Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002316.1

Orthogroup ID

OG0000688

Physical Location & Seq

Genomic Coordinates Reverse (-)

189136 .. 191264

Gene Structure 2129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002316.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

atggcactggacttgatagcaggagcagcatttggggcgttgtatgaccgtgtttcgcgagcggtggacaagaaggtggcgttgaaagacagtctcaaagatatgaaacgcacattggagtccttaagaggacaggccggaatcattcgagggatacgagagttcaacgaggaactgagtctcccaaacgatggtatagatgatctcgaaacacaaatgattgaaggcgaaaaactcatttgcaggttgtcttgtcttggtatctacacctactgctgcacaagtggctgtgctgagcagcttgatgaattgaataggtgtctggaaagactcttggaaaccttgatgttgcagcaagcaagagatgtgaaggagatcttgaaagggtcaaggcaaacccgcgatgatgttgatgaaataaggcaaatgatgaagaagatactactccatattgaaggggattcggtggagtctccagcttcagaaaccactacagagaatgaaggaaatggcgaggaacaagtggcatcattagaaggacgagtggaagcagcatttcttgccctgtttggtattgttttggaagtgaaggacaagaatgtgatgtatagaccacttctgggatctatcaaatccagtctggactgcttaaagccattgatcgaagacatggcacaaggaaacaggaggcagttgaatgtactgagagcgcaggttgcaagcgatgtgatgaagaccacagcttcgataaggagtatacagaagatgatcaagcgaattgaggagagtggtgtcatgaagaatcaaatggaaatgaatggtccgtgtgaagtagttgaggcttcatcccctgatgaaaagaatgagggtttagttgaaccttcatcccctgatgaacagaatgagggtttagttgaacctgagagcgcaggttgcaagcgatgtgatgaagaccacagcttcgataaggagtatacagaagatgatcaagcgaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

332

Amino Acids

36.97

Weight (kDa)

4.65

Isoelectric Point (pI)

