polyadenylate-binding protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RPW8 | PF05659 | 6 - 136 | 4.2e-13 | Arabidopsis broad-spectrum mildew resistance protein RPW8 |
| RPW8 | PF05659 | 181 - 308 | 1.8e-20 | Arabidopsis broad-spectrum mildew resistance protein RPW8 |
| RRM_1 | PF00076 | 428 - 498 | 2.4e-15 | RNA recognition motif |
| RRM_1 | PF00076 | 538 - 601 | 7.5e-17 | RNA recognition motif |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 278 |
| Acc36I | ACCTGC | 2 cut(s) | 234, 278 |
| AccB1I | GGYRCC | 1 cut(s) | 1985 |
| AccBSI | CCGCTC | 1 cut(s) | 1874 |
| AccI | GTMKAC | 2 cut(s) | 907, 1564 |
| AciI | CCGC | 5 cut(s) | 62, 751, 1110, 1365, 1874 |
| AclWI | GGATC | 3 cut(s) | 625, 1159, 1625 |
| AcoI | YGGCCR | 1 cut(s) | 1393 |
| AcsI | RAATTY | 2 cut(s) | 1160, 1186 |
| AcuI | CTGAAG | 2 cut(s) | 459, 818 |
| AcyI | GRCGYC | 1 cut(s) | 521 |
| AfaI | GTAC | 6 cut(s) | 684, 852, 1243, 1390, 1728, 1880 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 449, 450, 451, 614, 1221, 1402, 1574, 1982 |
| AflII | CTTAAG | 1 cut(s) | 124 |
| AjnI | CCWGG | 1 cut(s) | 1860 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 98, 130, 440, 472, 1043, 1075 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 165, 197, 1200, 1232 |
| AluBI | AGCT | 9 cut(s) | 298, 473, 698, 745, 893, 1117, 1181, 1955, 2004 |
| AluI | AGCT | 9 cut(s) | 298, 473, 698, 745, 893, 1117, 1181, 1955, 2004 |
| Alw21I | GWGCWC | 1 cut(s) | 761 |
| Alw26I | GTCTC | 5 cut(s) | 98, 185, 471, 878, 1287 |
| AlwI | GGATC | 3 cut(s) | 625, 1159, 1625 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 482, 1958 |
| AoxI | GGCC | 3 cut(s) | 135, 1393, 1487 |
| ApoI | RAATTY | 2 cut(s) | 1160, 1186 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 877, 909 |
| AspA2I | CCTAGG | 1 cut(s) | 1514 |
| AspLEI | GCGC | 2 cut(s) | 779, 1970 |
| AspS9I | GGNCC | 4 cut(s) | 748, 971, 1502, 1889 |
| AsuHPI | GGTGA | 3 cut(s) | 439, 1124, 1259 |
| AvaII | GGWCC | 4 cut(s) | 748, 971, 1502, 1889 |
| AvrII | CCTAGG | 1 cut(s) | 1514 |
| BaeGI | GKGCMC | 1 cut(s) | 1990 |
| BanI | GGYRCC | 1 cut(s) | 1985 |
| BbsI | GAAGAC | 2 cut(s) | 666, 824 |
| Bbv12I | GWGCWC | 1 cut(s) | 761 |
| BccI | CCATC | 2 cut(s) | 185, 1583 |
| BceAI | ACGGC | 1 cut(s) | 1380 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 15, 49 |
