MD10G1144700.v1.1

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000688
Physical Location & Seq
Forward (+)
23123542 .. 23123919
378 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1144700.v1.1.491

Sequence Viewer

Length: 378 bp
ATGGTTTTGCTACTATTCTCTGCAGTTTGGGTGGGATTTGGGTATGCGAACAAAAGGAAAAGAACCAGGAACGAGGAGTCCAATGTGCTCGGAACACTGAAGAAATTGCCAGGGATGCCTAGGGAGTTCAAGTACAAGGAGCTCAAGGAGGCTACCAATAACTTCCATGAGAGCATGAGACTGGGGCAAGGCGGATTCGGCATTGTTTACACAGGATCTCTGCATGATAAAGATCATGCAAATACCAACACCCCTGCAGAAACTGCTGTCAAGAAATTTTCTCGGGACAACATCAAAGGCAAAGACGATTTCATGGCTGAGCTCACAATAATTCACCGCCTTCACCACAAACAGCTTGTCCGATTAGTAGGTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

126

Amino Acids

14.27

Weight (kDa)

9.88

Isoelectric Point (pI)

24.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 55 - 124 3.5e-06 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 59 - 125 5.8e-09 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000688)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09820 FvH4_2g17160 FvH4_2g17160
malus_domestica MD02G1107100.v1.1 MD02G1107300.v1.1 MD05G1144900.v1.1 MD10G1144700.v1.1 MD15G1226500.v1.1
prunus_persica Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.8G183000_v2.0.a1
pyrus_communis pycom05g14000 pycom10g12440 pycom15g20140
rosa_chinensis RchiOBHm_Chr2g0096621 RchiOBHm_Chr6g0281601 RchiOBHm_Chr6g0281651 RchiOBHm_Chr7g0212121
rosa_laevigata RLG00000002926 RLG00000002927 RLG00000002933 RLG00000008638 RLG00000012954 RLG00000012955 RLG00000016656
rosa_multiflora Rmu_co8091766.1_g000001 Rmu_co8287847.1_g000001 Rmu_co8297221.1_g000001 Rmu_co8485327.1_g000001 Rmu_co8512767.1_g000001 Rmu_sc0002316.1_g000041 Rmu_sc0003565.1_g000009 Rmu_sc0014556.1_g000004 Rmu_sc0027573.1_g000001 Rmu_sc0030028.1_g000001
rosa_roxburghii Rroxscaffold_1G00026540 Rroxscaffold_2G00145470 Rroxscaffold_3G00247100 Rroxscaffold_3G00247110 Rroxscaffold_3G00247120 Rroxscaffold_5G00362680 Rroxscaffold_5G00362710 Rroxscaffold_7G00186950
rosa_rugosa Rorug02G0059000 Rorug02G0059100 Rorug06G0142300 Rorug07G0131000 Rorug07G0131100
rosa_samantha Rh1DG155700 Rh2AG106500 Rh2AG171500 Rh2BG108800 Rh2BG178900 Rh2CG110600 Rh2CG176400 Rh2DG110100 Rh2DG177600 Rh4BG120600 Rh6BG258300 Rh6CG257100 Rh6DG249200 Rh6DG249300 Rh7AG264100 Rh7AG264200 Rh7BG257800 Rh7BG257900 Rh7BG258000 Rh7BG258100 Rh7CG280600 Rh7CG280700 Rh7DG270600
rosa_wichuraiana Rw2G008240 Rw6G022110 Rw7G022540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 192, 337
AclWI GGATC 1 cut(s) 223
AcsI RAATTY 1 cut(s) 275
AcuI CTGAAG 1 cut(s) 119
AfaI GTAC 1 cut(s) 134
AgsI TTSAA 1 cut(s) 130
