Rroxscaffold_3G00247110
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
40427007 .. 40428389
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00247110.1

Sequence Viewer

Length: 1137 bp
ATGTTAAGTCCACTTTATTCTAACAAAAACCGCGACGATCTTGATGAAATGAAGGGTATGTTGGAGATGATACTGCAGCAGATCAATGATCCTGAAATGAAGGGCCTAGTGAAGAAGTTACTGGTGCAGAATCCAGGGGATTCAATAGAGACCTCAAGTTCCGCTTCAGGAAGTAATACAGAAAGAGAAGGGAATAACGAGACACAAGGCAGCATTTCGGGTTCTATACATGTGAAGGACAGGTCGACTTTGATGCCTGGACTAATTATCGGACATCTCAAATCCACACTAGACTGCTTAAAGCCATTGGTAGAAGATATAGCACAGCACAACAACAAGGCACTGGATTGCCCACAGAAGGAACTAGAAACTTTTCGAATGCAAATGAAGAATGGTGTAGAGCTAGTTCACAAGTGCTCAAAGTTTAATGAATGGACCAGCAACGAAACTTACAAATATACCAGCCAACTTTTTGAATTGGATGAGTATCTTCAAAGGCAGTTGAGTGTACTAATGCTGCAGGTAGCGAGTGATGTGAAGGAGACCTCGGTTATGCTAAAGAATGTACGAAAGGTGGTGGAGAGAATAGAAGGGATAAGTGGTGTGGCTAAAAATCAACAACTTGCATTGAATGTAGTGGAAGTGGATGAAACAAGGGATGTGAGGGAGACGACATTGGTTTCAGCAAGTAATGTAGAGGCAGAGTTGACTCTAGTGGATGGCGAGGATGATGAGATACCTAGACCGTCATCATTTACAGTGGGATTGGAGGATCCTCTGGAGGAATTGATGAGGATGTCTGGTCAGAAACCAAGAAAGAAGGAAAACTCAAAGATGAAGCTTCTTAAGGATGGAGTGGCAATGCTTGACCCGACAGGGCCCTATAAGAGGATGAGGGCCAGGGCCATGGCCAGGGAAAGGAACCCAATCATGTTAGGCGCGTTGAGGGAGTTCAGTTACAGGGATCTGAAGGAAGCTACCAACAACTTTGACTTCAAGCACATAATAAGTCGAGGTGAATGTGTGGTTTACAGAGGATTGCTGTCGAAGGACAATCTTGAAGTGGCAGTGAAGAAGTACTCCAGGGCAGAGAGCGAGGGTAAAAGACGATTTGTTGGCTCAGGTCACCAATATTAA

Protein Analysis

378

Amino Acids

42.75

Weight (kDa)

6.18

Isoelectric Point (pI)

