Rh7BG258000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000688
Physical Location & Seq
Reverse (-)
23489317 .. 23489749
433 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG258000.1

Sequence Viewer

Length: 210 bp
ATGAAGGGTATGTTGAAGATGATACTGCAGCAGATCAATGATCCTGAAATGAAGGGCCTAGTGAAGAAGTTACTGGAGCAGAATCCAGGGGATTCAATAGAGACCTCAAGTTCCGCTTCAGGAAGTAATACAGAAAGAGAAGGGAATAACGAGACACAAGTGGAATCACTAGGACTATTAGAGGCAGCATTTCGGGTTCTATACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.6

Weight (kDa)

4.76

Isoelectric Point (pI)

46.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000688)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09820 FvH4_2g17160 FvH4_2g17160
malus_domestica MD02G1107100.v1.1 MD02G1107300.v1.1 MD05G1144900.v1.1 MD10G1144700.v1.1 MD15G1226500.v1.1
prunus_persica Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.8G183000_v2.0.a1
pyrus_communis pycom05g14000 pycom10g12440 pycom15g20140
rosa_chinensis RchiOBHm_Chr2g0096621 RchiOBHm_Chr6g0281601 RchiOBHm_Chr6g0281651 RchiOBHm_Chr7g0212121
rosa_laevigata RLG00000002926 RLG00000002927 RLG00000002933 RLG00000008638 RLG00000012954 RLG00000012955 RLG00000016656
rosa_multiflora Rmu_co8091766.1_g000001 Rmu_co8287847.1_g000001 Rmu_co8297221.1_g000001 Rmu_co8485327.1_g000001 Rmu_co8512767.1_g000001 Rmu_sc0002316.1_g000041 Rmu_sc0003565.1_g000009 Rmu_sc0014556.1_g000004 Rmu_sc0027573.1_g000001 Rmu_sc0030028.1_g000001
rosa_roxburghii Rroxscaffold_1G00026540 Rroxscaffold_2G00145470 Rroxscaffold_3G00247100 Rroxscaffold_3G00247110 Rroxscaffold_3G00247120 Rroxscaffold_5G00362680 Rroxscaffold_5G00362710 Rroxscaffold_7G00186950
rosa_rugosa Rorug02G0059000 Rorug02G0059100 Rorug06G0142300 Rorug07G0131000 Rorug07G0131100
rosa_samantha Rh1DG155700 Rh2AG106500 Rh2AG171500 Rh2BG108800 Rh2BG178900 Rh2CG110600 Rh2CG176400 Rh2DG110100 Rh2DG177600 Rh4BG120600 Rh6BG258300 Rh6CG257100 Rh6DG249200 Rh6DG249300 Rh7AG264100 Rh7AG264200 Rh7BG257800 Rh7BG257900 Rh7BG258000 Rh7BG258100 Rh7CG280600 Rh7CG280700 Rh7DG270600
rosa_wichuraiana Rw2G008240 Rw6G022110 Rw7G022540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 114
AclWI GGATC 1 cut(s) 35
AcuI CTGAAG 1 cut(s) 102
AflIII ACRYGT 1 cut(s) 204
AgsI TTSAA 2 cut(s) 16, 96
AjnI CCWGG 1 cut(s) 85
Alw26I GTCTC 2 cut(s) 95, 146
AlwI GGATC 1 cut(s) 35
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 2 cut(s) 28, 185
AspS9I GGNCC 1 cut(s) 55
BbvI GCAGC 2 cut(s) 40, 197
BciT130I CCWGG 1 cut(s) 87
BcoDI GTCTC 2 cut(s) 95, 146
BfaI CTAG 2 cut(s) 59, 170
BfmI CTRYAG 1 cut(s) 26
BisI GCNGC 2 cut(s) 29, 186
BlsI GCNGC 2 cut(s) 30, 187
Bme1390I CCNGG 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 55
BmrFI CCNGG 1 cut(s) 87
BpmI CTGGAG 1 cut(s) 95
