Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000688

Physical Location & Seq

Genomic Coordinates Reverse (-)

23490167 .. 23490757

Gene Structure 591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG258100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCGTTGGAGTTAATCGCAGGTTCAGTATTTGCAGTGCTGTATGATCGTGTTTCGCGAGCTATGGAAAGGAAATCAGAGTTCAGATACCTCCTCACACATATGAAACGCACCCTAGAGTCTTTAACAGGACAGGCCAGATTCATTCAAGAGATACGGGAGTTTAATGATGAACTGAGTCTCCCGAACCATGACATAGCTGATCTTGAAACACAAATGATCGAAGGTGCACAACTCGTTGGCAGGATGTCCAGTTTTCGTATGTACAACTATTGCTGCATGGATGGTTGTGACGACCAACTTTATGAATTGAATAGGTCTCTTGATAGACTTTTAGACAACTTGCAGCTGCAGCAAGCAAGGGATGTGAAGGAGATCTTGAAATTGTCTAGGCATTTGAAACAAAACATGATGCACAGAAGATCAATCACAGAATCACATAACATGACACCTGCACAAGAACTAAACCATATATGCAGCACACCAGAAGCTTTCCTAGTCGGATCAGGAATAACCACCTGGATTCACACTTTCAATACCAGCAGCCACAGCTTGTCCAATAGCATTCATCGAGGCAAACATCTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

196

Amino Acids

22.73

Weight (kDa)

6.55

Isoelectric Point (pI)

