Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000688

Physical Location & Seq

Genomic Coordinates Reverse (-)

28454510 .. 28456688

Gene Structure 2179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG280700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGAAACGCACCCTAGAGTCTTTAACAGGACATGCCAGATTCATTCAAGAGATACGGGAGTTTAATGATGAACTGAGTCTCCCCAACCATGACATAGCTGATCTTGAAACACAAATGATCGAAGGTGCACAACTCGTTGGCAGGATGTCCAGTTTTCGTATGTACAACTATTGCTGCATGGATGGTTGTGACGACCAACTTTATGAATTGAATAGGTCTCTTGATAGACTTTTAGACAACTTGCAGCTGCAGCAAGCAAGGGATGTGAAGGAGATCTTGAAATTGTCTAGGCATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

99

Amino Acids

11.66

Weight (kDa)

5.07

Isoelectric Point (pI)

52.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	1 - 94	3.9e-11	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09820 FvH4_2g17160 FvH4_2g17160
malus_domestica	MD02G1107100.v1.1 MD02G1107300.v1.1 MD05G1144900.v1.1 MD10G1144700.v1.1 MD15G1226500.v1.1
prunus_persica	Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.8G183000_v2.0.a1
pyrus_communis	pycom05g14000 pycom10g12440 pycom15g20140
rosa_chinensis	RchiOBHm_Chr2g0096621 RchiOBHm_Chr6g0281601 RchiOBHm_Chr6g0281651 RchiOBHm_Chr7g0212121
rosa_laevigata	RLG00000002926 RLG00000002927 RLG00000002933 RLG00000008638 RLG00000012954 RLG00000012955 RLG00000016656
rosa_multiflora	Rmu_co8091766.1_g000001 Rmu_co8287847.1_g000001 Rmu_co8297221.1_g000001 Rmu_co8485327.1_g000001 Rmu_co8512767.1_g000001 Rmu_sc0002316.1_g000041 Rmu_sc0003565.1_g000009 Rmu_sc0014556.1_g000004 Rmu_sc0027573.1_g000001 Rmu_sc0030028.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026540 Rroxscaffold_2G00145470 Rroxscaffold_3G00247100 Rroxscaffold_3G00247110 Rroxscaffold_3G00247120 Rroxscaffold_5G00362680 Rroxscaffold_5G00362710 Rroxscaffold_7G00186950
rosa_rugosa	Rorug02G0059000 Rorug02G0059100 Rorug06G0142300 Rorug07G0131000 Rorug07G0131100
rosa_samantha	Rh1DG155700 Rh2AG106500 Rh2AG171500 Rh2BG108800 Rh2BG178900 Rh2CG110600 Rh2CG176400 Rh2DG110100 Rh2DG177600 Rh4BG120600 Rh6BG258300 Rh6CG257100 Rh6DG249200 Rh6DG249300 Rh7AG264100 Rh7AG264200 Rh7BG257800 Rh7BG257900 Rh7BG258000 Rh7BG258100 Rh7CG280600 Rh7CG280700 Rh7DG270600
rosa_wichuraiana	Rw2G008240 Rw6G022110 Rw7G022540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	164
AgsI	TTSAA	4 cut(s)	47, 107, 211, 280
AloI	GAACNNNNNNTCC	2 cut(s)	63, 95
AluBI	AGCT	2 cut(s)	98, 247
AluI	AGCT	2 cut(s)	98, 247
Alw21I	GWGCWC	1 cut(s)	130
Alw26I	GTCTC	2 cut(s)	83, 222
Alw44I	GTGCAC	1 cut(s)	126
ApaLI	GTGCAC	1 cut(s)	126
ApeKI	GCWGC	4 cut(s)	174, 244, 247, 250
BaeGI	GKGCMC	1 cut(s)	130
BaeI	ACNNNNGTAYC	2 cut(s)	44, 77
Bbv12I	GWGCWC	1 cut(s)	130
BbvI	GCAGC	4 cut(s)	161, 234, 256, 262
BccI	CCATC	1 cut(s)	176
BcoDI	GTCTC	2 cut(s)	83, 222
BfaI	CTAG	2 cut(s)	14, 288
BfmI	CTRYAG	1 cut(s)	248
BglII	AGATCT	1 cut(s)	273
BisI	GCNGC	4 cut(s)	175, 245, 248, 251
BlsI	GCNGC	4 cut(s)	176, 246, 249, 252
BsaI	GGTCTC	1 cut(s)	222
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bse1I	ACTGG	1 cut(s)	150
BseGI	GGATG	3 cut(s)	150, 187, 268
BseMII	CTCAG	1 cut(s)	65
BseNI	ACTGG	1 cut(s)	150
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	4 cut(s)	161, 234, 256, 262
BsiHKAI	GWGCWC	1 cut(s)	130
BsmAI	GTCTC	2 cut(s)	83, 222