AjnI CCWGG 2 cut(s) 65, 109
AloI GAACNNNNNNTCC 2 cut(s) 62, 94
AluBI AGCT 3 cut(s) 142, 322, 355
AluI AGCT 3 cut(s) 142, 322, 355
Alw21I GWGCWC 3 cut(s) 90, 144, 324
Alw26I GTCTC 1 cut(s) 172
AlwI GGATC 1 cut(s) 223
AlwNI CAGNNNCTG 1 cut(s) 263
Ama87I CYCGRG 1 cut(s) 282
ApoI RAATTY 1 cut(s) 275
ArsI GACNNNNNNTTYG 2 cut(s) 342, 374
AspA2I CCTAGG 1 cut(s) 119
AsuHPI GGTGA 2 cut(s) 326, 335
AvaI CYCGRG 1 cut(s) 282
AvrII CCTAGG 1 cut(s) 119
BanII GRGCYC 2 cut(s) 144, 324
Bbv12I GWGCWC 3 cut(s) 90, 144, 324
BciT130I CCWGG 2 cut(s) 67, 111
BcoDI GTCTC 1 cut(s) 172
BfaI CTAG 1 cut(s) 120
BfmI CTRYAG 2 cut(s) 21, 255
BlnI CCTAGG 1 cut(s) 119
BlpI GCTNAGC 1 cut(s) 318
Bme1390I CCNGG 2 cut(s) 67, 111
BmeT110I CYCGRG 1 cut(s) 282
BmrFI CCNGG 2 cut(s) 67, 111
BmrI ACTGGG 1 cut(s) 191
BmsI GCATC 1 cut(s) 105
BmuI ACTGGG 1 cut(s) 191
Bpu1102I GCTNAGC 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 128
BsaBI GATNNNNATC 1 cut(s) 231
BsaJI CCNNGG 2 cut(s) 110, 119
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bse1I ACTGG 1 cut(s) 186
Bse8I GATNNNNATC 1 cut(s) 231
BseBI CCWGG 2 cut(s) 67, 111
BseDI CCNNGG 2 cut(s) 110, 119
BseGI GGATG 1 cut(s) 120
BseJI GATNNNNATC 1 cut(s) 231
BseMII CTCAG 1 cut(s) 309
BseNI ACTGG 1 cut(s) 186
BseRI GAGGAG 1 cut(s) 89
BsiHKAI GWGCWC 3 cut(s) 90, 144, 324
BsiHKCI CYCGRG 1 cut(s) 282
BslFI GGGAC 1 cut(s) 299
BsmAI GTCTC 1 cut(s) 172
BsmFI GGGAC 1 cut(s) 299
BsoBI CYCGRG 1 cut(s) 282
Bsp1286I GDGCHC 3 cut(s) 90, 144, 324
Bsp143I GATC 2 cut(s) 215, 232
Bsp1720I GCTNAGC 1 cut(s) 318
BspACI CCGC 2 cut(s) 192, 337
BspCNI CTCAG 1 cut(s) 310
BspMAI CTGCAG 2 cut(s) 25, 259
BspPI GGATC 1 cut(s) 223
BsrI ACTGG 1 cut(s) 186
BssECI CCNNGG 2 cut(s) 110, 119
BssMI GATC 2 cut(s) 215, 232
BssT1I CCWWGG 1 cut(s) 119
Bst2UI CCWGG 2 cut(s) 67, 111
BstAPI GCANNNNNTGC 1 cut(s) 263
BstDEI CTNAG 1 cut(s) 318
BstF5I GGATG 1 cut(s) 120
BstKTI GATC 2 cut(s) 218, 235
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 2 cut(s) 215, 232
BstMWI GCNNNNNNNGC 3 cut(s) 115, 198, 263
BstNI CCWGG 2 cut(s) 67, 111
BstSCI CCNGG 2 cut(s) 65, 109
BstSFI CTRYAG 2 cut(s) 21, 255
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
BtsCI GGATG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 95
CaiI CAGNNNCTG 1 cut(s) 263
Csp6I GTAC 1 cut(s) 133
CviAII CATG 5 cut(s) 167, 175, 224, 236, 313
CviJI RGCY 5 cut(s) 142, 152, 317, 322, 355
CviKI_1 RGCY 5 cut(s) 142, 152, 317, 322, 355
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 1 cut(s) 318
DpnI GATC 2 cut(s) 217, 234
DpnII GATC 2 cut(s) 215, 232
EciI GGCGGA 1 cut(s) 207
