Rroxscaffold_5G00362710

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000688
Physical Location & Seq
Forward (+)
43734763 .. 43735350
588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00362710.1

Sequence Viewer

Length: 528 bp
ATGGGGCCGAATATCAACTCGGTTAAGTCTAACAAGACGGTGCCACTTTCGGATTACGGAATCGAGATCGCGCCACCAGGCACGGAGTTTTATATGGTGTGGATCCAATACGACGGTGGGTCACATAATCTGTCGGTGTTCATGGCCAACCGTACCGATCGAACAAGGACGGGAAGGGAGCGACATTGTCAACCAAAAGTCCTACTTCGGATTCGCAGCCTTCCACCAGGAGTTACGCCAGCTCAATCGCGTGTTGATGTGGAATCTAACGGTGGAGATTCCGCCGACGTGGAAGGTGGAGGGGACAACGATAAGGTGTGGAAGATAGCACTAGGGGTGGGTGCCGGGTTGGTTTTGGTCCTATTGTGTTTATTCGGGGTGGTTTGTTATGTGCACAAAAGGCGAAAGGCTAAGGCGTCGGACCCTAACATTTTGGGCGCGCTTAAGAGCCTTCCCGAACACCAAGGGAGTTCGCTTACCGAGAGCTTAAGAAAGCCACCAACAACTTCGACGACAAGCACAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

175

Amino Acids

18.84

Weight (kDa)

9.24

Isoelectric Point (pI)

