MD02G1107300.v1.1

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000688
Physical Location & Seq
Reverse (-)
8659675 .. 8660381
707 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1107300.v1.1.491

Sequence Viewer

Length: 540 bp
ATGCTGCTCAGGAATCACCTCTCGCCATTTGGAATCGTCTCAACAATTTCACATGAAGCTGAAGCAGCTGACAGCTGGCGTGGCGGCTCTGCTGCTGCTTTTTCTCTTGCCGGCGGCAGCTTTCACCGACGCCCAGCAACTCCAAACCTCTCACAACGTGTTCGGCCCTCTTCGACCGAATCGTATTACAGCAAGTTCGCAGTGCTCCAGCCTGCGACGATCAGCAACGATGCGCTCCAGATCACGCCGGACTCCGCCGGAAACTTCACCCTCAAAAACCGCTCAGGTAGAGTCTTCTACAACCGCCCTTTCACGCTCTGGGAAGATTCAGGTTCAAATTCTTCCGATCCCGCGGCAAACGGAAGCCACGTGGCGTCTTTCAATTCGTCGTTCCTGTTTAACGTCTTTCGTCCCAACAGCTCCGCCATCCCGGGCGAGGGCCTGGCGTTCCTCATCGCGCCGGATATGATCCTCCCGGTGGGCCAGTCACGGCCAATACCTCGGTTTGACCAACGCCACCACCGACGGCGATCCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

180

Amino Acids

19.56

Weight (kDa)

10.72

Isoelectric Point (pI)

