCTTCAACTCGACTTTCTGGCTAGGCCTCACCAGTGCCACCACTGATGGTAATGCTACAAACCACATGGTTGCCATAGAATTCGACACAAGAAAGCAAGATTTCGACCCCGATGACAACCATATAGGCCTCAACATCAACTCTGTAAGATCAAGTAAGACTGTTTCTCTTGAGCCTTTCGACATTGAGATATCACCGGAGGTAGGCACCAACTACACCGTGTGGGTGCAATACAATGGCAGCTCAAAAGTCATTGAAGTCTATATGGAATGCCACGTGGACTGGTGTGGAGCTGCTCATTCATTGACGAGGAAAGTTTTATCCACTATCAAGGAACTGGAAGAAAGTTGGACCAACGCGGTTCAAAGAGGTTTTATTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

225

Amino Acids

25.22

Weight (kDa)

4.54

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 29 - 104 1.1e-09 Legume lectin domain
Lectin_legB PF00139 104 - 222 4.5e-26 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000688)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09820 FvH4_2g17160 FvH4_2g17160
malus_domestica MD02G1107100.v1.1 MD02G1107300.v1.1 MD05G1144900.v1.1 MD10G1144700.v1.1 MD15G1226500.v1.1
prunus_persica Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.8G183000_v2.0.a1
pyrus_communis pycom05g14000 pycom10g12440 pycom15g20140
rosa_chinensis RchiOBHm_Chr2g0096621 RchiOBHm_Chr6g0281601 RchiOBHm_Chr6g0281651 RchiOBHm_Chr7g0212121
rosa_laevigata RLG00000002926 RLG00000002927 RLG00000002933 RLG00000008638 RLG00000012954 RLG00000012955 RLG00000016656
rosa_multiflora Rmu_co8091766.1_g000001 Rmu_co8287847.1_g000001 Rmu_co8297221.1_g000001 Rmu_co8485327.1_g000001 Rmu_co8512767.1_g000001 Rmu_sc0002316.1_g000041 Rmu_sc0003565.1_g000009 Rmu_sc0014556.1_g000004 Rmu_sc0027573.1_g000001 Rmu_sc0030028.1_g000001
rosa_roxburghii Rroxscaffold_1G00026540 Rroxscaffold_2G00145470 Rroxscaffold_3G00247100 Rroxscaffold_3G00247110 Rroxscaffold_3G00247120 Rroxscaffold_5G00362680 Rroxscaffold_5G00362710 Rroxscaffold_7G00186950
rosa_rugosa Rorug02G0059000 Rorug02G0059100 Rorug06G0142300 Rorug07G0131000 Rorug07G0131100
rosa_samantha Rh1DG155700 Rh2AG106500 Rh2AG171500 Rh2BG108800 Rh2BG178900 Rh2CG110600 Rh2CG176400 Rh2DG110100 Rh2DG177600 Rh4BG120600 Rh6BG258300 Rh6CG257100 Rh6DG249200 Rh6DG249300 Rh7AG264100 Rh7AG264200 Rh7BG257800 Rh7BG257900 Rh7BG258000 Rh7BG258100 Rh7CG280600 Rh7CG280700 Rh7DG270600
rosa_wichuraiana Rw2G008240 Rw6G022110 Rw7G022540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 497
AccII CGCG 1 cut(s) 650
AciI CCGC 2 cut(s) 204, 650
AclWI GGATC 2 cut(s) 71, 236
AcsI RAATTY 1 cut(s) 371
AcuI CTGAAG 1 cut(s) 155
AcvI CACGTG 1 cut(s) 568
AdeI CACNNNGTG 1 cut(s) 513
AfiI CCNNNNNNNGG 2 cut(s) 139, 494
AgsI TTSAA 3 cut(s) 298, 548, 656
AluBI AGCT 3 cut(s) 74, 534, 584
AluI AGCT 3 cut(s) 74, 534, 584
AlwI GGATC 2 cut(s) 71, 236
AlwNI CAGNNNCTG 2 cut(s) 74, 188
AoxI GGCC 2 cut(s) 316, 418
ApeKI GCWGC 3 cut(s) 71, 531, 584
ApoI RAATTY 1 cut(s) 371
AspA2I CCTAGG 1 cut(s) 80
AspS9I GGNCC 1 cut(s) 642
AsuHPI GGTGA 3 cut(s) 34, 313, 477
AvaII GGWCC 1 cut(s) 642
AvrII CCTAGG 1 cut(s) 80
BaeGI GKGCMC 1 cut(s) 169
BanI GGYRCC 1 cut(s) 497
BbrPI CACGTG 1 cut(s) 568