30.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 77 - 191 4.9e-18 Arabidopsis broad-spectrum mildew resistance protein RPW8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000688)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 511
AccI GTMKAC 1 cut(s) 245
AccII CGCG 2 cut(s) 33, 941
AciI CCGC 2 cut(s) 31, 162
AclWI GGATC 4 cut(s) 83, 767, 780, 972
AcoI YGGCCR 1 cut(s) 909
AcuI CTGAAG 2 cut(s) 150, 989
AfaI GTAC 3 cut(s) 510, 567, 1079
AfiI CCNNNNNNNGG 4 cut(s) 358, 888, 912, 918
AflII CTTAAG 1 cut(s) 845
AflIII ACRYGT 1 cut(s) 229
AgsI TTSAA 6 cut(s) 144, 476, 494, 631, 997, 1061
AjnI CCWGG 5 cut(s) 133, 256, 899, 911, 1082
AjuI GAANNNNNNNTTGG 2 cut(s) 44, 76
AluBI AGCT 3 cut(s) 403, 841, 977
AluI AGCT 3 cut(s) 403, 841, 977
Alw21I GWGCWC 1 cut(s) 419
Alw26I GTCTC 4 cut(s) 143, 194, 536, 662
AlwI GGATC 4 cut(s) 83, 767, 780, 972
AoxI GGCC 5 cut(s) 103, 878, 897, 903, 909
ApaI GGGCCC 1 cut(s) 882
ApeKI GCWGC 3 cut(s) 76, 210, 517
Asp700I GAANNNNTTC 1 cut(s) 372
AspLEI GCGC 1 cut(s) 941
AspS9I GGNCC 6 cut(s) 103, 435, 878, 879, 897, 903
AsuHPI GGTGA 2 cut(s) 1028, 1118
AsuII TTCGAA 1 cut(s) 376
AvaII GGWCC 1 cut(s) 435
BaeGI GKGCMC 1 cut(s) 882
BalI TGGCCA 1 cut(s) 911
BamHI GGATCC 1 cut(s) 772
BanII GRGCYC 1 cut(s) 882
Bbv12I GWGCWC 1 cut(s) 419
BbvI GCAGC 3 cut(s) 88, 222, 504
BccI CCATC 2 cut(s) 713, 845
BcgI CGANNNNNNTGC 2 cut(s) 235, 269
BciT130I CCWGG 5 cut(s) 135, 258, 901, 913, 1084
BcoDI GTCTC 4 cut(s) 143, 194, 536, 662
BfaI CTAG 6 cut(s) 107, 290, 365, 404, 713, 741
BfmI CTRYAG 2 cut(s) 74, 518
BfrI CTTAAG 1 cut(s) 845
BfuAI ACCTGC 1 cut(s) 511
BisI GCNGC 3 cut(s) 77, 211, 518
BlsI GCNGC 3 cut(s) 78, 212, 519
BmcAI AGTACT 1 cut(s) 1079
Bme1390I CCNGG 5 cut(s) 135, 258, 901, 913, 1084
Bme18I GGWCC 1 cut(s) 435
BmgT120I GGNCC 6 cut(s) 103, 435, 878, 879, 897, 903
BmiI GGNNCC 3 cut(s) 774, 880, 923
BmrFI CCNGG 5 cut(s) 135, 258, 901, 913, 1084
BmsI GCATC 1 cut(s) 243
BpmI CTGGAG 2 cut(s) 800, 1066
Bpu10I CCTNAGC 1 cut(s) 1120
Bpu14I TTCGAA 1 cut(s) 376
BpuEI CTTGAG 1 cut(s) 139
BsaBI GATNNNNATC 1 cut(s) 486
BsaI GGTCTC 2 cut(s) 143, 536
BsaJI CCNNGG 6 cut(s) 134, 546, 900, 906, 912, 1083
Bsc4I CCNNNNNNNGG 4 cut(s) 358, 888, 912, 918
Bse1I ACTGG 2 cut(s) 126, 348
Bse3DI GCAATG 1 cut(s) 867
Bse8I GATNNNNATC 1 cut(s) 486
BseBI CCWGG 5 cut(s) 135, 258, 901, 913, 1084
BseDI CCNNGG 6 cut(s) 134, 546, 900, 906, 912, 1083
BseGI GGATG 8 cut(s) 487, 652, 664, 724, 733, 801, 856, 897
