Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000688

Physical Location & Seq

Genomic Coordinates Forward (+)

40419636 .. 40426824

Gene Structure 7189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00247100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGAAAGGAAATCAGAGTTCAGATACCTCCCCACACATATGAAACGCACCCTAGAGTCTTTAACAGGACAGGCCAGATTCATTCAAGAGATACGGGAGTTTAATGATGAACTGAGTCTCCCGAACCATGACATAGCTGATCTTGAAACACAAATGATCGAAGGTGCACAACTCGTTGGCAGGATGTCCAGTTTTCAGAAACTCAATTTGATAACTACAACATTTACAGCTGCAGCTCTACATTGTGGCTTTGATGATGATAATTGTCATGCTTGTTTCCCTTTGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

96

Amino Acids

10.98

Weight (kDa)

5.21

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09820 FvH4_2g17160 FvH4_2g17160
malus_domestica	MD02G1107100.v1.1 MD02G1107300.v1.1 MD05G1144900.v1.1 MD10G1144700.v1.1 MD15G1226500.v1.1
prunus_persica	Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.8G183000_v2.0.a1
pyrus_communis	pycom05g14000 pycom10g12440 pycom15g20140
rosa_chinensis	RchiOBHm_Chr2g0096621 RchiOBHm_Chr6g0281601 RchiOBHm_Chr6g0281651 RchiOBHm_Chr7g0212121
rosa_laevigata	RLG00000002926 RLG00000002927 RLG00000002933 RLG00000008638 RLG00000012954 RLG00000012955 RLG00000016656
rosa_multiflora	Rmu_co8091766.1_g000001 Rmu_co8287847.1_g000001 Rmu_co8297221.1_g000001 Rmu_co8485327.1_g000001 Rmu_co8512767.1_g000001 Rmu_sc0002316.1_g000041 Rmu_sc0003565.1_g000009 Rmu_sc0014556.1_g000004 Rmu_sc0027573.1_g000001 Rmu_sc0030028.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026540 Rroxscaffold_2G00145470 Rroxscaffold_3G00247100 Rroxscaffold_3G00247110 Rroxscaffold_3G00247120 Rroxscaffold_5G00362680 Rroxscaffold_5G00362710 Rroxscaffold_7G00186950
rosa_rugosa	Rorug02G0059000 Rorug02G0059100 Rorug06G0142300 Rorug07G0131000 Rorug07G0131100
rosa_samantha	Rh1DG155700 Rh2AG106500 Rh2AG171500 Rh2BG108800 Rh2BG178900 Rh2CG110600 Rh2CG176400 Rh2DG110100 Rh2DG177600 Rh4BG120600 Rh6BG258300 Rh6CG257100 Rh6DG249200 Rh6DG249300 Rh7AG264100 Rh7AG264200 Rh7BG257800 Rh7BG257900 Rh7BG258000 Rh7BG258100 Rh7CG280600 Rh7CG280700 Rh7DG270600
rosa_wichuraiana	Rw2G008240 Rw6G022110 Rw7G022540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	86, 146
AloI	GAACNNNNNNTCC	2 cut(s)	102, 134
AluBI	AGCT	3 cut(s)	137, 230, 236
AluI	AGCT	3 cut(s)	137, 230, 236
Alw21I	GWGCWC	1 cut(s)	169
Alw26I	GTCTC	1 cut(s)	122
Alw44I	GTGCAC	1 cut(s)	165
AoxI	GGCC	1 cut(s)	72
ApaLI	GTGCAC	1 cut(s)	165
ApeKI	GCWGC	2 cut(s)	230, 233
BaeGI	GKGCMC	1 cut(s)	169
BaeI	ACNNNNGTAYC	2 cut(s)	83, 116
Bbv12I	GWGCWC	1 cut(s)	169
BbvI	GCAGC	2 cut(s)	217, 245
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	1 cut(s)	53
BfmI	CTRYAG	1 cut(s)	231
BisI	GCNGC	2 cut(s)	231, 234
BlsI	GCNGC	2 cut(s)	232, 235
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bse1I	ACTGG	1 cut(s)	189
