Rmu_co8485327.1_g000001

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8485327.1
OG0000688
Physical Location & Seq
Forward (+)
50 .. 787
738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8485327.1_g000001.1.cds

Sequence Viewer

Length: 738 bp
atgccaaatggtagcgttgataggcacctatataaagcttcaaaccagaatacactcaattgggagcatcgatgcaagatcctagctggtgtggcgtcagctttgcattatctgcaaaatgagtatgatcaaaaagtggtgcaccgtgacctcaaagctagtaacatattgcttgactctgagttcaatgctcgccttggagactttggccttgcccgagccttggaacaagagaggaactcatatgctgaactagaactagcaggagttgcgggtaccctgggctatgttgctccagagtgcttccatacaaggaaggctactccagaatctgatgttttcagtttcggggcggttgtgcttgaaattgtgtgtgggaaaagtcctgggattcagattattcatggacaacaccagttttctttggtcgattgggtgtggatgttgcatcgagaaggatgtattgaggaagctgtcgatgagcgactgaacagtaattacgcgttggatgaagcaaagaagcttttgcttcttggattggcgtgttcacatcctattgctagtgagcggcctcaaacacaagccatatgccagattatatccggaaccatgtcagtccctagtgtgcctccattcaagcctgttttcacatggccttccatgggtaccgcatatagcagcactgacagtacagtttctaacgtcactctttctaggatcacagtatctcttccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

245

Amino Acids

27.0

Weight (kDa)