| BciT130I | CCWGG | 1 cut(s) | 1862 |
| BclI | TGATCA | 1 cut(s) | 918 |
| BcoDI | GTCTC | 5 cut(s) | 98, 185, 471, 878, 1287 |
| BfaI | CTAG | 4 cut(s) | 252, 707, 1341, 1515 |
| BfmI | CTRYAG | 5 cut(s) | 486, 1155, 1176, 1302, 1950 |
| BfoI | RGCGCY | 1 cut(s) | 1971 |
| BfrI | CTTAAG | 1 cut(s) | 124 |
| BfuAI | ACCTGC | 2 cut(s) | 234, 278 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1757 |
| BglII | AGATCT | 2 cut(s) | 372, 1651 |
| BlnI | CCTAGG | 1 cut(s) | 1514 |
| BlpI | GCTNAGC | 1 cut(s) | 291 |
| BmcAI | AGTACT | 2 cut(s) | 1243, 1390 |
| Bme1390I | CCNGG | 1 cut(s) | 1862 |
| Bme18I | GGWCC | 4 cut(s) | 748, 971, 1502, 1889 |
| BmgT120I | GGNCC | 4 cut(s) | 748, 971, 1502, 1889 |
| BmiI | GGNNCC | 2 cut(s) | 1580, 1987 |
| BmrFI | CCNGG | 1 cut(s) | 1862 |
| BmrI | ACTGGG | 1 cut(s) | 1237 |
| BmsI | GCATC | 3 cut(s) | 814, 1372, 1585 |
| BmuI | ACTGGG | 1 cut(s) | 1237 |
| BpiI | GAAGAC | 2 cut(s) | 666, 824 |
| BpmI | CTGGAG | 2 cut(s) | 29, 453 |
| Bpu10I | CCTNAGC | 1 cut(s) | 699 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 291 |
| BpuEI | CTTGAG | 3 cut(s) | 361, 428, 836 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1650 |
| BsaHI | GRCGYC | 1 cut(s) | 521 |
| BsaI | GGTCTC | 1 cut(s) | 878 |
| BsaJI | CCNNGG | 4 cut(s) | 1514, 1573, 1752, 1861 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 165, 195, 1878, 1908 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 449, 450, 451, 614, 1221, 1402, 1574, 1982 |
| Bse1I | ACTGG | 8 cut(s) | 12, 690, 772, 1232, 1249, 1386, 1396, 1703 |
| Bse3DI | GCAATG | 1 cut(s) | 1760 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1650 |
| BseBI | CCWGG | 1 cut(s) | 1862 |
| BseDI | CCNNGG | 4 cut(s) | 1514, 1573, 1752, 1861 |
| BseGI | GGATG | 4 cut(s) | 829, 995, 1034, 1721 |
| BseJI | GATNNNNATC | 1 cut(s) | 1650 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 449, 450, 451, 614, 1221, 1402, 1574, 1982 |
| BseMI | GCAATG | 1 cut(s) | 1760 |
| BseMII | CTCAG | 7 cut(s) | 167, 282, 845, 1173, 1669, 1685, 1794 |
| BseNI | ACTGG | 8 cut(s) | 12, 690, 772, 1232, 1249, 1386, 1396, 1703 |
| BseRI | GAGGAG | 2 cut(s) | 947, 1769 |
| BseSI | GKGCMC | 1 cut(s) | 1990 |
| BsgI | GTGCAG | 2 cut(s) | 250, 759 |
| BshFI | GGCC | 3 cut(s) | 137, 1395, 1489 |
| BshNI | GGYRCC | 1 cut(s) | 1985 |
| BsiHKAI | GWGCWC | 1 cut(s) | 761 |