BseGI	GGATG	1 cut(s)	189
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	189
BseSI	GKGCMC	1 cut(s)	169
BseXI	GCAGC	2 cut(s)	217, 245
BshFI	GGCC	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	2 cut(s)	139, 156
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	1 cut(s)	105
BspMAI	CTGCAG	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	189
BssMI	GATC	2 cut(s)	139, 156
BstDEI	CTNAG	1 cut(s)	113
BstF5I	GGATG	1 cut(s)	189
BstKTI	GATC	2 cut(s)	142, 159
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	2 cut(s)	139, 156
BstSFI	CTRYAG	1 cut(s)	231
BstSLI	GKGCMC	1 cut(s)	169
BstV1I	GCAGC	2 cut(s)	217, 245
BsuRI	GGCC	1 cut(s)	74
BtsCI	GGATG	1 cut(s)	189
CviAII	CATG	2 cut(s)	128, 269
CviJI	RGCY	5 cut(s)	74, 137, 230, 236, 249
CviKI_1	RGCY	5 cut(s)	74, 137, 230, 236, 249
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	2 cut(s)	141, 158
DpnII	GATC	2 cut(s)	139, 156
FaeI	CATG	2 cut(s)	131, 272
FaiI	YATR	6 cut(s)	39, 41, 129, 134, 270, 289
FatI	CATG	2 cut(s)	127, 268
FauNDI	CATATG	1 cut(s)	39
Fnu4HI	GCNGC	2 cut(s)	231, 234
FokI	GGATG	1 cut(s)	196
Fsp4HI	GCNGC	2 cut(s)	231, 234
FspBI	CTAG	1 cut(s)	53
GluI	GCNGC	2 cut(s)	231, 234
HaeIII	GGCC	1 cut(s)	74
Hin1II	CATG	2 cut(s)	131, 272
HinfI	GANTC	3 cut(s)	56, 78, 115
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188I	TCNGA	3 cut(s)	16, 23, 198
Hpy188III	TCNNGA	3 cut(s)	86, 121, 143
Hpy8I	GTNNAC	1 cut(s)	167
HpyAV	CCTTC	1 cut(s)	155
HpyCH4V	TGCA	2 cut(s)	167, 233
HpyF3I	CTNAG	1 cut(s)	113
Hsp92II	CATG	2 cut(s)	131, 272
Kzo9I	GATC	2 cut(s)	139, 156
LpnPI	CCDG	5 cut(s)	51, 56, 88, 166, 202
Lsp1109I	GCAGC	2 cut(s)	217, 245
MaeI	CTAG	1 cut(s)	53
MalI	GATC	2 cut(s)	141, 158
MboI	GATC	2 cut(s)	139, 156
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	2 cut(s)	205, 262
MlyI	GAGTC	2 cut(s)	65, 124
MnlI	CCTC	1 cut(s)	38
MseI	TTAA	2 cut(s)	62, 102
MslI	CAYNNNNRTG	1 cut(s)	38
MspA1I	CMGCKG	1 cut(s)	230
NdeI	CATATG	1 cut(s)	39
NdeII	GATC	2 cut(s)	139, 156
NlaIII	CATG	2 cut(s)	131, 272
PfeI	GAWTC	1 cut(s)	78
PkrI	GCNGC	2 cut(s)	232, 235
PleI	GAGTC	2 cut(s)	64, 123
PpsI	GAGTC	2 cut(s)	64, 123
PstI	CTGCAG	1 cut(s)	235
PvuII	CAGCTG	1 cut(s)	230
RseI	CAYNNNNRTG	1 cut(s)	38
SaqAI	TTAA	2 cut(s)	62, 102
SatI	GCNGC	2 cut(s)	231, 234
Sau3AI	GATC	2 cut(s)	139, 156
SchI	GAGTC	2 cut(s)	65, 124
SduI	GDGCHC	1 cut(s)	169
SetI	ASST	5 cut(s)	30, 139, 166, 232, 238
SfcI	CTRYAG	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	38
Sse9I	AATT	2 cut(s)	205, 262
SspMI	CTAG	1 cut(s)	53
TaqI	TCGA	1 cut(s)	159
TasI	AATT	2 cut(s)	205, 262
TfiI	GAWTC	1 cut(s)	78
Tru1I	TTAA	2 cut(s)	62, 102
Tru9I	TTAA	2 cut(s)	62, 102
TseI	GCWGC	2 cut(s)	230, 233
TspDTI	ATGAA	3 cut(s)	56, 70, 123
VneI	GTGCAC	1 cut(s)	165
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.