5.83

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000688)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09820 FvH4_2g17160 FvH4_2g17160
malus_domestica MD02G1107100.v1.1 MD02G1107300.v1.1 MD05G1144900.v1.1 MD10G1144700.v1.1 MD15G1226500.v1.1
prunus_persica Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.8G183000_v2.0.a1
pyrus_communis pycom05g14000 pycom10g12440 pycom15g20140
rosa_chinensis RchiOBHm_Chr2g0096621 RchiOBHm_Chr6g0281601 RchiOBHm_Chr6g0281651 RchiOBHm_Chr7g0212121
rosa_laevigata RLG00000002926 RLG00000002927 RLG00000002933 RLG00000008638 RLG00000012954 RLG00000012955 RLG00000016656
rosa_multiflora Rmu_co8091766.1_g000001 Rmu_co8287847.1_g000001 Rmu_co8297221.1_g000001 Rmu_co8485327.1_g000001 Rmu_co8512767.1_g000001 Rmu_sc0002316.1_g000041 Rmu_sc0003565.1_g000009 Rmu_sc0014556.1_g000004 Rmu_sc0027573.1_g000001 Rmu_sc0030028.1_g000001
rosa_roxburghii Rroxscaffold_1G00026540 Rroxscaffold_2G00145470 Rroxscaffold_3G00247100 Rroxscaffold_3G00247110 Rroxscaffold_3G00247120 Rroxscaffold_5G00362680 Rroxscaffold_5G00362710 Rroxscaffold_7G00186950
rosa_rugosa Rorug02G0059000 Rorug02G0059100 Rorug06G0142300 Rorug07G0131000 Rorug07G0131100
rosa_samantha Rh1DG155700 Rh2AG106500 Rh2AG171500 Rh2BG108800 Rh2BG178900 Rh2CG110600 Rh2CG176400 Rh2DG110100 Rh2DG177600 Rh4BG120600 Rh6BG258300 Rh6CG257100 Rh6DG249200 Rh6DG249300 Rh7AG264100 Rh7AG264200 Rh7BG257800 Rh7BG257900 Rh7BG258000 Rh7BG258100 Rh7CG280600 Rh7CG280700 Rh7DG270600
rosa_wichuraiana Rw2G008240 Rw6G022110 Rw7G022540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 275, 665
AccB1I GGYRCC 3 cut(s) 24, 275, 665
AccBSI CCGCTC 1 cut(s) 568
AccII CGCG 1 cut(s) 503
AccIII TCCGGA 1 cut(s) 602
AciI CCGC 4 cut(s) 272, 353, 568, 669
AclWI GGATC 2 cut(s) 73, 725
AcyI GRCGYC 1 cut(s) 95
AfaI GTAC 3 cut(s) 277, 667, 691
AfiI CCNNNNNNNGG 2 cut(s) 223, 662
AflIII ACRYGT 1 cut(s) 501
AgsI TTSAA 4 cut(s) 42, 187, 365, 637
AjnI CCWGG 2 cut(s) 279, 385
AluBI AGCT 6 cut(s) 38, 86, 101, 158, 473, 523
AluI AGCT 6 cut(s) 38, 86, 101, 158, 473, 523
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 1 cut(s) 195
Alw44I GTGCAC 1 cut(s) 140
AlwI GGATC 2 cut(s) 73, 725
AlwNI CAGNNNCTG 1 cut(s) 332
Ama87I CYCGRG 1 cut(s) 216
Aor13HI TCCGGA 1 cut(s) 602
AoxI GGCC 3 cut(s) 208, 569, 653
ApaLI GTGCAC 1 cut(s) 140
ApeKI GCWGC 1 cut(s) 678
Asp718I GGTACC 2 cut(s) 275, 665
AvaI CYCGRG 1 cut(s) 216
BaeGI GKGCMC 1 cut(s) 144
BanI GGYRCC 3 cut(s) 24, 275, 665
Bbv12I GWGCWC 1 cut(s) 144
BbvI GCAGC 1 cut(s) 690
BciT130I CCWGG 2 cut(s) 281, 387
BclI TGATCA 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 195
BfaI CTAG 7 cut(s) 83, 159, 254, 260, 561, 621, 714
BisI GCNGC 2 cut(s) 569, 679
BlsI GCNGC 2 cut(s) 570, 680
Bme1390I CCNGG 2 cut(s) 281, 387
BmeT110I CYCGRG 1 cut(s) 216
BmiI GGNNCC 4 cut(s) 26, 277, 607, 667
BmrFI CCNGG 2 cut(s) 281, 387
BmsI GCATC 3 cut(s) 62, 76, 457
BplI GAGNNNNNCTC 2 cut(s) 224, 256
BpmI CTGGAG 2 cut(s) 279, 309
Bsa29I ATCGAT 1 cut(s) 70
BsaHI GRCGYC 1 cut(s) 95
BsaJI CCNNGG 6 cut(s) 196, 222, 279, 280, 386, 660
BsaWI WCCGGW 1 cut(s) 602
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 662