65.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 66 - 159 3.6e-14 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000688)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09820 FvH4_2g17160 FvH4_2g17160
malus_domestica MD02G1107100.v1.1 MD02G1107300.v1.1 MD05G1144900.v1.1 MD10G1144700.v1.1 MD15G1226500.v1.1
prunus_persica Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.8G183000_v2.0.a1
pyrus_communis pycom05g14000 pycom10g12440 pycom15g20140
rosa_chinensis RchiOBHm_Chr2g0096621 RchiOBHm_Chr6g0281601 RchiOBHm_Chr6g0281651 RchiOBHm_Chr7g0212121
rosa_laevigata RLG00000002926 RLG00000002927 RLG00000002933 RLG00000008638 RLG00000012954 RLG00000012955 RLG00000016656
rosa_multiflora Rmu_co8091766.1_g000001 Rmu_co8287847.1_g000001 Rmu_co8297221.1_g000001 Rmu_co8485327.1_g000001 Rmu_co8512767.1_g000001 Rmu_sc0002316.1_g000041 Rmu_sc0003565.1_g000009 Rmu_sc0014556.1_g000004 Rmu_sc0027573.1_g000001 Rmu_sc0030028.1_g000001
rosa_roxburghii Rroxscaffold_1G00026540 Rroxscaffold_2G00145470 Rroxscaffold_3G00247100 Rroxscaffold_3G00247110 Rroxscaffold_3G00247120 Rroxscaffold_5G00362680 Rroxscaffold_5G00362710 Rroxscaffold_7G00186950
rosa_rugosa Rorug02G0059000 Rorug02G0059100 Rorug06G0142300 Rorug07G0131000 Rorug07G0131100
rosa_samantha Rh1DG155700 Rh2AG106500 Rh2AG171500 Rh2BG108800 Rh2BG178900 Rh2CG110600 Rh2CG176400 Rh2DG110100 Rh2DG177600 Rh4BG120600 Rh6BG258300 Rh6CG257100 Rh6DG249200 Rh6DG249300 Rh7AG264100 Rh7AG264200 Rh7BG257800 Rh7BG257900 Rh7BG258000 Rh7BG258100 Rh7CG280600 Rh7CG280700 Rh7DG270600
rosa_wichuraiana Rw2G008240 Rw6G022110 Rw7G022540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 282
AccII CGCG 2 cut(s) 353, 458
AciI CCGC 8 cut(s) 84, 114, 255, 280, 304, 351, 353, 423
AclWI GGATC 3 cut(s) 341, 463, 525
AcoI YGGCCR 1 cut(s) 491
AcsI RAATTY 1 cut(s) 337
AcuI CTGAAG 1 cut(s) 81
AcvI CACGTG 1 cut(s) 370
AcyI GRCGYC 2 cut(s) 130, 374
AdeI CACNNNGTG 1 cut(s) 158
AfiI CCNNNNNNNGG 3 cut(s) 436, 437, 478
AflIII ACRYGT 1 cut(s) 157
AgsI TTSAA 2 cut(s) 336, 382
AjnI CCWGG 1 cut(s) 441
AluBI AGCT 5 cut(s) 59, 68, 75, 120, 420
AluI AGCT 5 cut(s) 59, 68, 75, 120, 420
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 1 cut(s) 43
AlwI GGATC 3 cut(s) 341, 463, 525
Ama87I CYCGRG 1 cut(s) 430
AoxI GGCC 4 cut(s) 164, 439, 481, 491
ApeKI GCWGC 5 cut(s) 4, 65, 92, 95, 117
ApoI RAATTY 1 cut(s) 337
AspLEI GCGC 2 cut(s) 235, 460
AspS9I GGNCC 3 cut(s) 165, 439, 481
AsuC2I CCSGG 3 cut(s) 431, 432, 476
AsuHPI GGTGA 3 cut(s) 8, 116, 259
AvaI CYCGRG 1 cut(s) 430
BbrPI CACGTG 1 cut(s) 370
BbsI GAAGAC 1 cut(s) 286
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 4 cut(s) 77, 79, 82, 129
BccI CCATC 1 cut(s) 434
BceAI ACGGC 1 cut(s) 506
BciT130I CCWGG 1 cut(s) 443
BcnI CCSGG 3 cut(s) 431, 432, 476
BcoDI GTCTC 1 cut(s) 43
BisI GCNGC 8 cut(s) 5, 66, 85, 93, 96, 115, 118, 354
BlsI GCNGC 8 cut(s) 6, 67, 86, 94, 97, 116, 119, 355
Bme1390I CCNGG 4 cut(s) 431, 432, 443, 476
BmeT110I CYCGRG 1 cut(s) 430
BmgT120I GGNCC 3 cut(s) 165, 439, 481
BmrFI CCNGG 4 cut(s) 431, 432, 443, 476
BmsI GCATC 1 cut(s) 220
BpiI GAAGAC 1 cut(s) 286
BpmI CTGGAG 2 cut(s) 191, 221
Bpu10I CCTNAGC 2 cut(s) 8, 283
BpuMI CCSGG 3 cut(s) 431, 432, 476
BsaAI YACGTR 1 cut(s) 370
BsaHI GRCGYC 2 cut(s) 130, 374