BbsI GAAGAC 1 cut(s) 279
BbvI GCAGC 3 cut(s) 83, 543, 571
BccI CCATC 2 cut(s) 275, 332
BceAI ACGGC 1 cut(s) 217
BclI TGATCA 1 cut(s) 157
BfaI CTAG 2 cut(s) 81, 314
BisI GCNGC 4 cut(s) 72, 205, 532, 585
BlnI CCTAGG 1 cut(s) 80
BlsI GCNGC 4 cut(s) 73, 206, 533, 586
Bme18I GGWCC 1 cut(s) 642
BmgT120I GGNCC 1 cut(s) 642
BmiI GGNNCC 1 cut(s) 499
BmsI GCATC 1 cut(s) 74
BoxI GACNNNNGTC 1 cut(s) 256
BpiI GAAGAC 1 cut(s) 279
BpuEI CTTGAG 1 cut(s) 482
BsaAI YACGTR 1 cut(s) 568
BsaJI CCNNGG 1 cut(s) 80
BsaWI WCCGGW 1 cut(s) 487
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 494
Bse1I ACTGG 3 cut(s) 324, 578, 633
BseDI CCNNGG 1 cut(s) 80
BseGI GGATG 1 cut(s) 149
BseLI CCNNNNNNNGG 2 cut(s) 139, 494
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 3 cut(s) 324, 578, 633
BseSI GKGCMC 1 cut(s) 169
BseXI GCAGC 3 cut(s) 83, 543, 571
Bsh1236I CGCG 1 cut(s) 650
BshFI GGCC 2 cut(s) 318, 420
BshNI GGYRCC 1 cut(s) 497
BsiSI CCGG 2 cut(s) 222, 488
BslI CCNNNNNNNGG 2 cut(s) 139, 494
BsmI GAATGC 2 cut(s) 199, 566
BsnI GGCC 2 cut(s) 318, 420
Bsp1286I GDGCHC 1 cut(s) 169
Bsp143I GATC 4 cut(s) 76, 157, 228, 440
BspACI CCGC 2 cut(s) 204, 650
BspANI GGCC 2 cut(s) 318, 420
BspCNI CTCAG 1 cut(s) 181
BspFNI CGCG 1 cut(s) 650
BspLI GGNNCC 1 cut(s) 499
BspPI GGATC 2 cut(s) 71, 236
BspT107I GGYRCC 1 cut(s) 497
BsrI ACTGG 3 cut(s) 324, 578, 633
BssECI CCNNGG 1 cut(s) 80
BssMI GATC 4 cut(s) 76, 157, 228, 440
BssT1I CCWWGG 1 cut(s) 80
Bst4CI ACNGT 2 cut(s) 454, 511
BstBAI YACGTR 1 cut(s) 568
BstDEI CTNAG 1 cut(s) 189
BstF5I GGATG 1 cut(s) 149
BstFNI CGCG 1 cut(s) 650
BstKTI GATC 4 cut(s) 79, 160, 231, 443
BstMBI GATC 4 cut(s) 76, 157, 228, 440
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstPAI GACNNNNGTC 1 cut(s) 256
BstSLI GKGCMC 1 cut(s) 169
BstUI CGCG 1 cut(s) 650
BstV1I GCAGC 3 cut(s) 83, 543, 571
BstV2I GAAGAC 1 cut(s) 279
BsuRI GGCC 2 cut(s) 318, 420
BtsCI GGATG 1 cut(s) 149
BtsIMutI CAGTG 4 cut(s) 112, 186, 331, 333
CaiI CAGNNNCTG 2 cut(s) 74, 188
Cfr13I GGNCC 1 cut(s) 642
CviAII CATG 2 cut(s) 232, 358
CviJI RGCY 8 cut(s) 74, 207, 313, 318, 420, 466, 534, 584
CviKI_1 RGCY 8 cut(s) 74, 207, 313, 318, 420, 466, 534, 584
DdeI CTNAG 1 cut(s) 189
DpnI GATC 4 cut(s) 78, 159, 230, 442
DpnII GATC 4 cut(s) 76, 157, 228, 440
DraIII CACNNNGTG 1 cut(s) 513
Eco130I CCWWGG 1 cut(s) 80
Eco147I AGGCCT 2 cut(s) 318, 420
Eco32I GATATC 1 cut(s) 483
Eco47I GGWCC 1 cut(s) 642
Eco57I CTGAAG 1 cut(s) 155
Eco72I CACGTG 1 cut(s) 568
EcoRI GAATTC 1 cut(s) 371
EcoRV GATATC 1 cut(s) 483
EcoT14I CCWWGG 1 cut(s) 80
ErhI CCWWGG 1 cut(s) 80
FaeI CATG 2 cut(s) 235, 361
FalI AAGNNNNNCTT 2 cut(s) 153, 185
FatI CATG 2 cut(s) 231, 357
FbaI TGATCA 1 cut(s) 157
Fnu4HI GCNGC 4 cut(s) 72, 205, 532, 585
FokI GGATG 1 cut(s) 136
Fsp4HI GCNGC 4 cut(s) 72, 205, 532, 585
FspBI CTAG 2 cut(s) 81, 314
GluI GCNGC 4 cut(s) 72, 205, 532, 585
HaeIII GGCC 2 cut(s) 318, 420
