Rh6DG249200

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000688
Physical Location & Seq
Forward (+)
43733290 .. 43734878
1589 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG249200.1

Sequence Viewer

Length: 933 bp
ATGGTTTTTTCTCAAAGATTATCAATCATCTACTTTGTTTTCACCTTTGCCATAATTTTTGTAGCATCAGCAGCTGATCCTAGGCAATTTCCCTTTACCACTTTCAGTGAAAAAACTGACCAATCTATATTCCATTTCACGCCTCATTCTTCCATTGATCAAGGGGCACTTCAGTTAACCCCAGACTCAGAGAATGCAGAGGTCAGCTATTCTAACAAGTCCGGCAGGATCATGTATCACAAACCTTATAGACTCTGGTCATCTGACAATGAAGACGATGATGGTGTTGCCTCCTTCAACTCAACTTTCCTCATAAACATCTATCGTGAGAAAGACTGGATTGCTGGTGAGGGGTTTGCTTTTCTTATAGCGTCGGATTGGAACATGCCTGAGCAAAGCTATGGGCAGTGGCTAGGCCTCACCAATGCCACCACTGATGGTAATGCTAAAAACCACATGGTTGCCATAGAATTCGACACAAGAAAGCAAGATTTCGACCCCGATGACAACCATATAGGCCTCAACATCAACTCTGTAAGATCAAGTAAGACTGTTTCTCTTGAGGCTTTCGACATTGAGATATCACCGGAGGTAGGCACCAACTACACCGTGTGGGTGCAATACAATGGCAGCTCAAAAGTCATTGAAGTCTACATGGCTAAGCGCATCATAAACATCCCACCAGTAAGGCCGGAGACACCGCTTATGAAGGAGCCAGTAAACTTGAAACAATATCTAAAACAAGACTCCTACTTTGGATTTTCTGGTTCCACAGAAATGGAATTTCAGAAAAACAGAAAGGTCAAGTTAAGCGTCAACAATCAACCACTAATTAATAGGCAACTAGTTTATATATTGCTTCACCAGAAAACTATTGAATTTGGAATAGTCTATCGCATTGAACAGGTCTTCGTTTATCCTTTTAGGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

310

Amino Acids

35.71

Weight (kDa)

5.34

Isoelectric Point (pI)