BsaJI CCNNGG 3 cut(s) 351, 430, 500
Bsc4I CCNNNNNNNGG 3 cut(s) 436, 437, 478
Bse118I RCCGGY 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 484
BseBI CCWGG 1 cut(s) 443
BseDI CCNNGG 3 cut(s) 351, 430, 500
BseGI GGATG 1 cut(s) 426
BseLI CCNNNNNNNGG 3 cut(s) 436, 437, 478
BseMII CTCAG 2 cut(s) 22, 297
BseNI ACTGG 1 cut(s) 484
BseXI GCAGC 4 cut(s) 77, 79, 82, 129
BseYI CCCAGC 1 cut(s) 133
Bsh1236I CGCG 2 cut(s) 353, 458
Bsh1285I CGRYCG 1 cut(s) 177
BshFI GGCC 4 cut(s) 166, 441, 483, 493
BsiEI CGRYCG 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 207
BsiHKCI CYCGRG 1 cut(s) 430
BsiSI CCGG 6 cut(s) 111, 248, 258, 431, 461, 476
BslFI GGGAC 1 cut(s) 396
BslI CCNNNNNNNGG 3 cut(s) 436, 437, 478
BsmAI GTCTC 1 cut(s) 43
BsmBI CGTCTC 1 cut(s) 43
BsmFI GGGAC 1 cut(s) 396
BsnI GGCC 4 cut(s) 166, 441, 483, 493
BsoBI CYCGRG 1 cut(s) 430
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 5 cut(s) 219, 240, 346, 468, 530
BspACI CCGC 8 cut(s) 84, 114, 255, 280, 304, 351, 353, 423
BspANI GGCC 4 cut(s) 166, 441, 483, 493
BspCNI CTCAG 2 cut(s) 21, 296
BspFNI CGCG 2 cut(s) 353, 458
BspPI GGATC 3 cut(s) 341, 463, 525
BsrBI CCGCTC 1 cut(s) 282
BsrFI RCCGGY 1 cut(s) 110
BsrI ACTGG 1 cut(s) 484
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 3 cut(s) 351, 430, 500
BssMI GATC 5 cut(s) 219, 240, 346, 468, 530
BssNI GRCGYC 2 cut(s) 130, 374
Bst2UI CCWGG 1 cut(s) 443
Bst6I CTCTTC 1 cut(s) 175
BstACI GRCGYC 2 cut(s) 130, 374
BstBAI YACGTR 1 cut(s) 370
BstC8I GCNNGC 3 cut(s) 77, 112, 213
BstDEI CTNAG 2 cut(s) 8, 283
BstDSI CCRYGG 1 cut(s) 351
BstF5I GGATG 1 cut(s) 426
BstFNI CGCG 2 cut(s) 353, 458
BstHHI GCGC 2 cut(s) 235, 460
BstKTI GATC 5 cut(s) 222, 243, 349, 471, 533
BstMAI GTCTC 1 cut(s) 43
BstMBI GATC 5 cut(s) 219, 240, 346, 468, 530
BstMCI CGRYCG 1 cut(s) 177
BstMWI GCNNNNNNNGC 2 cut(s) 65, 81
BstNI CCWGG 1 cut(s) 443
BstSCI CCNGG 4 cut(s) 429, 430, 441, 474
BstUI CGCG 2 cut(s) 353, 458
BstV1I GCAGC 4 cut(s) 77, 79, 82, 129
BstV2I GAAGAC 1 cut(s) 286
BsuRI GGCC 4 cut(s) 166, 441, 483, 493
BtgI CCRYGG 1 cut(s) 351
BtgZI GCGATG 1 cut(s) 439
BtsCI GGATG 1 cut(s) 426
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 1 cut(s) 207
Cac8I GCNNGC 3 cut(s) 77, 112, 213
CfoI GCGC 2 cut(s) 235, 460
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 3 cut(s) 165, 439, 481
Cfr42I CCGCGG 1 cut(s) 354
Cfr9I CCCGGG 1 cut(s) 430
CseI GACGC 2 cut(s) 138, 363
CviAII CATG 1 cut(s) 53
DdeI CTNAG 2 cut(s) 8, 283
DpnI GATC 5 cut(s) 221, 242, 348, 470, 532
DpnII GATC 5 cut(s) 219, 240, 346, 468, 530
DraIII CACNNNGTG 1 cut(s) 158
EaeI YGGCCR 1 cut(s) 491
Eam1104I CTCTTC 1 cut(s) 175
EarI CTCTTC 1 cut(s) 175
EciI GGCGGA 2 cut(s) 244, 412
Eco57I CTGAAG 1 cut(s) 81
Eco72I CACGTG 1 cut(s) 370
Eco88I CYCGRG 1 cut(s) 430
EcoO109I RGGNCCY 1 cut(s) 439
EcoRII CCWGG 1 cut(s) 441
Esp3I CGTCTC 1 cut(s) 43
FaeI CATG 1 cut(s) 56
FaiI YATR 2 cut(s) 54, 467
FaqI GGGAC 1 cut(s) 396
FatI CATG 1 cut(s) 52
FauI CCCGC 1 cut(s) 358
Fnu4HI GCNGC 8 cut(s) 5, 66, 85, 93, 96, 115, 118, 354
FokI GGATG 1 cut(s) 413
Fsp4HI GCNGC 8 cut(s) 5, 66, 85, 93, 96, 115, 118, 354
GlaI GCGC 2 cut(s) 234, 459
GluI GCNGC 8 cut(s) 5, 66, 85, 93, 96, 115, 118, 354
GsaI CCCAGC 1 cut(s) 137
GsuI CTGGAG 2 cut(s) 191, 221
HaeIII GGCC 4 cut(s) 166, 441, 483, 493