52.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	8 - 134	3.6e-16	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09820 FvH4_2g17160 FvH4_2g17160
malus_domestica	MD02G1107100.v1.1 MD02G1107300.v1.1 MD05G1144900.v1.1 MD10G1144700.v1.1 MD15G1226500.v1.1
prunus_persica	Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.8G183000_v2.0.a1
pyrus_communis	pycom05g14000 pycom10g12440 pycom15g20140
rosa_chinensis	RchiOBHm_Chr2g0096621 RchiOBHm_Chr6g0281601 RchiOBHm_Chr6g0281651 RchiOBHm_Chr7g0212121
rosa_laevigata	RLG00000002926 RLG00000002927 RLG00000002933 RLG00000008638 RLG00000012954 RLG00000012955 RLG00000016656
rosa_multiflora	Rmu_co8091766.1_g000001 Rmu_co8287847.1_g000001 Rmu_co8297221.1_g000001 Rmu_co8485327.1_g000001 Rmu_co8512767.1_g000001 Rmu_sc0002316.1_g000041 Rmu_sc0003565.1_g000009 Rmu_sc0014556.1_g000004 Rmu_sc0027573.1_g000001 Rmu_sc0030028.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026540 Rroxscaffold_2G00145470 Rroxscaffold_3G00247100 Rroxscaffold_3G00247110 Rroxscaffold_3G00247120 Rroxscaffold_5G00362680 Rroxscaffold_5G00362710 Rroxscaffold_7G00186950
rosa_rugosa	Rorug02G0059000 Rorug02G0059100 Rorug06G0142300 Rorug07G0131000 Rorug07G0131100
rosa_samantha	Rh1DG155700 Rh2AG106500 Rh2AG171500 Rh2BG108800 Rh2BG178900 Rh2CG110600 Rh2CG176400 Rh2DG110100 Rh2DG177600 Rh4BG120600 Rh6BG258300 Rh6CG257100 Rh6DG249200 Rh6DG249300 Rh7AG264100 Rh7AG264200 Rh7BG257800 Rh7BG257900 Rh7BG258000 Rh7BG258100 Rh7CG280600 Rh7CG280700 Rh7DG270600
rosa_wichuraiana	Rw2G008240 Rw6G022110 Rw7G022540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	460
Acc36I	ACCTGC	2 cut(s)	11, 460
AccII	CGCG	1 cut(s)	58
AclWI	GGATC	1 cut(s)	511
AfaI	GTAC	1 cut(s)	266
AgsI	TTSAA	7 cut(s)	149, 209, 313, 382, 400, 535, 587
AjnI	CCWGG	1 cut(s)	518
AloI	GAACNNNNNNTCC	2 cut(s)	165, 197
AluBI	AGCT	5 cut(s)	62, 200, 349, 491, 552
AluI	AGCT	5 cut(s)	62, 200, 349, 491, 552
Alw21I	GWGCWC	1 cut(s)	232
Alw26I	GTCTC	2 cut(s)	185, 324
Alw44I	GTGCAC	1 cut(s)	228
AlwI	GGATC	1 cut(s)	511
AoxI	GGCC	1 cut(s)	135
ApaLI	GTGCAC	1 cut(s)	228
ApeKI	GCWGC	6 cut(s)	276, 346, 349, 352, 477, 543
BaeGI	GKGCMC	1 cut(s)	232
BaeI	ACNNNNGTAYC	2 cut(s)	146, 179
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	6 cut(s)	263, 336, 358, 364, 489, 555
BccI	CCATC	1 cut(s)	278
BciT130I	CCWGG	1 cut(s)	520
BcoDI	GTCTC	2 cut(s)	185, 324
BfaI	CTAG	3 cut(s)	116, 390, 497
BfmI	CTRYAG	1 cut(s)	350
BfuAI	ACCTGC	2 cut(s)	11, 460
BglII	AGATCT	1 cut(s)	375
BisI	GCNGC	6 cut(s)	277, 347, 350, 353, 478, 544
BlsI	GCNGC	6 cut(s)	278, 348, 351, 354, 479, 545
Bme1390I	CCNGG	1 cut(s)	520
BmrFI	CCNGG	1 cut(s)	520
BmsI	GCATC	1 cut(s)	402
BsaI	GGTCTC	1 cut(s)	324
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bse1I	ACTGG	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	520
BseGI	GGATG	3 cut(s)	252, 289, 370
BseMII	CTCAG	1 cut(s)	167
BseNI	ACTGG	1 cut(s)	252
BseRI	GAGGAG	1 cut(s)	83
BseSI	GKGCMC	1 cut(s)	232
BseXI	GCAGC	6 cut(s)	263, 336, 358, 364, 489, 555
BsgI	GTGCAG	1 cut(s)	438
Bsh1236I	CGCG	1 cut(s)	58
BshFI	GGCC	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	232
BsmAI	GTCTC	2 cut(s)	185, 324
BsmI	GAATGC	1 cut(s)	564
BsnI	GGCC	1 cut(s)	137
Bso31I	GGTCTC	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp1407I	TGTACA	1 cut(s)	264
Bsp143I	GATC	6 cut(s)	46, 202, 219, 375, 422, 503
Bsp68I	TCGCGA	1 cut(s)	58
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	1 cut(s)	168
BspFNI	CGCG	1 cut(s)	58
BspMAI	CTGCAG	1 cut(s)	354
BspMI	ACCTGC	2 cut(s)	11, 460
BspPI	GGATC	1 cut(s)	511
BspTNI	GGTCTC	1 cut(s)	324
BsrGI	TGTACA	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	252
BssMI	GATC	6 cut(s)	46, 202, 219, 375, 422, 503
Bst2UI	CCWGG	1 cut(s)	520
BstAUI	TGTACA	1 cut(s)	264
BstC8I	GCNNGC	2 cut(s)	60, 357
BstDEI	CTNAG	1 cut(s)	176
BstF5I	GGATG	3 cut(s)	252, 289, 370
BstFNI	CGCG	1 cut(s)	58
BstKTI	GATC	6 cut(s)	49, 205, 222, 378, 425, 506
BstMAI	GTCTC	2 cut(s)	185, 324
BstMBI	GATC	6 cut(s)	46, 202, 219, 375, 422, 503