50.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 29 - 265 1.5e-62 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000688)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09820 FvH4_2g17160 FvH4_2g17160
malus_domestica MD02G1107100.v1.1 MD02G1107300.v1.1 MD05G1144900.v1.1 MD10G1144700.v1.1 MD15G1226500.v1.1
prunus_persica Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.8G183000_v2.0.a1
pyrus_communis pycom05g14000 pycom10g12440 pycom15g20140
rosa_chinensis RchiOBHm_Chr2g0096621 RchiOBHm_Chr6g0281601 RchiOBHm_Chr6g0281651 RchiOBHm_Chr7g0212121
rosa_laevigata RLG00000002926 RLG00000002927 RLG00000002933 RLG00000008638 RLG00000012954 RLG00000012955 RLG00000016656
rosa_multiflora Rmu_co8091766.1_g000001 Rmu_co8287847.1_g000001 Rmu_co8297221.1_g000001 Rmu_co8485327.1_g000001 Rmu_co8512767.1_g000001 Rmu_sc0002316.1_g000041 Rmu_sc0003565.1_g000009 Rmu_sc0014556.1_g000004 Rmu_sc0027573.1_g000001 Rmu_sc0030028.1_g000001
rosa_roxburghii Rroxscaffold_1G00026540 Rroxscaffold_2G00145470 Rroxscaffold_3G00247100 Rroxscaffold_3G00247110 Rroxscaffold_3G00247120 Rroxscaffold_5G00362680 Rroxscaffold_5G00362710 Rroxscaffold_7G00186950
rosa_rugosa Rorug02G0059000 Rorug02G0059100 Rorug06G0142300 Rorug07G0131000 Rorug07G0131100
rosa_samantha Rh1DG155700 Rh2AG106500 Rh2AG171500 Rh2BG108800 Rh2BG178900 Rh2CG110600 Rh2CG176400 Rh2DG110100 Rh2DG177600 Rh4BG120600 Rh6BG258300 Rh6CG257100 Rh6DG249200 Rh6DG249300 Rh7AG264100 Rh7AG264200 Rh7BG257800 Rh7BG257900 Rh7BG258000 Rh7BG258100 Rh7CG280600 Rh7CG280700 Rh7DG270600
rosa_wichuraiana Rw2G008240 Rw6G022110 Rw7G022540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 596
AccI GTMKAC 1 cut(s) 651
AciI CCGC 1 cut(s) 701
AclWI GGATC 2 cut(s) 71, 236
AcsI RAATTY 3 cut(s) 470, 782, 878
AcuI CTGAAG 1 cut(s) 155
AdeI CACNNNGTG 1 cut(s) 612
AfiI CCNNNNNNNGG 1 cut(s) 593
AgsI TTSAA 5 cut(s) 298, 647, 727, 878, 902
AhlI ACTAGT 1 cut(s) 844
AluBI AGCT 4 cut(s) 74, 207, 399, 633
AluI AGCT 4 cut(s) 74, 207, 399, 633
Alw26I GTCTC 1 cut(s) 689
AlwI GGATC 2 cut(s) 71, 236
AlwNI CAGNNNCTG 1 cut(s) 74
AoxI GGCC 3 cut(s) 415, 517, 689
ApeKI GCWGC 2 cut(s) 71, 630
ApoI RAATTY 3 cut(s) 470, 782, 878
ArsI GACNNNNNNTTYG 2 cut(s) 737, 769
AseI ATTAAT 1 cut(s) 834
AspA2I CCTAGG 1 cut(s) 80
AspLEI GCGC 1 cut(s) 666
AsuHPI GGTGA 5 cut(s) 34, 359, 412, 576, 854
AvrII CCTAGG 1 cut(s) 80
BaeGI GKGCMC 1 cut(s) 169
BanI GGYRCC 1 cut(s) 596
BbsI GAAGAC 2 cut(s) 279, 901
BbvI GCAGC 2 cut(s) 83, 642
BccI CCATC 2 cut(s) 275, 431
BclI TGATCA 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 689
BcuI ACTAGT 1 cut(s) 844
BfaI CTAG 3 cut(s) 81, 413, 845
BisI GCNGC 2 cut(s) 72, 631
BlnI CCTAGG 1 cut(s) 80
BlpI GCTNAGC 1 cut(s) 660
BlsI GCNGC 2 cut(s) 73, 632
BmiI GGNNCC 3 cut(s) 598, 714, 769