47.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09820 FvH4_2g17160 FvH4_2g17160
malus_domestica	MD02G1107100.v1.1 MD02G1107300.v1.1 MD05G1144900.v1.1 MD10G1144700.v1.1 MD15G1226500.v1.1
prunus_persica	Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.8G183000_v2.0.a1
pyrus_communis	pycom05g14000 pycom10g12440 pycom15g20140
rosa_chinensis	RchiOBHm_Chr2g0096621 RchiOBHm_Chr6g0281601 RchiOBHm_Chr6g0281651 RchiOBHm_Chr7g0212121
rosa_laevigata	RLG00000002926 RLG00000002927 RLG00000002933 RLG00000008638 RLG00000012954 RLG00000012955 RLG00000016656
rosa_multiflora	Rmu_co8091766.1_g000001 Rmu_co8287847.1_g000001 Rmu_co8297221.1_g000001 Rmu_co8485327.1_g000001 Rmu_co8512767.1_g000001 Rmu_sc0002316.1_g000041 Rmu_sc0003565.1_g000009 Rmu_sc0014556.1_g000004 Rmu_sc0027573.1_g000001 Rmu_sc0030028.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026540 Rroxscaffold_2G00145470 Rroxscaffold_3G00247100 Rroxscaffold_3G00247110 Rroxscaffold_3G00247120 Rroxscaffold_5G00362680 Rroxscaffold_5G00362710 Rroxscaffold_7G00186950
rosa_rugosa	Rorug02G0059000 Rorug02G0059100 Rorug06G0142300 Rorug07G0131000 Rorug07G0131100
rosa_samantha	Rh1DG155700 Rh2AG106500 Rh2AG171500 Rh2BG108800 Rh2BG178900 Rh2CG110600 Rh2CG176400 Rh2DG110100 Rh2DG177600 Rh4BG120600 Rh6BG258300 Rh6CG257100 Rh6DG249200 Rh6DG249300 Rh7AG264100 Rh7AG264200 Rh7BG257800 Rh7BG257900 Rh7BG258000 Rh7BG258100 Rh7CG280600 Rh7CG280700 Rh7DG270600
rosa_wichuraiana	Rw2G008240 Rw6G022110 Rw7G022540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	234, 703, 920
AccB7I	CCANNNNNTGG	1 cut(s)	191
AccBSI	CCGCTC	1 cut(s)	62
AccI	GTMKAC	2 cut(s)	757, 974
AccII	CGCG	2 cut(s)	58, 402
AciI	CCGC	2 cut(s)	62, 400
AclWI	GGATC	1 cut(s)	631
AcuI	CTGAAG	1 cut(s)	465
AfaI	GTAC	1 cut(s)	702
AfiI	CCNNNNNNNGG	2 cut(s)	191, 620
AflII	CTTAAG	1 cut(s)	124
AgsI	TTSAA	9 cut(s)	85, 166, 224, 313, 382, 455, 697, 878, 917
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
AloI	GAACNNNNNNTCC	2 cut(s)	165, 197
AluBI	AGCT	4 cut(s)	301, 479, 743, 960
AluI	AGCT	4 cut(s)	301, 479, 743, 960
Alw26I	GTCTC	3 cut(s)	98, 185, 477
AlwI	GGATC	1 cut(s)	631
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	5 cut(s)	26, 276, 298, 352, 551
ArsI	GACNNNNNNTTYG	4 cut(s)	727, 759, 944, 976
AspLEI	GCGC	2 cut(s)	712, 929
AspS9I	GGNCC	1 cut(s)	821
AvaII	GGWCC	1 cut(s)	821
BaeI	ACNNNNGTAYC	2 cut(s)	146, 179
BbsI	GAAGAC	3 cut(s)	672, 740, 957
BbvI	GCAGC	5 cut(s)	38, 263, 310, 364, 563
BccI	CCATC	1 cut(s)	185
BciVI	GTATCC	1 cut(s)	147
BclI	TGATCA	2 cut(s)	768, 985
BcoDI	GTCTC	3 cut(s)	98, 185, 477
BfmI	CTRYAG	1 cut(s)	492
BfrI	CTTAAG	1 cut(s)	124
BfuAI	ACCTGC	3 cut(s)	234, 703, 920
BfuI	GTATCC	1 cut(s)	147
BglII	AGATCT	1 cut(s)	375
BisI	GCNGC	5 cut(s)	27, 277, 299, 353, 552
BlpI	GCTNAGC	1 cut(s)	294
BlsI	GCNGC	5 cut(s)	28, 278, 300, 354, 553
Bme18I	GGWCC	1 cut(s)	821
BmgT120I	GGNCC	1 cut(s)	821
BmsI	GCATC	1 cut(s)	536