BstMWI	GCNNNNNNNGC	2 cut(s)	352, 549
BstNI	CCWGG	1 cut(s)	520
BstSCI	CCNGG	1 cut(s)	518
BstSFI	CTRYAG	1 cut(s)	350
BstSLI	GKGCMC	1 cut(s)	232
BstUI	CGCG	1 cut(s)	58
BstV1I	GCAGC	6 cut(s)	263, 336, 358, 364, 489, 555
BstX2I	RGATCY	1 cut(s)	375
BstYI	RGATCY	1 cut(s)	375
BsuRI	GGCC	1 cut(s)	137
BtsCI	GGATG	3 cut(s)	252, 289, 370
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	1 cut(s)	42
BtuMI	TCGCGA	1 cut(s)	58
BveI	ACCTGC	2 cut(s)	11, 460
Cac8I	GCNNGC	2 cut(s)	60, 357
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	4 cut(s)	191, 280, 409, 445
CviJI	RGCY	7 cut(s)	62, 137, 200, 349, 491, 546, 552
CviKI_1	RGCY	7 cut(s)	62, 137, 200, 349, 491, 546, 552
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	1 cut(s)	176
DpnI	GATC	6 cut(s)	48, 204, 221, 377, 424, 505
DpnII	GATC	6 cut(s)	46, 202, 219, 375, 422, 503
Eco31I	GGTCTC	1 cut(s)	324
EcoRII	CCWGG	1 cut(s)	518
FaeI	CATG	4 cut(s)	194, 283, 412, 448
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FatI	CATG	4 cut(s)	190, 279, 408, 444
FauNDI	CATATG	1 cut(s)	102
Fnu4HI	GCNGC	6 cut(s)	277, 347, 350, 353, 478, 544
FokI	GGATG	3 cut(s)	259, 296, 377
Fsp4HI	GCNGC	6 cut(s)	277, 347, 350, 353, 478, 544
FspBI	CTAG	3 cut(s)	116, 390, 497
GluI	GCNGC	6 cut(s)	277, 347, 350, 353, 478, 544
HaeIII	GGCC	1 cut(s)	137
Hin1II	CATG	4 cut(s)	194, 283, 412, 448
HindIII	AAGCTT	1 cut(s)	489
HinfI	GANTC	5 cut(s)	119, 141, 178, 434, 523
Hpy166II	GTNNAC	1 cut(s)	230
Hpy188I	TCNGA	3 cut(s)	79, 86, 503
Hpy188III	TCNNGA	7 cut(s)	57, 149, 184, 206, 323, 379, 507
Hpy8I	GTNNAC	1 cut(s)	230
HpyAV	CCTTC	2 cut(s)	218, 364
HpyCH4V	TGCA	8 cut(s)	35, 230, 279, 346, 352, 415, 455, 477
HpyF10VI	GCNNNNNNNGC	2 cut(s)	352, 549
HpyF3I	CTNAG	1 cut(s)	176
Hsp92II	CATG	4 cut(s)	194, 283, 412, 448
Kzo9I	GATC	6 cut(s)	46, 202, 219, 375, 422, 503
Lsp1109I	GCAGC	6 cut(s)	263, 336, 358, 364, 489, 555
LweI	GCATC	1 cut(s)	402
MaeI	CTAG	3 cut(s)	116, 390, 497
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	6 cut(s)	48, 204, 221, 377, 424, 505
MboI	GATC	6 cut(s)	46, 202, 219, 375, 422, 503
MboII	GAAGA	2 cut(s)	432, 575
MflI	RGATCY	1 cut(s)	375
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	2 cut(s)	308, 383
MlyI	GAGTC	2 cut(s)	128, 187
MmeI	TCCRAC	1 cut(s)	481
MnlI	CCTC	3 cut(s)	101, 104, 566
MseI	TTAA	3 cut(s)	14, 125, 165
MslI	CAYNNNNRTG	1 cut(s)	101
MspA1I	CMGCKG	1 cut(s)	349
MspR9I	CCNGG	1 cut(s)	520
Mva1269I	GAATGC	1 cut(s)	564
MvaI	CCWGG	1 cut(s)	520
MvnI	CGCG	1 cut(s)	58
MwoI	GCNNNNNNNGC	2 cut(s)	352, 549
NdeI	CATATG	1 cut(s)	102
NdeII	GATC	6 cut(s)	46, 202, 219, 375, 422, 503
NlaIII	CATG	4 cut(s)	194, 283, 412, 448
NmuCI	GTSAC	1 cut(s)	290
NruI	TCGCGA	1 cut(s)	58
PaqCI	CACCTGC	1 cut(s)	460
PcsI	WCGNNNNNNNCGW	1 cut(s)	55
PctI	GAATGC	1 cut(s)	564
PfeI	GAWTC	3 cut(s)	141, 434, 523
PkrI	GCNGC	6 cut(s)	278, 348, 351, 354, 479, 545
PleI	GAGTC	2 cut(s)	127, 186
PpsI	GAGTC	2 cut(s)	127, 186
Psp6I	CCWGG	1 cut(s)	518
PspGI	CCWGG	1 cut(s)	518
PstI	CTGCAG	1 cut(s)	354
PsuI	RGATCY	1 cut(s)	375
PvuII	CAGCTG	1 cut(s)	349
RruI	TCGCGA	1 cut(s)	58
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	3 cut(s)	14, 125, 165
SatI	GCNGC	6 cut(s)	277, 347, 350, 353, 478, 544
Sau3AI	GATC	6 cut(s)	46, 202, 219, 375, 422, 503
SchI	GAGTC	2 cut(s)	128, 187
ScrFI	CCNGG	1 cut(s)	520
SduI	GDGCHC	1 cut(s)	232
SfaNI	GCATC	1 cut(s)	402
SfcI	CTRYAG	1 cut(s)	350
SmiMI	CAYNNNNRTG	1 cut(s)	101
Sse9I	AATT	2 cut(s)	308, 383
SspMI	CTAG	3 cut(s)	116, 390, 497
StyD4I	CCNGG	1 cut(s)	518
TaqI	TCGA	2 cut(s)	222, 571
TasI	AATT	2 cut(s)	308, 383
TatI	WGTACW	1 cut(s)	264
TfiI	GAWTC	3 cut(s)	141, 434, 523
Tru1I	TTAA	3 cut(s)	14, 125, 165
Tru9I	TTAA	3 cut(s)	14, 125, 165
TscAI	CASTG	1 cut(s)	42
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	6 cut(s)	276, 346, 349, 352, 477, 543
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	5 cut(s)	119, 133, 186, 321, 557
TspRI	CASTG	1 cut(s)	42
VneI	GTGCAC	1 cut(s)	228
XspI	CTAG	3 cut(s)	116, 390, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.