Rh6DG249300

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000688
Physical Location & Seq
Forward (+)
43735773 .. 43736069
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG249300.1

Sequence Viewer

Length: 297 bp
ATGTTGCATCGAGAAGGGTGTATTGAGGAAGCTGTCGATGAGCGACTGAACAGTAATTACGCGTTGGATGAAGCAAAGAAGCTTTTGCTACTTGGATTGGCATGTTCACATCCTATTGCTAGTGAGCGGCCTCAAACACAAGCCATATGCCAGATTATATCCGGAACCATGTCAGTCCCTAGTGTGCCTCCATTCAAGCCTGTTTTCACATGGCCTTCCATGGGTACTGCATATAGCAGCACTGACAGTACAGTTTCTAACGTCACTCTTTCTAGGATCACAGTATCTCTTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

98

Amino Acids

10.61

Weight (kDa)

5.53

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000688)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09820 FvH4_2g17160 FvH4_2g17160
malus_domestica MD02G1107100.v1.1 MD02G1107300.v1.1 MD05G1144900.v1.1 MD10G1144700.v1.1 MD15G1226500.v1.1
prunus_persica Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.8G183000_v2.0.a1
pyrus_communis pycom05g14000 pycom10g12440 pycom15g20140
rosa_chinensis RchiOBHm_Chr2g0096621 RchiOBHm_Chr6g0281601 RchiOBHm_Chr6g0281651 RchiOBHm_Chr7g0212121
rosa_laevigata RLG00000002926 RLG00000002927 RLG00000002933 RLG00000008638 RLG00000012954 RLG00000012955 RLG00000016656
rosa_multiflora Rmu_co8091766.1_g000001 Rmu_co8287847.1_g000001 Rmu_co8297221.1_g000001 Rmu_co8485327.1_g000001 Rmu_co8512767.1_g000001 Rmu_sc0002316.1_g000041 Rmu_sc0003565.1_g000009 Rmu_sc0014556.1_g000004 Rmu_sc0027573.1_g000001 Rmu_sc0030028.1_g000001
rosa_roxburghii Rroxscaffold_1G00026540 Rroxscaffold_2G00145470 Rroxscaffold_3G00247100 Rroxscaffold_3G00247110 Rroxscaffold_3G00247120 Rroxscaffold_5G00362680 Rroxscaffold_5G00362710 Rroxscaffold_7G00186950
rosa_rugosa Rorug02G0059000 Rorug02G0059100 Rorug06G0142300 Rorug07G0131000 Rorug07G0131100
rosa_samantha Rh1DG155700 Rh2AG106500 Rh2AG171500 Rh2BG108800 Rh2BG178900 Rh2CG110600 Rh2CG176400 Rh2DG110100 Rh2DG177600 Rh4BG120600 Rh6BG258300 Rh6CG257100 Rh6DG249200 Rh6DG249300 Rh7AG264100 Rh7AG264200 Rh7BG257800 Rh7BG257900 Rh7BG258000 Rh7BG258100 Rh7CG280600 Rh7CG280700 Rh7DG270600
rosa_wichuraiana Rw2G008240 Rw6G022110 Rw7G022540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 127
AccII CGCG 1 cut(s) 62
AccIII TCCGGA 1 cut(s) 161
AciI CCGC 1 cut(s) 127
AclWI GGATC 1 cut(s) 284
AfaI GTAC 2 cut(s) 226, 250
AfiI CCNNNNNNNGG 1 cut(s) 221
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 1 cut(s) 196
AluBI AGCT 2 cut(s) 32, 82
AluI AGCT 2 cut(s) 32, 82
AlwI GGATC 1 cut(s) 284
Aor13HI TCCGGA 1 cut(s) 161
AoxI GGCC 2 cut(s) 128, 212
ApeKI GCWGC 1 cut(s) 237
BbvI GCAGC 1 cut(s) 249
BfaI CTAG 3 cut(s) 120, 180, 273
BisI GCNGC 2 cut(s) 128, 238
BlsI GCNGC 2 cut(s) 129, 239
BmiI GGNNCC 1 cut(s) 166
BmsI GCATC 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 219
BsaWI WCCGGW 1 cut(s) 161
Bsc4I CCNNNNNNNGG 1 cut(s) 221
BseAI TCCGGA 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 2 cut(s) 73, 109
BseLI CCNNNNNNNGG 1 cut(s) 221
BseXI GCAGC 1 cut(s) 249
Bsh1236I CGCG 1 cut(s) 62
BshFI GGCC 2 cut(s) 130, 214
BsiSI CCGG 1 cut(s) 162
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 221
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 2 cut(s) 130, 214
Bsp13I TCCGGA 1 cut(s) 161
Bsp143I GATC 1 cut(s) 276
Bsp19I CCATGG 1 cut(s) 219
BspACI CCGC 1 cut(s) 127
BspANI GGCC 2 cut(s) 130, 214