54.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 2 - 53 1e-05 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000688)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09820 FvH4_2g17160 FvH4_2g17160
malus_domestica MD02G1107100.v1.1 MD02G1107300.v1.1 MD05G1144900.v1.1 MD10G1144700.v1.1 MD15G1226500.v1.1
prunus_persica Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.8G183000_v2.0.a1
pyrus_communis pycom05g14000 pycom10g12440 pycom15g20140
rosa_chinensis RchiOBHm_Chr2g0096621 RchiOBHm_Chr6g0281601 RchiOBHm_Chr6g0281651 RchiOBHm_Chr7g0212121
rosa_laevigata RLG00000002926 RLG00000002927 RLG00000002933 RLG00000008638 RLG00000012954 RLG00000012955 RLG00000016656
rosa_multiflora Rmu_co8091766.1_g000001 Rmu_co8287847.1_g000001 Rmu_co8297221.1_g000001 Rmu_co8485327.1_g000001 Rmu_co8512767.1_g000001 Rmu_sc0002316.1_g000041 Rmu_sc0003565.1_g000009 Rmu_sc0014556.1_g000004 Rmu_sc0027573.1_g000001 Rmu_sc0030028.1_g000001
rosa_roxburghii Rroxscaffold_1G00026540 Rroxscaffold_2G00145470 Rroxscaffold_3G00247100 Rroxscaffold_3G00247110 Rroxscaffold_3G00247120 Rroxscaffold_5G00362680 Rroxscaffold_5G00362710 Rroxscaffold_7G00186950
rosa_rugosa Rorug02G0059000 Rorug02G0059100 Rorug06G0142300 Rorug07G0131000 Rorug07G0131100
rosa_samantha Rh1DG155700 Rh2AG106500 Rh2AG171500 Rh2BG108800 Rh2BG178900 Rh2CG110600 Rh2CG176400 Rh2DG110100 Rh2DG177600 Rh4BG120600 Rh6BG258300 Rh6CG257100 Rh6DG249200 Rh6DG249300 Rh7AG264100 Rh7AG264200 Rh7BG257800 Rh7BG257900 Rh7BG258000 Rh7BG258100 Rh7CG280600 Rh7CG280700 Rh7DG270600
rosa_wichuraiana Rw2G008240 Rw6G022110 Rw7G022540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 40, 341
AccII CGCG 3 cut(s) 71, 250, 440
AciI CCGC 1 cut(s) 282
AclWI GGATC 2 cut(s) 97, 110
AcoI YGGCCR 1 cut(s) 144
AcyI GRCGYC 1 cut(s) 416
AfaI GTAC 1 cut(s) 154
AflII CTTAAG 2 cut(s) 443, 487
AhdI GACNNNNNGTC 1 cut(s) 118
AjiI CACGTC 1 cut(s) 289
AjnI CCWGG 2 cut(s) 76, 226
AluBI AGCT 2 cut(s) 242, 486
AluI AGCT 2 cut(s) 242, 486
Alw21I GWGCWC 1 cut(s) 396
Alw44I GTGCAC 1 cut(s) 392
AlwI GGATC 2 cut(s) 97, 110
AoxI GGCC 2 cut(s) 5, 144
ApaLI GTGCAC 1 cut(s) 392
ApeKI GCWGC 1 cut(s) 216
AspLEI GCGC 3 cut(s) 73, 440, 442
AspS9I GGNCC 3 cut(s) 5, 358, 421
AsuC2I CCSGG 1 cut(s) 346
AvaII GGWCC 2 cut(s) 358, 421
BaeGI GKGCMC 1 cut(s) 396
BalI TGGCCA 1 cut(s) 146
BamHI GGATCC 1 cut(s) 102
BanI GGYRCC 2 cut(s) 40, 341
Bbv12I GWGCWC 1 cut(s) 396
BbvI GCAGC 1 cut(s) 228
BciT130I CCWGG 2 cut(s) 78, 228
BcnI CCSGG 1 cut(s) 346
BfaI CTAG 2 cut(s) 332, 526
BfrI CTTAAG 2 cut(s) 443, 487
BisI GCNGC 1 cut(s) 217
BlsI GCNGC 1 cut(s) 218
Bme1390I CCNGG 3 cut(s) 78, 228, 346
Bme18I GGWCC 2 cut(s) 358, 421
BmeRI GACNNNNNGTC 1 cut(s) 118
BmgBI CACGTC 1 cut(s) 289
BmgT120I GGNCC 3 cut(s) 5, 358, 421
BmiI GGNNCC 5 cut(s) 6, 42, 104, 343, 423
BmrFI CCNGG 3 cut(s) 78, 228, 346
Bpu10I CCTNAGC 1 cut(s) 411
BpuMI CCSGG 1 cut(s) 346
