Rh1DG155700
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
32404335 .. 32406840
2506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG155700.1

Sequence Viewer

Length: 555 bp
ATGTGCCTCGTTATGAAGTTGCTTCAGACCCAACCGGAAAAGGAAATGGTCATCGAGTTCATTAAGAACGACGACTGCAACAGCAGCAGCAGAAGAATTGAAGACAAAGAAGGTTTTTGTCCGGCATCTAGAGATTGTAACGTAAACTTCACCAAGAGTGCCGGAACATCGAACGCCAAATTTGAACTTTGGGAGGCCAGATTCATTCGAGAGATACGGGAGTTTGATGATGAACTGAGTCTCCCCAACCATGACATAGCTGATCTTGAAACACAAATGATTGAAGGCACACAGCTCGTTGGGAGGATGTCCAGTTTTCGTATGCAAAACCTTGACGACCTTGATGAAATGAAGGGTCTGTTGAAGATGATACTGCAGCAGATCAATGATCCTGAAATGAAGGGTCTAGTGAAGAAGTTACTGGAGCATAATGCAGGGAACTTCACGGAGACCTCGACCTCGGCTTCTGGAAGTAATACAGAAAGAGAAGGGAATGATGAAGCACAAGGTGAATCTCTTGGAAATTTCATTCTTAAATTCTATATTTGCGATTAG

Protein Analysis

184

Amino Acids

20.95

Weight (kDa)