Bse1I ACTGG 1 cut(s) 415
BseAI TCCGGA 1 cut(s) 602
BseBI CCWGG 2 cut(s) 281, 387
BseCI ATCGAT 1 cut(s) 70
BseDI CCNNGG 6 cut(s) 196, 222, 279, 280, 386, 660
BseGI GGATG 4 cut(s) 447, 464, 514, 550
BseLI CCNNNNNNNGG 2 cut(s) 223, 662
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 415
BseSI GKGCMC 1 cut(s) 144
BseXI GCAGC 1 cut(s) 690
Bsh1236I CGCG 1 cut(s) 503
BshFI GGCC 3 cut(s) 210, 571, 655
BshNI GGYRCC 3 cut(s) 24, 275, 665
BshVI ATCGAT 1 cut(s) 70
BsiHKAI GWGCWC 1 cut(s) 144
BsiHKCI CYCGRG 1 cut(s) 216
BsiSI CCGG 1 cut(s) 603
BslFI GGGAC 1 cut(s) 602
BslI CCNNNNNNNGG 2 cut(s) 223, 662
BsmAI GTCTC 1 cut(s) 195
BsmFI GGGAC 1 cut(s) 602
BsnI GGCC 3 cut(s) 210, 571, 655
BsoBI CYCGRG 1 cut(s) 216
Bsp1286I GDGCHC 1 cut(s) 144
Bsp13I TCCGGA 1 cut(s) 602
Bsp143I GATC 3 cut(s) 78, 127, 717
Bsp19I CCATGG 1 cut(s) 660
BspACI CCGC 4 cut(s) 272, 353, 568, 669
BspANI GGCC 3 cut(s) 210, 571, 655
BspCNI CTCAG 1 cut(s) 172
BspDI ATCGAT 1 cut(s) 70
BspEI TCCGGA 1 cut(s) 602
BspFNI CGCG 1 cut(s) 503
BspLI GGNNCC 4 cut(s) 26, 277, 607, 667
BspPI GGATC 2 cut(s) 73, 725
BspT107I GGYRCC 3 cut(s) 24, 275, 665
BsrBI CCGCTC 1 cut(s) 568
BsrI ACTGG 1 cut(s) 415
BssECI CCNNGG 6 cut(s) 196, 222, 279, 280, 386, 660
BssMI GATC 3 cut(s) 78, 127, 717
BssNI GRCGYC 1 cut(s) 95
BssT1I CCWWGG 3 cut(s) 196, 222, 660
Bst2UI CCWGG 2 cut(s) 281, 387
Bst4CI ACNGT 5 cut(s) 146, 494, 689, 694, 724
Bst6I CTCTTC 1 cut(s) 735
BstACI GRCGYC 1 cut(s) 95
BstAPI GCANNNNNTGC 2 cut(s) 112, 269
BstC8I GCNNGC 1 cut(s) 193
BstDEI CTNAG 2 cut(s) 180, 735
BstDSI CCRYGG 1 cut(s) 660
BstF5I GGATG 4 cut(s) 447, 464, 514, 550
BstFNI CGCG 1 cut(s) 503
BstKTI GATC 3 cut(s) 81, 130, 720
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 3 cut(s) 78, 127, 717
BstMWI GCNNNNNNNGC 3 cut(s) 92, 112, 269
BstNI CCWGG 2 cut(s) 281, 387
BstSCI CCNGG 2 cut(s) 279, 385
BstSLI GKGCMC 1 cut(s) 144
BstUI CGCG 1 cut(s) 503
BstV1I GCAGC 1 cut(s) 690
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
Bsu15I ATCGAT 1 cut(s) 70
BsuRI GGCC 3 cut(s) 210, 571, 655
BsuTUI ATCGAT 1 cut(s) 70
BtgI CCRYGG 1 cut(s) 660
BtsCI GGATG 4 cut(s) 447, 464, 514, 550
BtsIMutI CAGTG 1 cut(s) 681
Cac8I GCNNGC 1 cut(s) 193
CaiI CAGNNNCTG 1 cut(s) 332
ClaI ATCGAT 1 cut(s) 70
CseI GACGC 1 cut(s) 84
Csp6I GTAC 3 cut(s) 276, 666, 690
CviAII CATG 4 cut(s) 404, 610, 651, 661
CviQI GTAC 3 cut(s) 276, 666, 690
DdeI CTNAG 2 cut(s) 180, 735
DpnI GATC 3 cut(s) 80, 129, 719
DpnII GATC 3 cut(s) 78, 127, 717
Eam1104I CTCTTC 1 cut(s) 735
EarI CTCTTC 1 cut(s) 735
Eco130I CCWWGG 3 cut(s) 196, 222, 660
Eco88I CYCGRG 1 cut(s) 216
EcoRII CCWGG 2 cut(s) 279, 385
EcoT14I CCWWGG 3 cut(s) 196, 222, 660
ErhI CCWWGG 3 cut(s) 196, 222, 660
FaeI CATG 4 cut(s) 407, 613, 654, 664
FaqI GGGAC 1 cut(s) 602
FatI CATG 4 cut(s) 403, 609, 650, 660
FauI CCCGC 1 cut(s) 265
FauNDI CATATG 2 cut(s) 244, 587
FbaI TGATCA 1 cut(s) 127
Fnu4HI GCNGC 2 cut(s) 569, 679
FokI GGATG 4 cut(s) 454, 471, 521, 537
Fsp4HI GCNGC 2 cut(s) 569, 679
FspBI CTAG 7 cut(s) 83, 159, 254, 260, 561, 621, 714
GluI GCNGC 2 cut(s) 569, 679
GsuI CTGGAG 2 cut(s) 279, 309
HaeIII GGCC 3 cut(s) 210, 571, 655
HapII CCGG 1 cut(s) 603