| BsiSI | CCGG | 1 cut(s) | 138 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 449, 450, 451, 614, 1221, 1402, 1574, 1982 |
| BsmAI | GTCTC | 5 cut(s) | 98, 185, 471, 878, 1287 |
| BsmI | GAATGC | 1 cut(s) | 726 |
| BsnI | GGCC | 3 cut(s) | 137, 1395, 1489 |
| Bso31I | GGTCTC | 1 cut(s) | 878 |
| Bsp1286I | GDGCHC | 2 cut(s) | 761, 1990 |
| Bsp1407I | TGTACA | 1 cut(s) | 1726 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 291 |
| BspACI | CCGC | 5 cut(s) | 62, 751, 1110, 1365, 1874 |
| BspANI | GGCC | 3 cut(s) | 137, 1395, 1489 |
| BspCNI | CTCAG | 7 cut(s) | 168, 283, 846, 1174, 1668, 1684, 1793 |
| BspHI | TCATGA | 2 cut(s) | 945, 1042 |
| BspLI | GGNNCC | 2 cut(s) | 1580, 1987 |
| BspMAI | CTGCAG | 1 cut(s) | 1954 |
| BspMI | ACCTGC | 2 cut(s) | 234, 278 |
| BspPI | GGATC | 3 cut(s) | 625, 1159, 1625 |
| BspT107I | GGYRCC | 1 cut(s) | 1985 |
| BspTI | CTTAAG | 1 cut(s) | 124 |
| BspTNI | GGTCTC | 1 cut(s) | 878 |
| BsrBI | CCGCTC | 1 cut(s) | 1874 |
| BsrDI | GCAATG | 1 cut(s) | 1760 |
| BsrGI | TGTACA | 1 cut(s) | 1726 |
| BsrI | ACTGG | 8 cut(s) | 12, 690, 772, 1232, 1249, 1386, 1396, 1703 |
| BssECI | CCNNGG | 4 cut(s) | 1514, 1573, 1752, 1861 |
| BssNAI | GTATAC | 2 cut(s) | 908, 1565 |
| BssNI | GRCGYC | 1 cut(s) | 521 |
| BssT1I | CCWWGG | 2 cut(s) | 1514, 1573 |
| Bst1107I | GTATAC | 2 cut(s) | 908, 1565 |
| Bst2UI | CCWGG | 1 cut(s) | 1862 |
| Bst4CI | ACNGT | 5 cut(s) | 92, 1303, 1412, 1801, 1985 |
| Bst6I | CTCTTC | 2 cut(s) | 615, 1119 |
| BstACI | GRCGYC | 1 cut(s) | 521 |
| BstAFI | CTTAAG | 1 cut(s) | 124 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 273, 554, 1958 |
| BstAUI | TGTACA | 1 cut(s) | 1726 |
| BstC8I | GCNNGC | 4 cut(s) | 60, 871, 1487, 1793 |
| BstDEI | CTNAG | 8 cut(s) | 176, 291, 699, 854, 1182, 1655, 1671, 1780 |
| BstF5I | GGATG | 4 cut(s) | 829, 995, 1034, 1721 |
| BstH2I | RGCGCY | 1 cut(s) | 1971 |
| BstHHI | GCGC | 2 cut(s) | 779, 1970 |
| BstMAI | GTCTC | 5 cut(s) | 98, 185, 471, 878, 1287 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 273, 282, 554, 1757, 1874, 1955, 1958, 1967 |
| BstNI | CCWGG | 1 cut(s) | 1862 |
| BstNSI | RCATGY | 3 cut(s) | 831, 1175, 1945 |
| BstSCI | CCNGG | 1 cut(s) | 1860 |
| BstSFI | CTRYAG | 5 cut(s) | 486, 1155, 1176, 1302, 1950 |
| BstSLI | GKGCMC | 1 cut(s) | 1990 |
| BstV2I | GAAGAC | 2 cut(s) | 666, 824 |