BseJI GATNNNNATC 1 cut(s) 486
BseLI CCNNNNNNNGG 4 cut(s) 358, 888, 912, 918
BseMI GCAATG 1 cut(s) 867
BseMII CTCAG 1 cut(s) 1134
BseNI ACTGG 2 cut(s) 126, 348
BseSI GKGCMC 1 cut(s) 882
BseXI GCAGC 3 cut(s) 88, 222, 504
BsgI GTGCAG 1 cut(s) 146
Bsh1236I CGCG 2 cut(s) 33, 941
BshFI GGCC 5 cut(s) 105, 880, 899, 905, 911
BsiHKAI GWGCWC 1 cut(s) 419
BslI CCNNNNNNNGG 4 cut(s) 358, 888, 912, 918
BsmAI GTCTC 4 cut(s) 143, 194, 536, 662
BsmBI CGTCTC 1 cut(s) 662
BsmI GAATGC 1 cut(s) 384
BsnI GGCC 5 cut(s) 105, 880, 899, 905, 911
Bso31I GGTCTC 2 cut(s) 143, 536
Bsp119I TTCGAA 1 cut(s) 376
Bsp120I GGGCCC 1 cut(s) 878
Bsp1286I GDGCHC 2 cut(s) 419, 882
Bsp143I GATC 5 cut(s) 37, 81, 88, 772, 964
Bsp19I CCATGG 1 cut(s) 906
BspACI CCGC 2 cut(s) 31, 162
BspANI GGCC 5 cut(s) 105, 880, 899, 905, 911
BspCNI CTCAG 1 cut(s) 1133
BspFNI CGCG 2 cut(s) 33, 941
BspLI GGNNCC 3 cut(s) 774, 880, 923
BspMAI CTGCAG 2 cut(s) 78, 522
BspMI ACCTGC 1 cut(s) 511
BspPI GGATC 4 cut(s) 83, 767, 780, 972
BspT104I TTCGAA 1 cut(s) 376
BspTI CTTAAG 1 cut(s) 845
BspTNI GGTCTC 2 cut(s) 143, 536
BsrDI GCAATG 1 cut(s) 867
BsrI ACTGG 2 cut(s) 126, 348
BssECI CCNNGG 6 cut(s) 134, 546, 900, 906, 912, 1083
BssMI GATC 5 cut(s) 37, 81, 88, 772, 964
BssT1I CCWWGG 1 cut(s) 906
Bst2UI CCWGG 5 cut(s) 135, 258, 901, 913, 1084
Bst4CI ACNGT 2 cut(s) 747, 760
BstAFI CTTAAG 1 cut(s) 845
BstBI TTCGAA 1 cut(s) 376
BstDEI CTNAG 1 cut(s) 1120
BstDSI CCRYGG 1 cut(s) 906
BstEII GGTNACC 1 cut(s) 1124
BstENI CCTNNNNNAGG 1 cut(s) 886
BstF5I GGATG 8 cut(s) 487, 652, 664, 724, 733, 801, 856, 897
BstFNI CGCG 2 cut(s) 33, 941
BstHHI GCGC 1 cut(s) 941
BstKTI GATC 5 cut(s) 40, 84, 91, 775, 967
BstMAI GTCTC 4 cut(s) 143, 194, 536, 662
BstMBI GATC 5 cut(s) 37, 81, 88, 772, 964
BstNI CCWGG 5 cut(s) 135, 258, 901, 913, 1084
BstNSI RCATGY 1 cut(s) 233
BstPI GGTNACC 1 cut(s) 1124
BstSCI CCNGG 5 cut(s) 133, 256, 899, 911, 1082
BstSFI CTRYAG 2 cut(s) 74, 518
BstSLI GKGCMC 1 cut(s) 882
BstUI CGCG 2 cut(s) 33, 941
BstV1I GCAGC 3 cut(s) 88, 222, 504
BstX2I RGATCY 2 cut(s) 772, 964
BstXI CCANNNNNNTGG 1 cut(s) 907
BstYI RGATCY 2 cut(s) 772, 964
BsuRI GGCC 5 cut(s) 105, 880, 899, 905, 911
BtgI CCRYGG 1 cut(s) 906
BtsCI GGATG 8 cut(s) 487, 652, 664, 724, 733, 801, 856, 897
BtsI GCAGTG 1 cut(s) 1074
BtsIMutI CAGTG 3 cut(s) 341, 765, 1074
BveI ACCTGC 1 cut(s) 511
CfoI GCGC 1 cut(s) 941
Cfr13I GGNCC 6 cut(s) 103, 435, 878, 879, 897, 903
Csp6I GTAC 3 cut(s) 509, 566, 1078