BpiI	GAAGAC	3 cut(s)	672, 740, 957
BpmI	CTGGAG	1 cut(s)	459
Bpu1102I	GCTNAGC	1 cut(s)	294
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 620
Bse1I	ACTGG	2 cut(s)	12, 636
BseGI	GGATG	2 cut(s)	845, 884
BseLI	CCNNNNNNNGG	2 cut(s)	191, 620
BseMII	CTCAG	4 cut(s)	167, 285, 695, 912
BseNI	ACTGG	2 cut(s)	12, 636
BseRI	GAGGAG	1 cut(s)	797
BseXI	GCAGC	5 cut(s)	38, 263, 310, 364, 563
BsgI	GTGCAG	1 cut(s)	262
Bsh1236I	CGCG	2 cut(s)	58, 402
BshFI	GGCC	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	138
BslI	CCNNNNNNNGG	2 cut(s)	191, 620
BsmAI	GTCTC	3 cut(s)	98, 185, 477
BsnI	GGCC	1 cut(s)	137
Bsp143I	GATC	6 cut(s)	202, 375, 623, 660, 768, 985
Bsp1720I	GCTNAGC	1 cut(s)	294
Bsp68I	TCGCGA	1 cut(s)	58
BspACI	CCGC	2 cut(s)	62, 400
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	4 cut(s)	168, 286, 696, 913
BspFNI	CGCG	2 cut(s)	58, 402
BspHI	TCATGA	1 cut(s)	795
BspMI	ACCTGC	3 cut(s)	234, 703, 920
BspPI	GGATC	1 cut(s)	631
BspTI	CTTAAG	1 cut(s)	124
BsrBI	CCGCTC	1 cut(s)	62
BsrI	ACTGG	2 cut(s)	12, 636
BssMI	GATC	6 cut(s)	202, 375, 623, 660, 768, 985
BssNAI	GTATAC	2 cut(s)	758, 975
Bst1107I	GTATAC	2 cut(s)	758, 975
Bst4CI	ACNGT	2 cut(s)	50, 92
BstAFI	CTTAAG	1 cut(s)	124
BstAPI	GCANNNNNTGC	1 cut(s)	560
BstC8I	GCNNGC	4 cut(s)	60, 357, 721, 938
BstDEI	CTNAG	4 cut(s)	176, 294, 704, 921
BstF5I	GGATG	2 cut(s)	845, 884
BstFNI	CGCG	2 cut(s)	58, 402
BstHHI	GCGC	2 cut(s)	712, 929
BstKTI	GATC	6 cut(s)	205, 378, 626, 663, 771, 988
BstMAI	GTCTC	3 cut(s)	98, 185, 477
BstMBI	GATC	6 cut(s)	202, 375, 623, 660, 768, 985
BstMWI	GCNNNNNNNGC	6 cut(s)	26, 35, 285, 560, 716, 933
BstSFI	CTRYAG	1 cut(s)	492
BstUI	CGCG	2 cut(s)	58, 402
BstV1I	GCAGC	5 cut(s)	38, 263, 310, 364, 563
BstV2I	GAAGAC	3 cut(s)	672, 740, 957
BstX2I	RGATCY	2 cut(s)	375, 623
BstYI	RGATCY	2 cut(s)	375, 623
BstZ17I	GTATAC	2 cut(s)	758, 975
BsuI	GTATCC	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	137
BtgZI	GCGATG	3 cut(s)	417, 738, 955
BtsCI	GGATG	2 cut(s)	845, 884
BtsIMutI	CAGTG	1 cut(s)	5
BtuMI	TCGCGA	1 cut(s)	58
BveI	ACCTGC	3 cut(s)	234, 703, 920
Cac8I	GCNNGC	4 cut(s)	60, 357, 721, 938
CciI	TCATGA	1 cut(s)	795
CfoI	GCGC	2 cut(s)	712, 929
Cfr13I	GGNCC	1 cut(s)	821
Csp6I	GTAC	1 cut(s)	701
CviAII	CATG	2 cut(s)	670, 796
CviJI	RGCY	8 cut(s)	137, 288, 301, 479, 655, 743, 842, 960
CviKI_1	RGCY	8 cut(s)	137, 288, 301, 479, 655, 743, 842, 960
CviQI	GTAC	1 cut(s)	701
DdeI	CTNAG	4 cut(s)	176, 294, 704, 921
DpnI	GATC	6 cut(s)	204, 377, 625, 662, 770, 987
DpnII	GATC	6 cut(s)	202, 375, 623, 660, 768, 985
Eco47I	GGWCC	1 cut(s)	821
Eco57I	CTGAAG	1 cut(s)	465
FaeI	CATG	2 cut(s)	673, 799
FaiI	YATR	9 cut(s)	45, 104, 197, 450, 609, 671, 758, 797, 975
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FatI	CATG	2 cut(s)	669, 795
FauI	CCCGC	1 cut(s)	407
FbaI	TGATCA	2 cut(s)	768, 985
FblI	GTMKAC	2 cut(s)	757, 974
Fnu4HI	GCNGC	5 cut(s)	27, 277, 299, 353, 552
FokI	GGATG	2 cut(s)	832, 871