4.64

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000688)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 383
AcsI RAATTY 3 cut(s) 179, 523, 536
AcuI CTGAAG 1 cut(s) 8
AdeI CACNNNGTG 1 cut(s) 509
AgsI TTSAA 5 cut(s) 101, 185, 269, 284, 364
AloI GAACNNNNNNTCC 2 cut(s) 225, 257
AluBI AGCT 2 cut(s) 260, 295
AluI AGCT 2 cut(s) 260, 295
Alw26I GTCTC 2 cut(s) 245, 443
AlwI GGATC 1 cut(s) 383
AoxI GGCC 1 cut(s) 195
ApeKI GCWGC 3 cut(s) 84, 87, 376
ApoI RAATTY 3 cut(s) 179, 523, 536
AsuHPI GGTGA 2 cut(s) 142, 521
BaeI ACNNNNGTAYC 2 cut(s) 206, 239
BbsI GAAGAC 1 cut(s) 108
BbvI GCAGC 3 cut(s) 96, 99, 388
BcgI CGANNNNNNTGC 2 cut(s) 277, 311
BcoDI GTCTC 2 cut(s) 245, 443
BfaI CTAG 2 cut(s) 129, 407
BfmI CTRYAG 1 cut(s) 374
BisI GCNGC 3 cut(s) 85, 88, 377
BlsI GCNGC 3 cut(s) 86, 89, 378
BmsI GCATC 1 cut(s) 134
BpiI GAAGAC 1 cut(s) 108
BpmI CTGGAG 1 cut(s) 443
BsaI GGTCTC 1 cut(s) 443
BsaJI CCNNGG 1 cut(s) 459
BsaWI WCCGGW 1 cut(s) 34
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bse1I ACTGG 2 cut(s) 312, 426
BseDI CCNNGG 1 cut(s) 459
BseGI GGATG 1 cut(s) 312
BseMII CTCAG 1 cut(s) 227
BseNI ACTGG 2 cut(s) 312, 426
BseXI GCAGC 3 cut(s) 96, 99, 388
BshFI GGCC 1 cut(s) 197
BsiSI CCGG 3 cut(s) 35, 122, 162
BsmAI GTCTC 2 cut(s) 245, 443
BsnI GGCC 1 cut(s) 197
Bso31I GGTCTC 1 cut(s) 443
Bsp143I GATC 3 cut(s) 262, 381, 388
BspANI GGCC 1 cut(s) 197
BspCNI CTCAG 1 cut(s) 228
BspMAI CTGCAG 1 cut(s) 378
BspPI GGATC 1 cut(s) 383
BspTNI GGTCTC 1 cut(s) 443
BsrI ACTGG 2 cut(s) 312, 426
BssECI CCNNGG 1 cut(s) 459
BssMI GATC 3 cut(s) 262, 381, 388
BstDEI CTNAG 1 cut(s) 236
BstF5I GGATG 1 cut(s) 312
BstKTI GATC 3 cut(s) 265, 384, 391
BstMAI GTCTC 2 cut(s) 245, 443
BstMBI GATC 3 cut(s) 262, 381, 388
BstMWI GCNNNNNNNGC 1 cut(s) 84
BstSFI CTRYAG 1 cut(s) 374
BstV1I GCAGC 3 cut(s) 96, 99, 388
BstV2I GAAGAC 1 cut(s) 108
BsuRI GGCC 1 cut(s) 197
BtsCI GGATG 1 cut(s) 312
CviAII CATG 1 cut(s) 251
CviJI RGCY 4 cut(s) 197, 260, 295, 464
CviKI_1 RGCY 4 cut(s) 197, 260, 295, 464
DdeI CTNAG 1 cut(s) 236
DpnI GATC 3 cut(s) 264, 383, 390
DpnII GATC 3 cut(s) 262, 381, 388
DraIII CACNNNGTG 1 cut(s) 509
Eco31I GGTCTC 1 cut(s) 443
Eco57I CTGAAG 1 cut(s) 8
FaeI CATG 1 cut(s) 254
FaiI YATR 6 cut(s) 14, 252, 257, 323, 429, 543
FatI CATG 1 cut(s) 250
Fnu4HI GCNGC 3 cut(s) 85, 88, 377
FokI GGATG 1 cut(s) 319
Fsp4HI GCNGC 3 cut(s) 85, 88, 377
FspBI CTAG 2 cut(s) 129, 407
GluI GCNGC 3 cut(s) 85, 88, 377
GsuI CTGGAG 1 cut(s) 443
HaeIII GGCC 1 cut(s) 197
HapII CCGG 3 cut(s) 35, 122, 162
Hin1II CATG 1 cut(s) 254
HinfI GANTC 3 cut(s) 201, 238, 512
HpaII CCGG 3 cut(s) 35, 122, 162
HphI GGTGA 2 cut(s) 142, 521
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 5 cut(s) 129, 209, 266, 392, 468
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 5 cut(s) 104, 278, 346, 394, 482
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 4 cut(s) 78, 325, 376, 434
HpyF10VI GCNNNNNNNGC 1 cut(s) 84
HpyF3I CTNAG 1 cut(s) 236
HpySE526I ACGT 1 cut(s) 141
Hsp92II CATG 1 cut(s) 254
Kzo9I GATC 3 cut(s) 262, 381, 388
LmnI GCTCC 1 cut(s) 424
LpnPI CCDG 9 cut(s) 48, 135, 175, 211, 325, 405, 407, 420, 453
Lsp1109I GCAGC 3 cut(s) 96, 99, 388
LweI GCATC 1 cut(s) 134
MaeI CTAG 2 cut(s) 129, 407
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 2 cut(s) 137, 417
MalI GATC 3 cut(s) 264, 383, 390
MboI GATC 3 cut(s) 262, 381, 388
MboII GAAGA 4 cut(s) 105, 113, 376, 424
MluCI AATT 4 cut(s) 96, 179, 523, 536
MlyI GAGTC 1 cut(s) 247
MnlI CCTC 5 cut(s) 17, 187, 297, 463, 469
MseI TTAA 2 cut(s) 63, 534
MspI CCGG 3 cut(s) 35, 122, 162
MwoI GCNNNNNNNGC 1 cut(s) 84
NdeII GATC 3 cut(s) 262, 381, 388
NlaIII CATG 1 cut(s) 254
NmeAIII GCCGAG 1 cut(s) 440
PcsI WCGNNNNNNNCGW 1 cut(s) 452
PfeI GAWTC 2 cut(s) 201, 512
PkrI GCNGC 3 cut(s) 86, 89, 378
PleI GAGTC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 246
PstI CTGCAG 1 cut(s) 378
SaqAI TTAA 2 cut(s) 63, 534
SatI GCNGC 3 cut(s) 85, 88, 377
Sau3AI GATC 3 cut(s) 262, 381, 388
SchI GAGTC 1 cut(s) 247
SetI ASST 9 cut(s) 115, 144, 262, 297, 333, 342, 455, 461, 511
SfaNI GCATC 1 cut(s) 134
SfcI CTRYAG 1 cut(s) 374
Sse9I AATT 4 cut(s) 96, 179, 523, 536
SspMI CTAG 2 cut(s) 129, 407
TaiI ACGT 1 cut(s) 144
TaqI TCGA 4 cut(s) 54, 170, 208, 455
TasI AATT 4 cut(s) 96, 179, 523, 536
TfiI GAWTC 2 cut(s) 201, 512
Tru1I TTAA 2 cut(s) 63, 534
Tru9I TTAA 2 cut(s) 63, 534
TseI GCWGC 3 cut(s) 84, 87, 376
TspDTI ATGAA 9 cut(s) 29, 49, 193, 246, 360, 365, 413, 513, 517
TspGWI ACGGA 1 cut(s) 461
XapI RAATTY 3 cut(s) 179, 523, 536
XbaI TCTAGA 1 cut(s) 128
XspI CTAG 2 cut(s) 129, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.