HapII CCGG 6 cut(s) 111, 248, 258, 431, 461, 476
HgaI GACGC 2 cut(s) 138, 363
HhaI GCGC 2 cut(s) 235, 460
Hin1I GRCGYC 2 cut(s) 130, 374
Hin1II CATG 1 cut(s) 56
Hin6I GCGC 2 cut(s) 233, 458
HinP1I GCGC 2 cut(s) 233, 458
HinfI GANTC 6 cut(s) 13, 33, 179, 251, 291, 326
HpaII CCGG 6 cut(s) 111, 248, 258, 431, 461, 476
HphI GGTGA 3 cut(s) 8, 116, 259
Hpy188I TCNGA 1 cut(s) 346
Hpy188III TCNNGA 2 cut(s) 10, 238
Hpy99I CGWCG 4 cut(s) 132, 220, 391, 528
HpyCH4IV ACGT 3 cut(s) 157, 369, 402
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 81
HpyF3I CTNAG 2 cut(s) 8, 283
HpySE526I ACGT 3 cut(s) 157, 369, 402
Hsp92I GRCGYC 2 cut(s) 130, 374
Hsp92II CATG 1 cut(s) 56
HspAI GCGC 2 cut(s) 233, 458
KroI GCCGGC 1 cut(s) 110
KroNI GCCGGC 1 cut(s) 112
KspI CCGCGG 1 cut(s) 354
Kzo9I GATC 5 cut(s) 219, 240, 346, 468, 530
LmnI GCTCC 3 cut(s) 210, 240, 425
Lsp1109I GCAGC 4 cut(s) 77, 79, 82, 129
LweI GCATC 1 cut(s) 220
MaeII ACGT 3 cut(s) 157, 369, 402
MaeIII GTNAC 1 cut(s) 486
MalI GATC 5 cut(s) 221, 242, 348, 470, 532
MbiI CCGCTC 1 cut(s) 282
MboI GATC 5 cut(s) 219, 240, 346, 468, 530
MboII GAAGA 4 cut(s) 162, 286, 333, 335
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 3 cut(s) 45, 337, 382
MlyI GAGTC 2 cut(s) 245, 300
MnlI CCTC 8 cut(s) 29, 158, 178, 281, 430, 461, 482, 510
MroNI GCCGGC 1 cut(s) 110
MseI TTAA 1 cut(s) 399
MspA1I CMGCKG 3 cut(s) 68, 75, 353
MspI CCGG 6 cut(s) 111, 248, 258, 431, 461, 476
MspR9I CCNGG 4 cut(s) 431, 432, 443, 476
MvaI CCWGG 1 cut(s) 443
MvnI CGCG 2 cut(s) 353, 458
MwoI GCNNNNNNNGC 2 cut(s) 65, 81
NaeI GCCGGC 1 cut(s) 112
NciI CCSGG 3 cut(s) 431, 432, 476
NdeII GATC 5 cut(s) 219, 240, 346, 468, 530
NgoMIV GCCGGC 1 cut(s) 110
NlaIII CATG 1 cut(s) 56
NmuCI GTSAC 1 cut(s) 486
PcsI WCGNNNNNNNCGW 3 cut(s) 179, 366, 520
PdiI GCCGGC 1 cut(s) 112
PfeI GAWTC 4 cut(s) 13, 33, 179, 326
PkrI GCNGC 8 cut(s) 6, 67, 86, 94, 97, 116, 119, 355
PleI GAGTC 2 cut(s) 245, 299
PmaCI CACGTG 1 cut(s) 370
PmlI CACGTG 1 cut(s) 370
PpsI GAGTC 2 cut(s) 245, 299
Ppu21I YACGTR 1 cut(s) 370
Psp6I CCWGG 1 cut(s) 441
PspCI CACGTG 1 cut(s) 370
PspFI CCCAGC 1 cut(s) 133
PspGI CCWGG 1 cut(s) 441
PspPI GGNCC 3 cut(s) 165, 439, 481
PvuII CAGCTG 2 cut(s) 68, 75
SacII CCGCGG 1 cut(s) 354
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 8 cut(s) 5, 66, 85, 93, 96, 115, 118, 354
Sau3AI GATC 5 cut(s) 219, 240, 346, 468, 530
Sau96I GGNCC 3 cut(s) 165, 439, 481
SchI GAGTC 2 cut(s) 245, 300
ScrFI CCNGG 4 cut(s) 431, 432, 443, 476
SduI GDGCHC 1 cut(s) 207
SfaNI GCATC 1 cut(s) 220
Sfr303I CCGCGG 1 cut(s) 354
SgrBI CCGCGG 1 cut(s) 354
SmaI CCCGGG 1 cut(s) 432
Sse9I AATT 3 cut(s) 45, 337, 382
SsiI CCGC 8 cut(s) 84, 114, 255, 280, 304, 351, 353, 423
StyD4I CCNGG 4 cut(s) 429, 430, 441, 474
TaiI ACGT 3 cut(s) 160, 372, 405
TaqI TCGA 1 cut(s) 173
TaqII GACCGA 1 cut(s) 191
TasI AATT 3 cut(s) 45, 337, 382
TauI GCSGC 3 cut(s) 87, 117, 356
TfiI GAWTC 4 cut(s) 13, 33, 179, 326
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 1 cut(s) 207
TseFI GTSAC 1 cut(s) 486
TseI GCWGC 5 cut(s) 4, 65, 92, 95, 117
Tsp45I GTSAC 1 cut(s) 486
TspDTI ATGAA 1 cut(s) 69
TspGWI ACGGA 1 cut(s) 375
TspMI CCCGGG 1 cut(s) 430
TspRI CASTG 1 cut(s) 207
XapI RAATTY 1 cut(s) 337
XmaI CCCGGG 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.