| BstX2I | RGATCY | 4 cut(s) | 372, 617, 1151, 1651 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1589 |
| BstYI | RGATCY | 4 cut(s) | 372, 617, 1151, 1651 |
| BstZ17I | GTATAC | 2 cut(s) | 908, 1565 |
| BsuRI | GGCC | 3 cut(s) | 137, 1395, 1489 |
| BtgZI | GCGATG | 1 cut(s) | 888 |
| BtsCI | GGATG | 4 cut(s) | 829, 995, 1034, 1721 |
| BtsIMutI | CAGTG | 1 cut(s) | 5 |
| BveI | ACCTGC | 2 cut(s) | 234, 278 |
| Cac8I | GCNNGC | 4 cut(s) | 60, 871, 1487, 1793 |
| CaiI | CAGNNNCTG | 2 cut(s) | 482, 1958 |
| CciI | TCATGA | 2 cut(s) | 945, 1042 |
| CfoI | GCGC | 2 cut(s) | 779, 1970 |
| Cfr13I | GGNCC | 4 cut(s) | 748, 971, 1502, 1889 |
| CseI | GACGC | 1 cut(s) | 510 |
| Csp6I | GTAC | 6 cut(s) | 683, 851, 1242, 1389, 1727, 1879 |
| CviQI | GTAC | 6 cut(s) | 683, 851, 1242, 1389, 1727, 1879 |
| DdeI | CTNAG | 8 cut(s) | 176, 291, 699, 854, 1182, 1655, 1671, 1780 |
| EaeI | YGGCCR | 1 cut(s) | 1393 |
| Eam1104I | CTCTTC | 2 cut(s) | 615, 1119 |
| EarI | CTCTTC | 2 cut(s) | 615, 1119 |
| Eco130I | CCWWGG | 2 cut(s) | 1514, 1573 |
| Eco147I | AGGCCT | 1 cut(s) | 1489 |
| Eco31I | GGTCTC | 1 cut(s) | 878 |
| Eco32I | GATATC | 1 cut(s) | 1532 |
| Eco47I | GGWCC | 4 cut(s) | 748, 971, 1502, 1889 |
| Eco57I | CTGAAG | 2 cut(s) | 459, 818 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1889 |
| EcoRI | GAATTC | 2 cut(s) | 1160, 1186 |
| EcoRII | CCWGG | 1 cut(s) | 1860 |
| EcoRV | GATATC | 1 cut(s) | 1532 |
| EcoT14I | CCWWGG | 2 cut(s) | 1514, 1573 |
| EcoT22I | ATGCAT | 2 cut(s) | 726, 829 |
| ErhI | CCWWGG | 2 cut(s) | 1514, 1573 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 359, 391 |
| FauNDI | CATATG | 2 cut(s) | 726, 1963 |
| FbaI | TGATCA | 1 cut(s) | 918 |
| FblI | GTMKAC | 2 cut(s) | 907, 1564 |
| FokI | GGATG | 4 cut(s) | 836, 982, 1021, 1728 |
| FspBI | CTAG | 4 cut(s) | 252, 707, 1341, 1515 |
| GlaI | GCGC | 2 cut(s) | 778, 1969 |
| GsuI | CTGGAG | 2 cut(s) | 29, 453 |
| HaeII | RGCGCY | 1 cut(s) | 1971 |
| HaeIII | GGCC | 3 cut(s) | 137, 1395, 1489 |
| HapII | CCGG | 1 cut(s) | 138 |
| HgaI | GACGC | 1 cut(s) | 510 |
| HhaI | GCGC | 2 cut(s) | 779, 1970 |
| Hin1I | GRCGYC | 1 cut(s) | 521 |
| Hin6I | GCGC | 2 cut(s) | 777, 1968 |
| HinP1I | GCGC | 2 cut(s) | 777, 1968 |
| HinfI | GANTC | 5 cut(s) | 119, 178, 327, 464, 952 |
| HpaII | CCGG | 1 cut(s) | 138 |