BspEI TCCGGA 1 cut(s) 161
BspFNI CGCG 1 cut(s) 62
BspLI GGNNCC 1 cut(s) 166
BspPI GGATC 1 cut(s) 284
BsrBI CCGCTC 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 1 cut(s) 276
BssT1I CCWWGG 1 cut(s) 219
Bst4CI ACNGT 4 cut(s) 53, 248, 253, 283
Bst6I CTCTTC 1 cut(s) 294
BstDEI CTNAG 1 cut(s) 294
BstDSI CCRYGG 1 cut(s) 219
BstF5I GGATG 2 cut(s) 73, 109
BstFNI CGCG 1 cut(s) 62
BstKTI GATC 1 cut(s) 279
BstMBI GATC 1 cut(s) 276
BstNSI RCATGY 1 cut(s) 105
BstUI CGCG 1 cut(s) 62
BstV1I GCAGC 1 cut(s) 249
BsuRI GGCC 2 cut(s) 130, 214
BtgI CCRYGG 1 cut(s) 219
BtsCI GGATG 2 cut(s) 73, 109
BtsIMutI CAGTG 1 cut(s) 240
Csp6I GTAC 2 cut(s) 225, 249
CviAII CATG 4 cut(s) 102, 169, 210, 220
CviJI RGCY 6 cut(s) 32, 82, 130, 143, 199, 214
CviKI_1 RGCY 6 cut(s) 32, 82, 130, 143, 199, 214
CviQI GTAC 2 cut(s) 225, 249
DdeI CTNAG 1 cut(s) 294
DpnI GATC 1 cut(s) 278
DpnII GATC 1 cut(s) 276
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
Eco130I CCWWGG 1 cut(s) 219
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 4 cut(s) 105, 172, 213, 223
FaiI YATR 9 cut(s) 103, 146, 148, 158, 170, 211, 221, 232, 234
FaqI GGGAC 1 cut(s) 161
FatI CATG 4 cut(s) 101, 168, 209, 219
FauNDI CATATG 1 cut(s) 146
Fnu4HI GCNGC 2 cut(s) 128, 238
FokI GGATG 2 cut(s) 80, 96
Fsp4HI GCNGC 2 cut(s) 128, 238
FspBI CTAG 3 cut(s) 120, 180, 273
GluI GCNGC 2 cut(s) 128, 238
HaeIII GGCC 2 cut(s) 130, 214
HapII CCGG 1 cut(s) 162
Hin1II CATG 4 cut(s) 105, 172, 213, 223
HindIII AAGCTT 1 cut(s) 80
HpaII CCGG 1 cut(s) 162
Hpy166II GTNNAC 1 cut(s) 107
Hpy188III TCNNGA 2 cut(s) 11, 162
Hpy8I GTNNAC 1 cut(s) 107
HpyAV CCTTC 2 cut(s) 8, 225
HpyCH4III ACNGT 4 cut(s) 53, 248, 253, 283
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 2 cut(s) 7, 230
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 4 cut(s) 105, 172, 213, 223
Kpn2I TCCGGA 1 cut(s) 161
Kzo9I GATC 1 cut(s) 276
LpnPI CCDG 3 cut(s) 164, 175, 213
Lsp1109I GCAGC 1 cut(s) 249
LweI GCATC 1 cut(s) 16
MaeI CTAG 3 cut(s) 120, 180, 273
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 1 cut(s) 262
MalI GATC 1 cut(s) 278
MbiI CCGCTC 1 cut(s) 127
MboI GATC 1 cut(s) 276
MboII GAAGA 1 cut(s) 281
MluCI AATT 1 cut(s) 55
MluI ACGCGT 1 cut(s) 60
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 3 cut(s) 19, 141, 198
MroI TCCGGA 1 cut(s) 161
MspI CCGG 1 cut(s) 162
MvnI CGCG 1 cut(s) 62
NcoI CCATGG 1 cut(s) 219
NdeI CATATG 1 cut(s) 146
NdeII GATC 1 cut(s) 276
NlaIII CATG 4 cut(s) 105, 172, 213, 223
NlaIV GGNNCC 1 cut(s) 166
NmuCI GTSAC 1 cut(s) 262
NspI RCATGY 1 cut(s) 105
PkrI GCNGC 2 cut(s) 129, 239
PspN4I GGNNCC 1 cut(s) 166
PsrI GAACNNNNNNTAC 2 cut(s) 41, 73
RsaI GTAC 2 cut(s) 226, 250
RsaNI GTAC 2 cut(s) 225, 249
SatI GCNGC 2 cut(s) 128, 238
Sau3AI GATC 1 cut(s) 276
SetI ASST 3 cut(s) 34, 84, 264
SfaNI GCATC 1 cut(s) 16
Sse9I AATT 1 cut(s) 55
SsiI CCGC 1 cut(s) 127
SspMI CTAG 3 cut(s) 120, 180, 273
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 4 cut(s) 53, 248, 253, 283
TaiI ACGT 1 cut(s) 264
TaqI TCGA 2 cut(s) 10, 36
TasI AATT 1 cut(s) 55
TatI WGTACW 1 cut(s) 248
TauI GCSGC 1 cut(s) 130
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 1 cut(s) 237
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 1 cut(s) 84
TspRI CASTG 1 cut(s) 247
XceI RCATGY 1 cut(s) 105
XspI CTAG 3 cut(s) 120, 180, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.