CviAII CATG 3 cut(s) 230, 907, 931
CviQI GTAC 3 cut(s) 509, 566, 1078
DdeI CTNAG 1 cut(s) 1120
DpnI GATC 5 cut(s) 39, 83, 90, 774, 966
DpnII GATC 5 cut(s) 37, 81, 88, 772, 964
EaeI YGGCCR 1 cut(s) 909
Eco130I CCWWGG 1 cut(s) 906
Eco24I GRGCYC 1 cut(s) 882
Eco31I GGTCTC 2 cut(s) 143, 536
Eco47I GGWCC 1 cut(s) 435
Eco57I CTGAAG 2 cut(s) 150, 989
Eco91I GGTNACC 1 cut(s) 1124
EcoNI CCTNNNNNAGG 1 cut(s) 886
EcoO109I RGGNCCY 3 cut(s) 103, 878, 879
EcoO65I GGTNACC 1 cut(s) 1124
EcoRII CCWGG 5 cut(s) 133, 256, 899, 911, 1082
EcoT14I CCWWGG 1 cut(s) 906
EcoT38I GRGCYC 1 cut(s) 882
ErhI CCWWGG 1 cut(s) 906
Esp3I CGTCTC 1 cut(s) 662
FaeI CATG 3 cut(s) 233, 910, 934
FalI AAGNNNNNCTT 2 cut(s) 148, 180
FatI CATG 3 cut(s) 229, 906, 930
FblI GTMKAC 1 cut(s) 245
Fnu4HI GCNGC 3 cut(s) 77, 211, 518
FokI GGATG 8 cut(s) 494, 659, 671, 731, 740, 808, 863, 904
FriOI GRGCYC 1 cut(s) 882
Fsp4HI GCNGC 3 cut(s) 77, 211, 518
FspBI CTAG 6 cut(s) 107, 290, 365, 404, 713, 741
GlaI GCGC 1 cut(s) 940
GluI GCNGC 3 cut(s) 77, 211, 518
GsuI CTGGAG 2 cut(s) 800, 1066
HaeIII GGCC 5 cut(s) 105, 880, 899, 905, 911
HhaI GCGC 1 cut(s) 941
Hin1II CATG 3 cut(s) 233, 910, 934
Hin6I GCGC 1 cut(s) 939
HinP1I GCGC 1 cut(s) 939
HincII GTYRAC 2 cut(s) 246, 708
HindII GTYRAC 2 cut(s) 246, 708
HindIII AAGCTT 1 cut(s) 839
HinfI GANTC 3 cut(s) 130, 140, 709
HphI GGTGA 2 cut(s) 1028, 1118
Hpy166II GTNNAC 6 cut(s) 11, 246, 409, 509, 708, 1030
Hpy188I TCNGA 3 cut(s) 272, 807, 969
Hpy188III TCNNGA 5 cut(s) 41, 92, 168, 779, 1058
Hpy8I GTNNAC 6 cut(s) 11, 246, 409, 509, 708, 1030
Hpy99I CGWCG 1 cut(s) 38
HpyCH4III ACNGT 2 cut(s) 747, 760
HpyCH4V TGCA 5 cut(s) 76, 127, 382, 520, 626
HpyF3I CTNAG 1 cut(s) 1120
Hsp92II CATG 3 cut(s) 233, 910, 934
HspAI GCGC 1 cut(s) 939
Kzo9I GATC 5 cut(s) 37, 81, 88, 772, 964
Lsp1109I GCAGC 3 cut(s) 88, 222, 504
LweI GCATC 1 cut(s) 243
MaeI CTAG 6 cut(s) 107, 290, 365, 404, 713, 741
MaeIII GTNAC 3 cut(s) 117, 956, 1124
MalI GATC 5 cut(s) 39, 83, 90, 774, 966
MboI GATC 5 cut(s) 37, 81, 88, 772, 964
MboII GAAGA 5 cut(s) 124, 326, 400, 482, 1084
MflI RGATCY 2 cut(s) 772, 964
MhlI GDGCHC 2 cut(s) 419, 882
MlsI TGGCCA 1 cut(s) 911
MluCI AATT 3 cut(s) 264, 476, 785
MluNI TGGCCA 1 cut(s) 911
MlyI GAGTC 1 cut(s) 703
MmeI TCCRAC 1 cut(s) 42
Mox20I TGGCCA 1 cut(s) 911
MroXI GAANNNNTTC 1 cut(s) 372
MscI TGGCCA 1 cut(s) 911
MseI TTAA 5 cut(s) 5, 299, 426, 846, 1135
Msp20I TGGCCA 1 cut(s) 911
MspCI CTTAAG 1 cut(s) 845