BsaHI GRCGYC 1 cut(s) 416
BsaJI CCNNGG 1 cut(s) 463
BseBI CCWGG 2 cut(s) 78, 228
BseDI CCNNGG 1 cut(s) 463
BsePI GCGCGC 1 cut(s) 438
BseSI GKGCMC 1 cut(s) 396
BseXI GCAGC 1 cut(s) 228
Bsh1236I CGCG 3 cut(s) 71, 250, 440
Bsh1285I CGRYCG 1 cut(s) 160
BshFI GGCC 2 cut(s) 7, 146
BshNI GGYRCC 2 cut(s) 40, 341
BsiEI CGRYCG 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 396
BsiSI CCGG 1 cut(s) 345
BslFI GGGAC 1 cut(s) 317
BsmFI GGGAC 1 cut(s) 317
BsnI GGCC 2 cut(s) 7, 146
Bsp1286I GDGCHC 1 cut(s) 396
Bsp143I GATC 3 cut(s) 66, 102, 157
BspACI CCGC 1 cut(s) 282
BspANI GGCC 2 cut(s) 7, 146
BspFNI CGCG 3 cut(s) 71, 250, 440
BspLI GGNNCC 5 cut(s) 6, 42, 104, 343, 423
BspPI GGATC 2 cut(s) 97, 110
BspT107I GGYRCC 2 cut(s) 40, 341
BspTI CTTAAG 2 cut(s) 443, 487
BssECI CCNNGG 1 cut(s) 463
BssHII GCGCGC 1 cut(s) 438
BssMI GATC 3 cut(s) 66, 102, 157
BssNI GRCGYC 1 cut(s) 416
BssT1I CCWWGG 1 cut(s) 463
Bst2UI CCWGG 2 cut(s) 78, 228
Bst4CI ACNGT 4 cut(s) 40, 116, 152, 272
BstACI GRCGYC 1 cut(s) 416
BstAFI CTTAAG 2 cut(s) 443, 487
BstC8I GCNNGC 2 cut(s) 240, 440
BstDEI CTNAG 1 cut(s) 411
BstFNI CGCG 3 cut(s) 71, 250, 440
BstHHI GCGC 3 cut(s) 73, 440, 442
BstKTI GATC 3 cut(s) 69, 105, 160
BstMBI GATC 3 cut(s) 66, 102, 157
BstMCI CGRYCG 1 cut(s) 160
BstMWI GCNNNNNNNGC 1 cut(s) 400
BstNI CCWGG 2 cut(s) 78, 228
BstSCI CCNGG 3 cut(s) 76, 226, 344
BstSLI GKGCMC 1 cut(s) 396
BstUI CGCG 3 cut(s) 71, 250, 440
BstV1I GCAGC 1 cut(s) 228
BstX2I RGATCY 1 cut(s) 102
BstYI RGATCY 1 cut(s) 102
BsuRI GGCC 2 cut(s) 7, 146
BtrI CACGTC 1 cut(s) 289
Cac8I GCNNGC 2 cut(s) 240, 440
CfoI GCGC 3 cut(s) 73, 440, 442
Cfr13I GGNCC 3 cut(s) 5, 358, 421
CseI GACGC 1 cut(s) 405
Csp6I GTAC 1 cut(s) 153
CviAII CATG 1 cut(s) 142
CviJI RGCY 8 cut(s) 7, 146, 219, 242, 410, 450, 486, 496
CviKI_1 RGCY 8 cut(s) 7, 146, 219, 242, 410, 450, 486, 496
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 1 cut(s) 411
DpnI GATC 3 cut(s) 68, 104, 159
DpnII GATC 3 cut(s) 66, 102, 157
DriI GACNNNNNGTC 1 cut(s) 118
EaeI YGGCCR 1 cut(s) 144
Eam1105I GACNNNNNGTC 1 cut(s) 118
EciI GGCGGA 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 463
Eco47I GGWCC 2 cut(s) 358, 421
EcoRII CCWGG 2 cut(s) 76, 226
EcoT14I CCWWGG 1 cut(s) 463
ErhI CCWWGG 1 cut(s) 463
FaeI CATG 1 cut(s) 145
FaiI YATR 5 cut(s) 93, 95, 126, 143, 390
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FaqI GGGAC 1 cut(s) 317
FatI CATG 1 cut(s) 141
Fnu4HI GCNGC 1 cut(s) 217
Fsp4HI GCNGC 1 cut(s) 217
FspBI CTAG 2 cut(s) 332, 526
GlaI GCGC 3 cut(s) 72, 439, 441
GluI GCNGC 1 cut(s) 217
HaeIII GGCC 2 cut(s) 7, 146
HapII CCGG 1 cut(s) 345
HgaI GACGC 1 cut(s) 405
HhaI GCGC 3 cut(s) 73, 440, 442
Hin1I GRCGYC 1 cut(s) 416
Hin1II CATG 1 cut(s) 145
Hin6I GCGC 3 cut(s) 71, 438, 440
HinP1I GCGC 3 cut(s) 71, 438, 440
HincII GTYRAC 1 cut(s) 191
HindII GTYRAC 1 cut(s) 191
HinfI GANTC 4 cut(s) 60, 211, 263, 278
HpaII CCGG 1 cut(s) 345