Bso31I	GGTCTC	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp1407I	TGTACA	1 cut(s)	162
Bsp143I	GATC	3 cut(s)	100, 117, 273
BspCNI	CTCAG	1 cut(s)	66
BspMAI	CTGCAG	1 cut(s)	252
BspTNI	GGTCTC	1 cut(s)	222
BsrGI	TGTACA	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	150
BssMI	GATC	3 cut(s)	100, 117, 273
BstAUI	TGTACA	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	1 cut(s)	74
BstF5I	GGATG	3 cut(s)	150, 187, 268
BstKTI	GATC	3 cut(s)	103, 120, 276
BstMAI	GTCTC	2 cut(s)	83, 222
BstMBI	GATC	3 cut(s)	100, 117, 273
BstMWI	GCNNNNNNNGC	1 cut(s)	250
BstNSI	RCATGY	1 cut(s)	35
BstSFI	CTRYAG	1 cut(s)	248
BstSLI	GKGCMC	1 cut(s)	130
BstV1I	GCAGC	4 cut(s)	161, 234, 256, 262
BstX2I	RGATCY	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	273
BtsCI	GGATG	3 cut(s)	150, 187, 268
Cac8I	GCNNGC	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	3 cut(s)	32, 89, 178
CviJI	RGCY	2 cut(s)	98, 247
CviKI_1	RGCY	2 cut(s)	98, 247
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	3 cut(s)	102, 119, 275
DpnII	GATC	3 cut(s)	100, 117, 273
Eco31I	GGTCTC	1 cut(s)	222
FaeI	CATG	3 cut(s)	35, 92, 181
FaiI	YATR	6 cut(s)	33, 90, 95, 161, 179, 204
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FatI	CATG	3 cut(s)	31, 88, 177
Fnu4HI	GCNGC	4 cut(s)	175, 245, 248, 251
FokI	GGATG	3 cut(s)	157, 194, 275
Fsp4HI	GCNGC	4 cut(s)	175, 245, 248, 251
FspBI	CTAG	2 cut(s)	14, 288
GluI	GCNGC	4 cut(s)	175, 245, 248, 251
Hin1II	CATG	3 cut(s)	35, 92, 181
HinfI	GANTC	3 cut(s)	17, 39, 76
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188III	TCNNGA	4 cut(s)	47, 104, 221, 277
Hpy8I	GTNNAC	1 cut(s)	128
HpyAV	CCTTC	2 cut(s)	116, 262
HpyCH4V	TGCA	4 cut(s)	128, 177, 244, 250
HpyF10VI	GCNNNNNNNGC	1 cut(s)	250
HpyF3I	CTNAG	1 cut(s)	74
Hsp92II	CATG	3 cut(s)	35, 92, 181
Kzo9I	GATC	3 cut(s)	100, 117, 273
LpnPI	CCDG	4 cut(s)	12, 49, 127, 163
Lsp1109I	GCAGC	4 cut(s)	161, 234, 256, 262
MaeI	CTAG	2 cut(s)	14, 288
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	3 cut(s)	102, 119, 275
MboI	GATC	3 cut(s)	100, 117, 273
MflI	RGATCY	1 cut(s)	273
MhlI	GDGCHC	1 cut(s)	130
MluCI	AATT	2 cut(s)	206, 281
MlyI	GAGTC	2 cut(s)	26, 85
MseI	TTAA	2 cut(s)	23, 63
MspA1I	CMGCKG	1 cut(s)	247
MwoI	GCNNNNNNNGC	1 cut(s)	250
NdeII	GATC	3 cut(s)	100, 117, 273
NlaIII	CATG	3 cut(s)	35, 92, 181
NmuCI	GTSAC	1 cut(s)	188
NspI	RCATGY	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	39
PkrI	GCNGC	4 cut(s)	176, 246, 249, 252
PleI	GAGTC	2 cut(s)	25, 84
PpsI	GAGTC	2 cut(s)	25, 84
PstI	CTGCAG	1 cut(s)	252
PsuI	RGATCY	1 cut(s)	273
PvuII	CAGCTG	1 cut(s)	247
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SaqAI	TTAA	2 cut(s)	23, 63
SatI	GCNGC	4 cut(s)	175, 245, 248, 251
Sau3AI	GATC	3 cut(s)	100, 117, 273
SchI	GAGTC	2 cut(s)	26, 85
SduI	GDGCHC	1 cut(s)	130
SetI	ASST	4 cut(s)	100, 127, 218, 249
SfcI	CTRYAG	1 cut(s)	248
Sse9I	AATT	2 cut(s)	206, 281
SspMI	CTAG	2 cut(s)	14, 288
TaqI	TCGA	1 cut(s)	120
TasI	AATT	2 cut(s)	206, 281
TatI	WGTACW	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	2 cut(s)	23, 63
Tru9I	TTAA	2 cut(s)	23, 63
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	4 cut(s)	174, 244, 247, 250
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	4 cut(s)	17, 31, 84, 219
VneI	GTGCAC	1 cut(s)	126
XceI	RCATGY	1 cut(s)	35
XspI	CTAG	2 cut(s)	14, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.