Ecl136II GAGCTC 2 cut(s) 142, 322
Eco130I CCWWGG 1 cut(s) 119
Eco24I GRGCYC 2 cut(s) 144, 324
Eco53kI GAGCTC 2 cut(s) 142, 322
Eco57I CTGAAG 1 cut(s) 119
Eco88I CYCGRG 1 cut(s) 282
EcoICRI GAGCTC 2 cut(s) 142, 322
EcoRII CCWGG 2 cut(s) 65, 109
EcoT14I CCWWGG 1 cut(s) 119
EcoT38I GRGCYC 2 cut(s) 144, 324
ErhI CCWWGG 1 cut(s) 119
FaeI CATG 5 cut(s) 170, 178, 227, 239, 316
FaiI YATR 7 cut(s) 45, 168, 176, 225, 237, 314, 374
FaqI GGGAC 1 cut(s) 299
FatI CATG 5 cut(s) 166, 174, 223, 235, 312
FokI GGATG 1 cut(s) 127
FriOI GRGCYC 2 cut(s) 144, 324
FspBI CTAG 1 cut(s) 120
Hin1II CATG 5 cut(s) 170, 178, 227, 239, 316
HinfI GANTC 2 cut(s) 77, 195
HphI GGTGA 2 cut(s) 326, 335
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 2 cut(s) 92, 362
Hpy188III TCNNGA 2 cut(s) 271, 284
Hpy8I GTNNAC 1 cut(s) 208
HpyAV CCTTC 1 cut(s) 350
HpyCH4V TGCA 4 cut(s) 23, 223, 239, 257
HpyF10VI GCNNNNNNNGC 3 cut(s) 115, 198, 263
HpyF3I CTNAG 1 cut(s) 318
Hsp92II CATG 5 cut(s) 170, 178, 227, 239, 316
Kzo9I GATC 2 cut(s) 215, 232
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 7 cut(s) 52, 79, 96, 123, 167, 198, 267
LweI GCATC 1 cut(s) 105
MaeI CTAG 1 cut(s) 120
MalI GATC 2 cut(s) 217, 234
MboI GATC 2 cut(s) 215, 232
MboII GAAGA 1 cut(s) 112
MflI RGATCY 1 cut(s) 215
MhlI GDGCHC 3 cut(s) 90, 144, 324
MluCI AATT 3 cut(s) 104, 275, 330
MlyI GAGTC 1 cut(s) 86
MnlI CCTC 2 cut(s) 67, 142
MspR9I CCNGG 2 cut(s) 67, 111
MvaI CCWGG 2 cut(s) 67, 111
MwoI GCNNNNNNNGC 3 cut(s) 115, 198, 263
NdeII GATC 2 cut(s) 215, 232
NlaIII CATG 5 cut(s) 170, 178, 227, 239, 316
PfeI GAWTC 1 cut(s) 195
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
Psp124BI GAGCTC 2 cut(s) 144, 324
Psp6I CCWGG 2 cut(s) 65, 109
PspGI CCWGG 2 cut(s) 65, 109
PstI CTGCAG 2 cut(s) 25, 259
PstNI CAGNNNCTG 1 cut(s) 263
PsuI RGATCY 1 cut(s) 215
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SacI GAGCTC 2 cut(s) 144, 324
Sau3AI GATC 2 cut(s) 215, 232
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 2 cut(s) 67, 111
SduI GDGCHC 3 cut(s) 90, 144, 324
SetI ASST 4 cut(s) 144, 324, 357, 373
SfaNI GCATC 1 cut(s) 105
SfcI CTRYAG 2 cut(s) 21, 255
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 3 cut(s) 104, 275, 330
SsiI CCGC 2 cut(s) 192, 337
SspMI CTAG 1 cut(s) 120
SstI GAGCTC 2 cut(s) 144, 324
StyD4I CCNGG 2 cut(s) 65, 109
StyI CCWWGG 1 cut(s) 119
TasI AATT 3 cut(s) 104, 275, 330
TatI WGTACW 1 cut(s) 132
TfiI GAWTC 1 cut(s) 195
TscAI CASTG 1 cut(s) 102
TspDTI ATGAA 1 cut(s) 301
TspRI CASTG 1 cut(s) 102
XapI RAATTY 1 cut(s) 275
XmaJI CCTAGG 1 cut(s) 119
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.