Rroxscaffold_5G00362680

L-type lectin-domain containing receptor kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
43704911 .. 43706186
1276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00362680.1

Sequence Viewer

Length: 924 bp
ATGGTGATTCTGTTTCTCTCCCTTCGTTGTTGCCGGCCGGCGGCGGCTTTCACCGACGCTCGGACCTACAAGGTGAAACCCTACCAGTTCGGATCTTGTACAACCGGTCTTTCACCCTCCGGAACTCGATCTCGACTCTTCTTCTCCGGATACGTCGCCTCTTTCAACTCGTCCTTCCTCATTAACGTCTATTGTCTCAATGGCTCCGCCGTCCCCGGAGAGGGCATCGCCTTCATTATAGCCCCGGATTTGACCATCCCGGCAAACGGCGCAGGTCAATATCTCGGTTTGACCAACGCCACCACCGACGGTAACCCCACCAATCACTTGGTGGCAATTGAGCTCGACACTTTGAAGGAGAGCTTCGATCCGGACGCCAACCACATGGGGCTGAATATCAACTCGGTTAAGTCTAACAAGACGGTGCCACTTTCGGATTACGGAATCGAGATCGCGCCACCAGGCACGGAGTTTTATATGGTGTGGATCCAATACGACGGTGGGTCACATAATCTGTCGGTGTTCATGGCCAACCGTACCGATCGAACAAGGACGGGAAGGGAGCGTTTCTTCCACCGGGAGTTACAGCCAGCTCAACTACGTGTTGATGTGGAATCTAACGGTGGAGATTCGCCGGACGTGGAAGGTGGAGGGGACAACGATAAGGTGTGGAAGATAGCACTAGGGGGAGTTCGTTACCGAGAGCTTAAGAAAGCCACCAATAACTTCGACGACAAGCACAAACTAGGTCAAGGTGGGTTCGGGGTGGTATACCGAGCTGTGCTAGCTAAGGAGGATAACCTCGAAGTGGCGGTGAAGATGTTCTCAAGGGACGAGGTCAAGGGCGAGAGACGACTTTTGGCCGAGCTCACCATCATTAACCGCCTTCGCCACAAACACCTCGTCCGGTTACTCGGTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

307

Amino Acids

33.84

Weight (kDa)

8.27

Isoelectric Point (pI)