| HphI | GGTGA | 3 cut(s) | 439, 1124, 1259 |
| Hpy166II | GTNNAC | 4 cut(s) | 67, 908, 1565, 1981 |
| Hpy8I | GTNNAC | 4 cut(s) | 67, 908, 1565, 1981 |
| Hpy99I | CGWCG | 2 cut(s) | 1224, 1433 |
| HpyAV | CCTTC | 8 cut(s) | 218, 361, 524, 577, 856, 1041, 1097, 1225 |
| HpyCH4III | ACNGT | 5 cut(s) | 92, 1303, 1412, 1801, 1985 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 273, 282, 554, 1757, 1874, 1955, 1958, 1967 |
| HpyF3I | CTNAG | 8 cut(s) | 176, 291, 699, 854, 1182, 1655, 1671, 1780 |
| Hsp92I | GRCGYC | 1 cut(s) | 521 |
| HspAI | GCGC | 2 cut(s) | 777, 1968 |
| Ksp22I | TGATCA | 1 cut(s) | 918 |
| LmnI | GCTCC | 4 cut(s) | 23, 764, 1273, 1871 |
| LweI | GCATC | 3 cut(s) | 814, 1372, 1585 |
| MaeI | CTAG | 4 cut(s) | 252, 707, 1341, 1515 |
| MaeIII | GTNAC | 5 cut(s) | 435, 1247, 1309, 1443, 1639 |
| MbiI | CCGCTC | 1 cut(s) | 1874 |
| MboII | GAAGA | 9 cut(s) | 442, 602, 671, 805, 824, 925, 961, 1136, 1661 |
| MflI | RGATCY | 4 cut(s) | 372, 617, 1151, 1651 |
| MhlI | GDGCHC | 2 cut(s) | 761, 1990 |
| MluCI | AATT | 7 cut(s) | 305, 413, 927, 1160, 1186, 1730, 1785 |
| MlyI | GAGTC | 4 cut(s) | 128, 187, 321, 473 |
| MmeI | TCCRAC | 5 cut(s) | 801, 1202, 1600, 1687, 1828 |
| Mph1103I | ATGCAT | 2 cut(s) | 726, 829 |
| MseI | TTAA | 4 cut(s) | 125, 1193, 1359, 1695 |
| MspA1I | CMGCKG | 3 cut(s) | 1110, 1181, 1955 |
| MspCI | CTTAAG | 1 cut(s) | 124 |
| MspI | CCGG | 1 cut(s) | 138 |
| MspR9I | CCNGG | 1 cut(s) | 1862 |
| Mva1269I | GAATGC | 1 cut(s) | 726 |
| MvaI | CCWGG | 1 cut(s) | 1862 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 273, 282, 554, 1757, 1874, 1955, 1958, 1967 |
| NdeI | CATATG | 2 cut(s) | 726, 1963 |
| NlaIV | GGNNCC | 2 cut(s) | 1580, 1987 |
| NmeAIII | GCCGAG | 1 cut(s) | 1777 |
| NmuCI | GTSAC | 2 cut(s) | 1247, 1443 |
| NsiI | ATGCAT | 2 cut(s) | 726, 829 |
| NspI | RCATGY | 3 cut(s) | 831, 1175, 1945 |
| PagI | TCATGA | 2 cut(s) | 945, 1042 |
| PaqCI | CACCTGC | 1 cut(s) | 278 |
| PceI | AGGCCT | 1 cut(s) | 1489 |
| PctI | GAATGC | 1 cut(s) | 726 |
| PfeI | GAWTC | 1 cut(s) | 952 |
| PleI | GAGTC | 4 cut(s) | 127, 186, 321, 472 |
| PpsI | GAGTC | 4 cut(s) | 127, 186, 321, 472 |
| PpuMI | RGGWCCY | 1 cut(s) | 1889 |
| Psp5II | RGGWCCY | 1 cut(s) | 1889 |
| Psp6I | CCWGG | 1 cut(s) | 1860 |
| PspGI | CCWGG | 1 cut(s) | 1860 |
| PspN4I | GGNNCC | 2 cut(s) | 1580, 1987 |