Hpy166II GTNNAC 2 cut(s) 191, 394
Hpy188I TCNGA 3 cut(s) 52, 210, 421
Hpy188III TCNNGA 2 cut(s) 64, 455
Hpy8I GTNNAC 2 cut(s) 191, 394
Hpy99I CGWCG 4 cut(s) 116, 290, 421, 514
HpyAV CCTTC 4 cut(s) 168, 230, 287, 461
HpyCH4III ACNGT 4 cut(s) 40, 116, 152, 272
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 1 cut(s) 394
HpyF10VI GCNNNNNNNGC 1 cut(s) 400
HpyF3I CTNAG 1 cut(s) 411
HpySE526I ACGT 1 cut(s) 288
Hsp92I GRCGYC 1 cut(s) 416
Hsp92II CATG 1 cut(s) 145
HspAI GCGC 3 cut(s) 71, 438, 440
Kzo9I GATC 3 cut(s) 66, 102, 157
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 6 cut(s) 63, 90, 213, 240, 252, 358
Lsp1109I GCAGC 1 cut(s) 228
MaeI CTAG 2 cut(s) 332, 526
MaeII ACGT 1 cut(s) 288
MaeIII GTNAC 2 cut(s) 120, 232
MalI GATC 3 cut(s) 68, 104, 159
MboI GATC 3 cut(s) 66, 102, 157
MboII GAAGA 1 cut(s) 334
MflI RGATCY 1 cut(s) 102
MhlI GDGCHC 1 cut(s) 396
MlsI TGGCCA 1 cut(s) 146
MluNI TGGCCA 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 399
MnlI CCTC 1 cut(s) 293
Mox20I TGGCCA 1 cut(s) 146
MscI TGGCCA 1 cut(s) 146
MseI TTAA 3 cut(s) 24, 444, 488
Msp20I TGGCCA 1 cut(s) 146
MspCI CTTAAG 2 cut(s) 443, 487
MspI CCGG 1 cut(s) 345
MspR9I CCNGG 3 cut(s) 78, 228, 346
MvaI CCWGG 2 cut(s) 78, 228
MvnI CGCG 3 cut(s) 71, 250, 440
MwoI GCNNNNNNNGC 1 cut(s) 400
NciI CCSGG 1 cut(s) 346
NdeII GATC 3 cut(s) 66, 102, 157
NlaIII CATG 1 cut(s) 145
NlaIV GGNNCC 5 cut(s) 6, 42, 104, 343, 423
NmuCI GTSAC 1 cut(s) 120
PauI GCGCGC 1 cut(s) 438
PfeI GAWTC 4 cut(s) 60, 211, 263, 278
PflFI GACNNNGTC 1 cut(s) 186
PkrI GCNGC 1 cut(s) 218
Ple19I CGATCG 1 cut(s) 160
Psp6I CCWGG 2 cut(s) 76, 226
PspGI CCWGG 2 cut(s) 76, 226
PspN4I GGNNCC 5 cut(s) 6, 42, 104, 343, 423
PspPI GGNCC 3 cut(s) 5, 358, 421
PsuI RGATCY 1 cut(s) 102
PsyI GACNNNGTC 1 cut(s) 186
PteI GCGCGC 1 cut(s) 438
PvuI CGATCG 1 cut(s) 160
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
SaqAI TTAA 3 cut(s) 24, 444, 488
SatI GCNGC 1 cut(s) 217
Sau3AI GATC 3 cut(s) 66, 102, 157
Sau96I GGNCC 3 cut(s) 5, 358, 421
ScrFI CCNGG 3 cut(s) 78, 228, 346
SduI GDGCHC 1 cut(s) 396
SetI ASST 5 cut(s) 244, 291, 298, 318, 488
SinI GGWCC 2 cut(s) 358, 421
SmlI CTYRAG 2 cut(s) 443, 487
SmoI CTYRAG 2 cut(s) 443, 487
SsiI CCGC 1 cut(s) 282
SspMI CTAG 2 cut(s) 332, 526
StyD4I CCNGG 3 cut(s) 76, 226, 344
StyI CCWWGG 1 cut(s) 463
TaaI ACNGT 4 cut(s) 40, 116, 152, 272
TaiI ACGT 1 cut(s) 291
TaqI TCGA 3 cut(s) 63, 160, 509
TfiI GAWTC 4 cut(s) 60, 211, 263, 278
Tru1I TTAA 3 cut(s) 24, 444, 488
Tru9I TTAA 3 cut(s) 24, 444, 488
TseFI GTSAC 1 cut(s) 120
TseI GCWGC 1 cut(s) 216
Tsp45I GTSAC 1 cut(s) 120
TspDTI ATGAA 1 cut(s) 130
TspGWI ACGGA 2 cut(s) 72, 98
Tth111I GACNNNGTC 1 cut(s) 186
Vha464I CTTAAG 2 cut(s) 443, 487
VneI GTGCAC 1 cut(s) 392
VpaK11BI GGWCC 2 cut(s) 358, 421
XcmI CCANNNNNNNNNTGG 1 cut(s) 113
XspI CTAG 2 cut(s) 332, 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.