MspR9I CCNGG 5 cut(s) 135, 258, 901, 913, 1084
Mva1269I GAATGC 1 cut(s) 384
MvaI CCWGG 5 cut(s) 135, 258, 901, 913, 1084
MvnI CGCG 2 cut(s) 33, 941
NcoI CCATGG 1 cut(s) 906
NdeII GATC 5 cut(s) 37, 81, 88, 772, 964
NlaIII CATG 3 cut(s) 233, 910, 934
NlaIV GGNNCC 3 cut(s) 774, 880, 923
NmuCI GTSAC 1 cut(s) 1124
NspI RCATGY 1 cut(s) 233
NspV TTCGAA 1 cut(s) 376
PciI ACATGT 1 cut(s) 229
PctI GAATGC 1 cut(s) 384
PdmI GAANNNNTTC 1 cut(s) 372
PfeI GAWTC 2 cut(s) 130, 140
PkrI GCNGC 3 cut(s) 78, 212, 519
PleI GAGTC 1 cut(s) 703
PpsI GAGTC 1 cut(s) 703
PscI ACATGT 1 cut(s) 229
Psp6I CCWGG 5 cut(s) 133, 256, 899, 911, 1082
PspEI GGTNACC 1 cut(s) 1124
PspGI CCWGG 5 cut(s) 133, 256, 899, 911, 1082
PspN4I GGNNCC 3 cut(s) 774, 880, 923
PspOMI GGGCCC 1 cut(s) 878
PspPI GGNCC 6 cut(s) 103, 435, 878, 879, 897, 903
PsrI GAACNNNNNNTAC 2 cut(s) 390, 422
PstI CTGCAG 2 cut(s) 78, 522
PsuI RGATCY 2 cut(s) 772, 964
RsaI GTAC 3 cut(s) 510, 567, 1079
RsaNI GTAC 3 cut(s) 509, 566, 1078
SalI GTCGAC 1 cut(s) 244
SaqAI TTAA 5 cut(s) 5, 299, 426, 846, 1135
SatI GCNGC 3 cut(s) 77, 211, 518
Sau3AI GATC 5 cut(s) 37, 81, 88, 772, 964
Sau96I GGNCC 6 cut(s) 103, 435, 878, 879, 897, 903
ScaI AGTACT 1 cut(s) 1079
SchI GAGTC 1 cut(s) 703
ScrFI CCNGG 5 cut(s) 135, 258, 901, 913, 1084
SduI GDGCHC 2 cut(s) 419, 882
SfaNI GCATC 1 cut(s) 243
SfcI CTRYAG 2 cut(s) 74, 518
SfuI TTCGAA 1 cut(s) 376
SinI GGWCC 1 cut(s) 435
SmlI CTYRAG 2 cut(s) 154, 845
SmoI CTYRAG 2 cut(s) 154, 845
Sse9I AATT 3 cut(s) 264, 476, 785
SsiI CCGC 2 cut(s) 31, 162
SspI AATATT 1 cut(s) 1133
SspMI CTAG 6 cut(s) 107, 290, 365, 404, 713, 741
StyD4I CCNGG 5 cut(s) 133, 256, 899, 911, 1082
StyI CCWWGG 1 cut(s) 906
TaaI ACNGT 2 cut(s) 747, 760
TaqI TCGA 4 cut(s) 245, 376, 1012, 1046
TasI AATT 3 cut(s) 264, 476, 785
TatI WGTACW 2 cut(s) 508, 1077
TfiI GAWTC 2 cut(s) 130, 140
Tru1I TTAA 5 cut(s) 5, 299, 426, 846, 1135
Tru9I TTAA 5 cut(s) 5, 299, 426, 846, 1135
TscAI CASTG 3 cut(s) 348, 765, 1074
TseFI GTSAC 1 cut(s) 1124
TseI GCWGC 3 cut(s) 76, 210, 517
Tsp45I GTSAC 1 cut(s) 1124
TspDTI ATGAA 7 cut(s) 60, 65, 113, 401, 444, 663, 851
TspRI CASTG 3 cut(s) 348, 765, 1074
Vha464I CTTAAG 1 cut(s) 845
VpaK11BI GGWCC 1 cut(s) 435
XagI CCTNNNNNAGG 1 cut(s) 886
XceI RCATGY 1 cut(s) 233
XmiI GTMKAC 1 cut(s) 245
XmnI GAANNNNTTC 1 cut(s) 372
XspI CTAG 6 cut(s) 107, 290, 365, 404, 713, 741
ZrmI AGTACT 1 cut(s) 1079
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.