HapII CCGG 2 cut(s) 222, 488
Hin1II CATG 2 cut(s) 235, 361
HincII GTYRAC 1 cut(s) 177
HindII GTYRAC 1 cut(s) 177
HinfI GANTC 1 cut(s) 252
HpaI GTTAAC 1 cut(s) 177
HpaII CCGG 2 cut(s) 222, 488
HphI GGTGA 3 cut(s) 34, 313, 477
Hpy166II GTNNAC 2 cut(s) 177, 571
Hpy188I TCNGA 1 cut(s) 265
Hpy188III TCNNGA 1 cut(s) 461
Hpy8I GTNNAC 2 cut(s) 177, 571
HpyAV CCTTC 1 cut(s) 304
HpyCH4III ACNGT 2 cut(s) 454, 511
HpyCH4IV ACGT 1 cut(s) 567
HpyCH4V TGCA 2 cut(s) 197, 520
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 189
HpySE526I ACGT 1 cut(s) 567
Hsp92II CATG 2 cut(s) 235, 361
Ksp22I TGATCA 1 cut(s) 157
KspAI GTTAAC 1 cut(s) 177
Kzo9I GATC 4 cut(s) 76, 157, 228, 440
LmnI GCTCC 1 cut(s) 581
LpnPI CCDG 9 cut(s) 195, 211, 235, 241, 295, 337, 501, 559, 614
Lsp1109I GCAGC 3 cut(s) 83, 543, 571
LweI GCATC 1 cut(s) 74
MaeI CTAG 2 cut(s) 81, 314
MaeII ACGT 1 cut(s) 567
MalI GATC 4 cut(s) 78, 159, 230, 442
MboI GATC 4 cut(s) 76, 157, 228, 440
MboII GAAGA 2 cut(s) 284, 644
MhlI GDGCHC 1 cut(s) 169
MluCI AATT 3 cut(s) 54, 86, 371
MlyI GAGTC 1 cut(s) 246
MmeI TCCRAC 1 cut(s) 620
MnlI CCTC 6 cut(s) 301, 329, 431, 484, 594, 653
MseI TTAA 2 cut(s) 176, 213
MspA1I CMGCKG 1 cut(s) 74
MspI CCGG 2 cut(s) 222, 488
Mva1269I GAATGC 2 cut(s) 199, 566
MvnI CGCG 1 cut(s) 650
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 4 cut(s) 76, 157, 228, 440
NlaIII CATG 2 cut(s) 235, 361
NlaIV GGNNCC 1 cut(s) 499
PceI AGGCCT 2 cut(s) 318, 420
PctI GAATGC 2 cut(s) 199, 566
PkrI GCNGC 4 cut(s) 73, 206, 533, 586
PleI GAGTC 1 cut(s) 246
PmaCI CACGTG 1 cut(s) 568
PmlI CACGTG 1 cut(s) 568
PpsI GAGTC 1 cut(s) 246
Ppu21I YACGTR 1 cut(s) 568
PshAI GACNNNNGTC 1 cut(s) 256
PspCI CACGTG 1 cut(s) 568
PspN4I GGNNCC 1 cut(s) 499
PspPI GGNCC 1 cut(s) 642
PstNI CAGNNNCTG 2 cut(s) 74, 188
PvuII CAGCTG 1 cut(s) 74
SaqAI TTAA 2 cut(s) 176, 213
SatI GCNGC 4 cut(s) 72, 205, 532, 585
Sau3AI GATC 4 cut(s) 76, 157, 228, 440
Sau96I GGNCC 1 cut(s) 642
SchI GAGTC 1 cut(s) 246
SduI GDGCHC 1 cut(s) 169
SetI ASST 8 cut(s) 47, 76, 247, 495, 536, 570, 586, 664
SfaNI GCATC 1 cut(s) 74
SinI GGWCC 1 cut(s) 642
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
Sse9I AATT 3 cut(s) 54, 86, 371
SseBI AGGCCT 2 cut(s) 318, 420
SsiI CCGC 2 cut(s) 204, 650
SspMI CTAG 2 cut(s) 81, 314
StuI AGGCCT 2 cut(s) 318, 420
StyI CCWWGG 1 cut(s) 80
TaaI ACNGT 2 cut(s) 454, 511
TaiI ACGT 1 cut(s) 570
TaqI TCGA 4 cut(s) 302, 375, 396, 471
TasI AATT 3 cut(s) 54, 86, 371
TauI GCSGC 1 cut(s) 207
Tru1I TTAA 2 cut(s) 176, 213
Tru9I TTAA 2 cut(s) 176, 213
TscAI CASTG 4 cut(s) 112, 193, 331, 340
TseI GCWGC 3 cut(s) 71, 531, 584
TspDTI ATGAA 3 cut(s) 138, 285, 582
TspGWI ACGGA 1 cut(s) 155
TspRI CASTG 4 cut(s) 112, 193, 331, 340
VpaK11BI GGWCC 1 cut(s) 642
XapI RAATTY 1 cut(s) 371
XmaJI CCTAGG 1 cut(s) 80
XspI CTAG 2 cut(s) 81, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.