BpuEI CTTGAG 1 cut(s) 91
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 86
Bse1I ACTGG 1 cut(s) 78
BseBI CCWGG 1 cut(s) 87
BseDI CCNNGG 1 cut(s) 86
BseNI ACTGG 1 cut(s) 78
BseXI GCAGC 2 cut(s) 40, 197
BshFI GGCC 1 cut(s) 57
BsmAI GTCTC 2 cut(s) 95, 146
BsnI GGCC 1 cut(s) 57
Bso31I GGTCTC 1 cut(s) 95
Bsp143I GATC 2 cut(s) 33, 40
BspACI CCGC 1 cut(s) 114
BspANI GGCC 1 cut(s) 57
BspMAI CTGCAG 1 cut(s) 30
BspPI GGATC 1 cut(s) 35
BspTNI GGTCTC 1 cut(s) 95
BsrI ACTGG 1 cut(s) 78
BssECI CCNNGG 1 cut(s) 86
BssMI GATC 2 cut(s) 33, 40
Bst2UI CCWGG 1 cut(s) 87
BstKTI GATC 2 cut(s) 36, 43
BstMAI GTCTC 2 cut(s) 95, 146
BstMBI GATC 2 cut(s) 33, 40
BstNI CCWGG 1 cut(s) 87
BstNSI RCATGY 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 85
BstSFI CTRYAG 1 cut(s) 26
BstV1I GCAGC 2 cut(s) 40, 197
BsuRI GGCC 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 55
CviAII CATG 1 cut(s) 205
CviJI RGCY 1 cut(s) 57
CviKI_1 RGCY 1 cut(s) 57
DpnI GATC 2 cut(s) 35, 42
DpnII GATC 2 cut(s) 33, 40
Eco31I GGTCTC 1 cut(s) 95
Eco57I CTGAAG 1 cut(s) 102
EcoO109I RGGNCCY 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 85
FaeI CATG 1 cut(s) 208
FaiI YATR 3 cut(s) 11, 202, 206
FalI AAGNNNNNCTT 2 cut(s) 100, 132
FatI CATG 1 cut(s) 204
Fnu4HI GCNGC 2 cut(s) 29, 186
Fsp4HI GCNGC 2 cut(s) 29, 186
FspBI CTAG 2 cut(s) 59, 170
GluI GCNGC 2 cut(s) 29, 186
GsuI CTGGAG 1 cut(s) 95
HaeIII GGCC 1 cut(s) 57
Hin1II CATG 1 cut(s) 208
HinfI GANTC 3 cut(s) 82, 92, 164
Hpy188III TCNNGA 2 cut(s) 44, 120
HpyAV CCTTC 2 cut(s) 46, 134
HpyCH4V TGCA 1 cut(s) 28
Hsp92II CATG 1 cut(s) 208
Kzo9I GATC 2 cut(s) 33, 40
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 5 cut(s) 57, 59, 72, 99, 105
Lsp1109I GCAGC 2 cut(s) 40, 197
MaeI CTAG 2 cut(s) 59, 170
MaeIII GTNAC 1 cut(s) 69
MalI GATC 2 cut(s) 35, 42
MboI GATC 2 cut(s) 33, 40
MboII GAAGA 2 cut(s) 28, 76
MnlI CCTC 2 cut(s) 115, 175
MspR9I CCNGG 1 cut(s) 87
MvaI CCWGG 1 cut(s) 87
NdeII GATC 2 cut(s) 33, 40
NlaIII CATG 1 cut(s) 208
NspI RCATGY 1 cut(s) 208
PciI ACATGT 1 cut(s) 204
PfeI GAWTC 3 cut(s) 82, 92, 164
PkrI GCNGC 2 cut(s) 30, 187
PscI ACATGT 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 85
PspGI CCWGG 1 cut(s) 85
PspPI GGNCC 1 cut(s) 55
PstI CTGCAG 1 cut(s) 30
SatI GCNGC 2 cut(s) 29, 186
Sau3AI GATC 2 cut(s) 33, 40
Sau96I GGNCC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 87
SetI ASST 1 cut(s) 107
SfcI CTRYAG 1 cut(s) 26
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
SsiI CCGC 1 cut(s) 114
SspMI CTAG 2 cut(s) 59, 170
StyD4I CCNGG 1 cut(s) 85
TfiI GAWTC 3 cut(s) 82, 92, 164
TseI GCWGC 2 cut(s) 28, 185
TspDTI ATGAA 2 cut(s) 17, 65
XceI RCATGY 1 cut(s) 208
XspI CTAG 2 cut(s) 59, 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.