BmsI GCATC 2 cut(s) 74, 675
BoxI GACNNNNGTC 1 cut(s) 256
BpiI GAAGAC 2 cut(s) 279, 901
Bpu10I CCTNAGC 1 cut(s) 390
Bpu1102I GCTNAGC 1 cut(s) 660
BpuEI CTTGAG 1 cut(s) 581
BsaJI CCNNGG 1 cut(s) 80
BsaWI WCCGGW 1 cut(s) 586
Bsc4I CCNNNNNNNGG 1 cut(s) 593
Bse1I ACTGG 3 cut(s) 341, 683, 716
BseDI CCNNGG 1 cut(s) 80
BseGI GGATG 1 cut(s) 675
BseLI CCNNNNNNNGG 1 cut(s) 593
BseMII CTCAG 2 cut(s) 201, 381
BseNI ACTGG 3 cut(s) 341, 683, 716
BseSI GKGCMC 1 cut(s) 169
BseXI GCAGC 2 cut(s) 83, 642
BshFI GGCC 3 cut(s) 417, 519, 691
BshNI GGYRCC 1 cut(s) 596
BsiSI CCGG 3 cut(s) 222, 587, 692
BslI CCNNNNNNNGG 1 cut(s) 593
BsmAI GTCTC 1 cut(s) 689
BsmI GAATGC 1 cut(s) 199
BsnI GGCC 3 cut(s) 417, 519, 691
Bsp1286I GDGCHC 1 cut(s) 169
Bsp143I GATC 4 cut(s) 76, 157, 228, 539
Bsp1720I GCTNAGC 1 cut(s) 660
BspACI CCGC 1 cut(s) 701
BspANI GGCC 3 cut(s) 417, 519, 691
BspCNI CTCAG 2 cut(s) 200, 382
BspLI GGNNCC 3 cut(s) 598, 714, 769
BspPI GGATC 2 cut(s) 71, 236
BspT107I GGYRCC 1 cut(s) 596
BsrI ACTGG 3 cut(s) 341, 683, 716
BssECI CCNNGG 1 cut(s) 80
BssMI GATC 4 cut(s) 76, 157, 228, 539
BssT1I CCWWGG 1 cut(s) 80
Bst4CI ACNGT 2 cut(s) 553, 610
BstDEI CTNAG 3 cut(s) 187, 390, 660
BstF5I GGATG 1 cut(s) 675
BstHHI GCGC 1 cut(s) 666
BstKTI GATC 4 cut(s) 79, 160, 231, 542
BstMAI GTCTC 1 cut(s) 689
BstMBI GATC 4 cut(s) 76, 157, 228, 539
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNSI RCATGY 1 cut(s) 388
BstPAI GACNNNNGTC 1 cut(s) 256
BstSLI GKGCMC 1 cut(s) 169
BstV1I GCAGC 2 cut(s) 83, 642
BstV2I GAAGAC 2 cut(s) 279, 901
BstXI CCANNNNNNTGG 1 cut(s) 778
BsuRI GGCC 3 cut(s) 417, 519, 691
BtsCI GGATG 1 cut(s) 675
BtsI GCAGTG 1 cut(s) 413
BtsIMutI CAGTG 3 cut(s) 112, 413, 432
CaiI CAGNNNCTG 1 cut(s) 74
CfoI GCGC 1 cut(s) 666
CseI GACGC 2 cut(s) 360, 802
CviAII CATG 4 cut(s) 232, 385, 457, 655
DdeI CTNAG 3 cut(s) 187, 390, 660
DpnI GATC 4 cut(s) 78, 159, 230, 541
DpnII GATC 4 cut(s) 76, 157, 228, 539
DraIII CACNNNGTG 1 cut(s) 612
Eco130I CCWWGG 1 cut(s) 80
Eco147I AGGCCT 2 cut(s) 417, 519
Eco32I GATATC 1 cut(s) 582
Eco57I CTGAAG 1 cut(s) 155
EcoRI GAATTC 1 cut(s) 470
EcoRV GATATC 1 cut(s) 582
EcoT14I CCWWGG 1 cut(s) 80
ErhI CCWWGG 1 cut(s) 80
FaeI CATG 4 cut(s) 235, 388, 460, 658
FalI AAGNNNNNCTT 2 cut(s) 153, 185
FatI CATG 4 cut(s) 231, 384, 456, 654
FbaI TGATCA 1 cut(s) 157
FblI GTMKAC 1 cut(s) 651
Fnu4HI GCNGC 2 cut(s) 72, 631
FokI GGATG 1 cut(s) 662
Fsp4HI GCNGC 2 cut(s) 72, 631
FspBI CTAG 3 cut(s) 81, 413, 845
GlaI GCGC 1 cut(s) 665
GluI GCNGC 2 cut(s) 72, 631
HaeIII GGCC 3 cut(s) 417, 519, 691
HapII CCGG 3 cut(s) 222, 587, 692
HgaI GACGC 2 cut(s) 360, 802
HhaI GCGC 1 cut(s) 666
Hin1II CATG 4 cut(s) 235, 388, 460, 658
Hin6I GCGC 1 cut(s) 664
HinP1I GCGC 1 cut(s) 664
HincII GTYRAC 2 cut(s) 177, 817
HindII GTYRAC 2 cut(s) 177, 817