HgaI GACGC 1 cut(s) 84
Hin1I GRCGYC 1 cut(s) 95
Hin1II CATG 4 cut(s) 407, 613, 654, 664
HindIII AAGCTT 2 cut(s) 36, 521
HinfI GANTC 3 cut(s) 176, 329, 391
HpaII CCGG 1 cut(s) 603
Hpy166II GTNNAC 2 cut(s) 142, 548
Hpy188I TCNGA 3 cut(s) 181, 334, 396
Hpy188III TCNNGA 4 cut(s) 296, 326, 452, 603
Hpy8I GTNNAC 2 cut(s) 142, 548
HpyAV CCTTC 3 cut(s) 310, 449, 666
HpyCH4III ACNGT 5 cut(s) 146, 494, 689, 694, 724
HpyCH4IV ACGT 1 cut(s) 702
HpyCH4V TGCA 5 cut(s) 75, 106, 115, 142, 448
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 112, 269
HpyF3I CTNAG 2 cut(s) 180, 735
HpySE526I ACGT 1 cut(s) 702
Hsp92I GRCGYC 1 cut(s) 95
Hsp92II CATG 4 cut(s) 407, 613, 654, 664
Kpn2I TCCGGA 1 cut(s) 602
KpnI GGTACC 2 cut(s) 279, 669
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 3 cut(s) 78, 127, 717
LmnI GCTCC 2 cut(s) 64, 298
Lsp1109I GCAGC 1 cut(s) 690
LweI GCATC 3 cut(s) 62, 76, 457
MaeI CTAG 7 cut(s) 83, 159, 254, 260, 561, 621, 714
MaeII ACGT 1 cut(s) 702
MaeIII GTNAC 3 cut(s) 146, 161, 703
MalI GATC 3 cut(s) 80, 129, 719
MbiI CCGCTC 1 cut(s) 568
MboI GATC 3 cut(s) 78, 127, 717
MboII GAAGA 1 cut(s) 722
MfeI CAATTG 1 cut(s) 58
MflI RGATCY 1 cut(s) 78
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 3 cut(s) 58, 366, 496
MluI ACGCGT 1 cut(s) 501
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 1 cut(s) 486
MnlI CCTC 5 cut(s) 161, 228, 460, 582, 639
MroI TCCGGA 1 cut(s) 602
MspI CCGG 1 cut(s) 603
MspR9I CCNGG 2 cut(s) 281, 387
MunI CAATTG 1 cut(s) 58
MvaI CCWGG 2 cut(s) 281, 387
MvnI CGCG 1 cut(s) 503
MwoI GCNNNNNNNGC 3 cut(s) 92, 112, 269
NcoI CCATGG 1 cut(s) 660
NdeI CATATG 2 cut(s) 244, 587
NdeII GATC 3 cut(s) 78, 127, 717
NlaIII CATG 4 cut(s) 407, 613, 654, 664
NlaIV GGNNCC 4 cut(s) 26, 277, 607, 667
NmuCI GTSAC 2 cut(s) 146, 703
PasI CCCWGGG 1 cut(s) 280
PfeI GAWTC 2 cut(s) 329, 391
PkrI GCNGC 2 cut(s) 570, 680
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
Psp6I CCWGG 2 cut(s) 279, 385
PspGI CCWGG 2 cut(s) 279, 385
PspN4I GGNNCC 4 cut(s) 26, 277, 607, 667
PsrI GAACNNNNNNTAC 2 cut(s) 482, 514
PstNI CAGNNNCTG 1 cut(s) 332
PsuI RGATCY 1 cut(s) 78
RsaI GTAC 3 cut(s) 277, 667, 691
RsaNI GTAC 3 cut(s) 276, 666, 690
SatI GCNGC 2 cut(s) 569, 679
Sau3AI GATC 3 cut(s) 78, 127, 717
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 2 cut(s) 281, 387
SduI GDGCHC 1 cut(s) 144
SetI ASST 9 cut(s) 30, 40, 88, 103, 153, 160, 475, 525, 705
SfaNI GCATC 3 cut(s) 62, 76, 457
Sse9I AATT 3 cut(s) 58, 366, 496
SsiI CCGC 4 cut(s) 272, 353, 568, 669
SspMI CTAG 7 cut(s) 83, 159, 254, 260, 561, 621, 714
StyD4I CCNGG 2 cut(s) 279, 385
StyI CCWWGG 3 cut(s) 196, 222, 660
TaaI ACNGT 5 cut(s) 146, 494, 689, 694, 724
TaiI ACGT 1 cut(s) 705
TaqI TCGA 4 cut(s) 70, 429, 451, 477
TasI AATT 3 cut(s) 58, 366, 496
TatI WGTACW 1 cut(s) 689
TauI GCSGC 1 cut(s) 571
TfiI GAWTC 2 cut(s) 329, 391
TscAI CASTG 1 cut(s) 688
TseFI GTSAC 2 cut(s) 146, 703
TseI GCWGC 1 cut(s) 678
Tsp45I GTSAC 2 cut(s) 146, 703
TspDTI ATGAA 2 cut(s) 392, 525
TspRI CASTG 1 cut(s) 688
VneI GTGCAC 1 cut(s) 140
XspI CTAG 7 cut(s) 83, 159, 254, 260, 561, 621, 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.