| PspPI | GGNCC | 4 cut(s) | 748, 971, 1502, 1889 |
| PspPPI | RGGWCCY | 1 cut(s) | 1889 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1381, 1413 |
| PstI | CTGCAG | 1 cut(s) | 1954 |
| PstNI | CAGNNNCTG | 2 cut(s) | 482, 1958 |
| PsuI | RGATCY | 4 cut(s) | 372, 617, 1151, 1651 |
| PvuII | CAGCTG | 2 cut(s) | 1181, 1955 |
| RsaI | GTAC | 6 cut(s) | 684, 852, 1243, 1390, 1728, 1880 |
| RsaNI | GTAC | 6 cut(s) | 683, 851, 1242, 1389, 1727, 1879 |
| SaqAI | TTAA | 4 cut(s) | 125, 1193, 1359, 1695 |
| Sau96I | GGNCC | 4 cut(s) | 748, 971, 1502, 1889 |
| ScaI | AGTACT | 2 cut(s) | 1243, 1390 |
| SchI | GAGTC | 4 cut(s) | 128, 187, 321, 473 |
| ScrFI | CCNGG | 1 cut(s) | 1862 |
| SduI | GDGCHC | 2 cut(s) | 761, 1990 |
| SfaNI | GCATC | 3 cut(s) | 814, 1372, 1585 |
| SfcI | CTRYAG | 5 cut(s) | 486, 1155, 1176, 1302, 1950 |
| SinI | GGWCC | 4 cut(s) | 748, 971, 1502, 1889 |
| SmlI | CTYRAG | 4 cut(s) | 124, 340, 407, 815 |
| SmoI | CTYRAG | 4 cut(s) | 124, 340, 407, 815 |
| Sse9I | AATT | 7 cut(s) | 305, 413, 927, 1160, 1186, 1730, 1785 |
| SseBI | AGGCCT | 1 cut(s) | 1489 |
| SsiI | CCGC | 5 cut(s) | 62, 751, 1110, 1365, 1874 |
| SspI | AATATT | 1 cut(s) | 1614 |
| SspMI | CTAG | 4 cut(s) | 252, 707, 1341, 1515 |
| StuI | AGGCCT | 1 cut(s) | 1489 |
| StyD4I | CCNGG | 1 cut(s) | 1860 |
| StyI | CCWWGG | 2 cut(s) | 1514, 1573 |
| TaaI | ACNGT | 5 cut(s) | 92, 1303, 1412, 1801, 1985 |
| TaqI | TCGA | 4 cut(s) | 148, 657, 896, 955 |
| TasI | AATT | 7 cut(s) | 305, 413, 927, 1160, 1186, 1730, 1785 |
| TatI | WGTACW | 4 cut(s) | 850, 1241, 1388, 1726 |
| TauI | GCSGC | 2 cut(s) | 1367, 1877 |
| TfiI | GAWTC | 1 cut(s) | 952 |
| Tru1I | TTAA | 4 cut(s) | 125, 1193, 1359, 1695 |
| Tru9I | TTAA | 4 cut(s) | 125, 1193, 1359, 1695 |
| TscAI | CASTG | 1 cut(s) | 12 |
| TseFI | GTSAC | 2 cut(s) | 1247, 1443 |
| Tsp45I | GTSAC | 2 cut(s) | 1247, 1443 |
| TspGWI | ACGGA | 5 cut(s) | 963, 1208, 1220, 1341, 1679 |
| TspRI | CASTG | 1 cut(s) | 12 |
| Vha464I | CTTAAG | 1 cut(s) | 124 |
| VpaK11BI | GGWCC | 4 cut(s) | 748, 971, 1502, 1889 |
| XapI | RAATTY | 2 cut(s) | 1160, 1186 |
| XceI | RCATGY | 3 cut(s) | 831, 1175, 1945 |
| XmaJI | CCTAGG | 1 cut(s) | 1514 |
| XmiI | GTMKAC | 2 cut(s) | 907, 1564 |
| XspI | CTAG | 4 cut(s) | 252, 707, 1341, 1515 |
| ZrmI | AGTACT | 2 cut(s) | 1243, 1390 |
| Zsp2I | ATGCAT | 2 cut(s) | 726, 829 |