HinfI GANTC 3 cut(s) 185, 252, 746
HpaI GTTAAC 1 cut(s) 177
HpaII CCGG 3 cut(s) 222, 587, 692
HphI GGTGA 5 cut(s) 34, 359, 412, 576, 854
Hpy166II GTNNAC 4 cut(s) 177, 652, 721, 817
Hpy188I TCNGA 4 cut(s) 190, 265, 376, 789
Hpy188III TCNNGA 2 cut(s) 326, 560
Hpy8I GTNNAC 4 cut(s) 177, 652, 721, 817
Hpy99I CGWCG 1 cut(s) 376
HpyAV CCTTC 2 cut(s) 304, 703
HpyCH4III ACNGT 2 cut(s) 553, 610
HpyCH4V TGCA 2 cut(s) 197, 619
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 3 cut(s) 187, 390, 660
Hsp92II CATG 4 cut(s) 235, 388, 460, 658
HspAI GCGC 1 cut(s) 664
Ksp22I TGATCA 1 cut(s) 157
KspAI GTTAAC 1 cut(s) 177
Kzo9I GATC 4 cut(s) 76, 157, 228, 539
LmnI GCTCC 1 cut(s) 712
Lsp1109I GCAGC 2 cut(s) 83, 642
LweI GCATC 2 cut(s) 74, 675
MaeI CTAG 3 cut(s) 81, 413, 845
MalI GATC 4 cut(s) 78, 159, 230, 541
MboI GATC 4 cut(s) 76, 157, 228, 539
MboII GAAGA 3 cut(s) 141, 284, 901
MhlI GDGCHC 1 cut(s) 169
MluCI AATT 6 cut(s) 54, 86, 470, 782, 831, 878
MlyI GAGTC 3 cut(s) 179, 246, 740
MmeI TCCRAC 1 cut(s) 354
MnlI CCTC 9 cut(s) 153, 193, 301, 320, 343, 428, 530, 556, 583
MseI TTAA 3 cut(s) 176, 809, 834
MslI CAYNNNNRTG 1 cut(s) 776
MspA1I CMGCKG 1 cut(s) 74
MspI CCGG 3 cut(s) 222, 587, 692
Mva1269I GAATGC 1 cut(s) 199
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 4 cut(s) 76, 157, 228, 539
NlaIII CATG 4 cut(s) 235, 388, 460, 658
NlaIV GGNNCC 3 cut(s) 598, 714, 769
NspI RCATGY 1 cut(s) 388
PceI AGGCCT 2 cut(s) 417, 519
PctI GAATGC 1 cut(s) 199
PkrI GCNGC 2 cut(s) 73, 632
PleI GAGTC 3 cut(s) 179, 246, 740
PpsI GAGTC 3 cut(s) 179, 246, 740
PshAI GACNNNNGTC 1 cut(s) 256
PshBI ATTAAT 1 cut(s) 834
PspN4I GGNNCC 3 cut(s) 598, 714, 769
PstNI CAGNNNCTG 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 74
RseI CAYNNNNRTG 1 cut(s) 776
SaqAI TTAA 3 cut(s) 176, 809, 834
SatI GCNGC 2 cut(s) 72, 631
Sau3AI GATC 4 cut(s) 76, 157, 228, 539
SchI GAGTC 3 cut(s) 179, 246, 740
SduI GDGCHC 1 cut(s) 169
SfaNI GCATC 2 cut(s) 74, 675
SmiMI CAYNNNNRTG 1 cut(s) 776
SmlI CTYRAG 1 cut(s) 560
SmoI CTYRAG 1 cut(s) 560
SpeI ACTAGT 1 cut(s) 844
Sse9I AATT 6 cut(s) 54, 86, 470, 782, 831, 878
SseBI AGGCCT 2 cut(s) 417, 519
SsiI CCGC 1 cut(s) 701
SspMI CTAG 3 cut(s) 81, 413, 845
StuI AGGCCT 2 cut(s) 417, 519
StyI CCWWGG 1 cut(s) 80
TaaI ACNGT 2 cut(s) 553, 610
TaqI TCGA 3 cut(s) 474, 495, 570
TasI AATT 6 cut(s) 54, 86, 470, 782, 831, 878
Tru1I TTAA 3 cut(s) 176, 809, 834
Tru9I TTAA 3 cut(s) 176, 809, 834
TscAI CASTG 3 cut(s) 112, 413, 439
TseI GCWGC 2 cut(s) 71, 630
TspDTI ATGAA 2 cut(s) 285, 722
TspRI CASTG 3 cut(s) 112, 413, 439
VspI ATTAAT 1 cut(s) 834
XapI RAATTY 3 cut(s) 470, 782, 878
XceI RCATGY 1 cut(s) 388
XmaJI CCTAGG 1 cut(s) 80
XmiI GTMKAC 1 cut(s) 651
XspI CTAG 3 cut(s) 81, 413, 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.