Fsp4HI	GCNGC	5 cut(s)	27, 277, 299, 353, 552
GlaI	GCGC	2 cut(s)	711, 928
GluI	GCNGC	5 cut(s)	27, 277, 299, 353, 552
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	1 cut(s)	138
HhaI	GCGC	2 cut(s)	712, 929
Hin1II	CATG	2 cut(s)	673, 799
Hin6I	GCGC	2 cut(s)	710, 927
HinP1I	GCGC	2 cut(s)	710, 927
HinfI	GANTC	7 cut(s)	119, 141, 178, 330, 461, 470, 802
HpaII	CCGG	1 cut(s)	138
Hpy166II	GTNNAC	3 cut(s)	67, 758, 975
Hpy188I	TCNGA	1 cut(s)	484
Hpy188III	TCNNGA	6 cut(s)	57, 206, 323, 379, 641, 796
Hpy8I	GTNNAC	3 cut(s)	67, 758, 975
HpyAV	CCTTC	8 cut(s)	67, 218, 364, 449, 497, 530, 583, 891
HpyCH4III	ACNGT	2 cut(s)	50, 92
HpyCH4V	TGCA	5 cut(s)	243, 279, 352, 719, 936
HpyF10VI	GCNNNNNNNGC	6 cut(s)	26, 35, 285, 560, 716, 933
HpyF3I	CTNAG	4 cut(s)	176, 294, 704, 921
Hsp92II	CATG	2 cut(s)	673, 799
HspAI	GCGC	2 cut(s)	710, 927
Ksp22I	TGATCA	2 cut(s)	768, 985
Kzo9I	GATC	6 cut(s)	202, 375, 623, 660, 768, 985
LmnI	GCTCC	1 cut(s)	23
Lsp1109I	GCAGC	5 cut(s)	38, 263, 310, 364, 563
LweI	GCATC	1 cut(s)	536
MalI	GATC	6 cut(s)	204, 377, 625, 662, 770, 987
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	6 cut(s)	202, 375, 623, 660, 768, 985
MboII	GAAGA	8 cut(s)	445, 448, 677, 745, 775, 811, 962, 992
MflI	RGATCY	2 cut(s)	375, 623
MluCI	AATT	3 cut(s)	308, 777, 994
MlyI	GAGTC	4 cut(s)	128, 187, 324, 479
MnlI	CCTC	9 cut(s)	122, 143, 163, 508, 681, 775, 832, 859, 898
MseI	TTAA	2 cut(s)	125, 650
MspCI	CTTAAG	1 cut(s)	124
MspI	CCGG	1 cut(s)	138
MvnI	CGCG	2 cut(s)	58, 402
MwoI	GCNNNNNNNGC	6 cut(s)	26, 35, 285, 560, 716, 933
NdeII	GATC	6 cut(s)	202, 375, 623, 660, 768, 985
NlaIII	CATG	2 cut(s)	673, 799
NruI	TCGCGA	1 cut(s)	58
PagI	TCATGA	1 cut(s)	795
PcsI	WCGNNNNNNNCGW	1 cut(s)	154
PfeI	GAWTC	3 cut(s)	141, 461, 802
PflMI	CCANNNNNTGG	1 cut(s)	191
PkrI	GCNGC	5 cut(s)	28, 278, 300, 354, 553
PleI	GAGTC	4 cut(s)	127, 186, 324, 478
PpsI	GAGTC	4 cut(s)	127, 186, 324, 478
PspPI	GGNCC	1 cut(s)	821
PsuI	RGATCY	2 cut(s)	375, 623
RruI	TCGCGA	1 cut(s)	58
RsaI	GTAC	1 cut(s)	702
RsaNI	GTAC	1 cut(s)	701
SaqAI	TTAA	2 cut(s)	125, 650
SatI	GCNGC	5 cut(s)	27, 277, 299, 353, 552
Sau3AI	GATC	6 cut(s)	202, 375, 623, 660, 768, 985
Sau96I	GGNCC	1 cut(s)	821
SchI	GAGTC	4 cut(s)	128, 187, 324, 479
SfaNI	GCATC	1 cut(s)	536
SfcI	CTRYAG	1 cut(s)	492
SinI	GGWCC	1 cut(s)	821
SmlI	CTYRAG	1 cut(s)	124
SmoI	CTYRAG	1 cut(s)	124
Sse9I	AATT	3 cut(s)	308, 777, 994
SsiI	CCGC	2 cut(s)	62, 400
TaaI	ACNGT	2 cut(s)	50, 92
TaqI	TCGA	5 cut(s)	148, 207, 663, 746, 963
TasI	AATT	3 cut(s)	308, 777, 994
TatI	WGTACW	1 cut(s)	700
TfiI	GAWTC	3 cut(s)	141, 461, 802
Tru1I	TTAA	2 cut(s)	125, 650
Tru9I	TTAA	2 cut(s)	125, 650
TscAI	CASTG	1 cut(s)	12
TseI	GCWGC	5 cut(s)	26, 276, 298, 352, 551
TspGWI	ACGGA	1 cut(s)	813
TspRI	CASTG	1 cut(s)	12
Van91I	CCANNNNNTGG	1 cut(s)	191
Vha464I	CTTAAG	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	821
XmiI	GTMKAC	2 cut(s)	757, 974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.