36.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 50 - 181 4.5e-35 Legume lectin domain
Pkinase PF00069 244 - 305 3.1e-09 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 246 - 306 4.7e-09 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000688)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 263
AccB1I GGYRCC 1 cut(s) 424
AccI GTMKAC 1 cut(s) 771
AccII CGCG 1 cut(s) 455
AccIII TCCGGA 3 cut(s) 119, 146, 370
AciI CCGC 5 cut(s) 41, 44, 207, 812, 883
AclWI GGATC 4 cut(s) 100, 362, 481, 494
AcoI YGGCCR 3 cut(s) 35, 528, 861
AcyI GRCGYC 1 cut(s) 375
AdeI CACNNNGTG 1 cut(s) 331
AfaI GTAC 2 cut(s) 100, 538
AfiI CCNNNNNNNGG 6 cut(s) 40, 60, 220, 221, 266, 808
AflII CTTAAG 1 cut(s) 707
AflIII ACRYGT 1 cut(s) 601
AgeI ACCGGT 1 cut(s) 104
AgsI TTSAA 2 cut(s) 166, 355
AhdI GACNNNNNGTC 1 cut(s) 502
AjiI CACGTC 1 cut(s) 640
AjnI CCWGG 1 cut(s) 460
AluBI AGCT 7 cut(s) 343, 363, 593, 706, 779, 788, 868
AluI AGCT 7 cut(s) 343, 363, 593, 706, 779, 788, 868
Alw21I GWGCWC 2 cut(s) 345, 870
Alw26I GTCTC 2 cut(s) 200, 844
AlwI GGATC 4 cut(s) 100, 362, 481, 494
Aor13HI TCCGGA 3 cut(s) 119, 146, 370
AoxI GGCC 3 cut(s) 35, 528, 861
ArsI GACNNNNNNTTYG 2 cut(s) 888, 920
AsiGI ACCGGT 1 cut(s) 104
Asp700I GAANNNNTTC 1 cut(s) 821
AspLEI GCGC 2 cut(s) 272, 457
AspS9I GGNCC 1 cut(s) 63
AsuC2I CCSGG 4 cut(s) 216, 245, 260, 578
AsuHPI GGTGA 6 cut(s) 16, 43, 85, 105, 826, 862
AsuNHI GCTAGC 1 cut(s) 784
AvaII GGWCC 1 cut(s) 63
BalI TGGCCA 1 cut(s) 530
BamHI GGATCC 1 cut(s) 486
BanI GGYRCC 1 cut(s) 424
BanII GRGCYC 2 cut(s) 345, 870
Bbv12I GWGCWC 2 cut(s) 345, 870
BccI CCATC 2 cut(s) 263, 881
BceAI ACGGC 2 cut(s) 194, 283
BciT130I CCWGG 1 cut(s) 462
BciVI GTATCC 1 cut(s) 143
BcnI CCSGG 4 cut(s) 216, 245, 260, 578
BcoDI GTCTC 2 cut(s) 200, 844
BfaI CTAG 3 cut(s) 683, 746, 785
BfrI CTTAAG 1 cut(s) 707
BfuAI ACCTGC 1 cut(s) 263
BfuI GTATCC 1 cut(s) 143
BisI GCNGC 2 cut(s) 42, 45
BlsI GCNGC 2 cut(s) 43, 46
Bme1390I CCNGG 5 cut(s) 216, 245, 260, 462, 578
Bme18I GGWCC 1 cut(s) 63
BmeRI GACNNNNNGTC 1 cut(s) 502
BmgBI CACGTC 1 cut(s) 640
BmgT120I GGNCC 1 cut(s) 63
BmiI GGNNCC 3 cut(s) 205, 426, 488
BmrFI CCNGG 5 cut(s) 216, 245, 260, 462, 578
BmsI GCATC 1 cut(s) 234
BmtI GCTAGC 1 cut(s) 788
Bpu10I CCTNAGC 1 cut(s) 789
BpuEI CTTGAG 1 cut(s) 811
BpuMI CCSGG 4 cut(s) 216, 245, 260, 578
BsaAI YACGTR 1 cut(s) 602
BsaHI GRCGYC 1 cut(s) 375
BsaJI CCNNGG 2 cut(s) 214, 243
BsaWI WCCGGW 5 cut(s) 104, 119, 146, 370, 906
Bsc4I CCNNNNNNNGG 6 cut(s) 40, 60, 220, 221, 266, 808
Bse118I RCCGGY 3 cut(s) 33, 37, 104
Bse1I ACTGG 1 cut(s) 85
BseAI TCCGGA 3 cut(s) 119, 146, 370
BseBI CCWGG 1 cut(s) 462
BseDI CCNNGG 2 cut(s) 214, 243
BseGI GGATG 1 cut(s) 255
BseLI CCNNNNNNNGG 6 cut(s) 40, 60, 220, 221, 266, 808
BseNI ACTGG 1 cut(s) 85
BseX3I CGGCCG 1 cut(s) 35
Bsh1236I CGCG 1 cut(s) 455
Bsh1285I CGRYCG 2 cut(s) 38, 544
BshFI GGCC 3 cut(s) 37, 530, 863
BshNI GGYRCC 1 cut(s) 424
BshTI ACCGGT 1 cut(s) 104
BsiEI CGRYCG 2 cut(s) 38, 544
BsiHKAI GWGCWC 2 cut(s) 345, 870
BslFI GGGAC 3 cut(s) 197, 668, 845
BslI CCNNNNNNNGG 6 cut(s) 40, 60, 220, 221, 266, 808
BsmAI GTCTC 2 cut(s) 200, 844
BsmBI CGTCTC 1 cut(s) 844
BsmFI GGGAC 3 cut(s) 197, 668, 845
BsnI GGCC 3 cut(s) 37, 530, 863
Bsp1286I GDGCHC 2 cut(s) 345, 870
Bsp13I TCCGGA 3 cut(s) 119, 146, 370
Bsp1407I TGTACA 1 cut(s) 98
Bsp143I GATC 6 cut(s) 92, 128, 367, 450, 486, 541
BspACI CCGC 5 cut(s) 41, 44, 207, 812, 883
BspANI GGCC 3 cut(s) 37, 530, 863
BspEI TCCGGA 3 cut(s) 119, 146, 370
BspFNI CGCG 1 cut(s) 455
BspLI GGNNCC 3 cut(s) 205, 426, 488
BspMI ACCTGC 1 cut(s) 263
BspOI GCTAGC 1 cut(s) 788
BspPI GGATC 4 cut(s) 100, 362, 481, 494
BspT107I GGYRCC 1 cut(s) 424
BspTI CTTAAG 1 cut(s) 707
BsrFI RCCGGY 3 cut(s) 33, 37, 104
BsrGI TGTACA 1 cut(s) 98
BsrI ACTGG 1 cut(s) 85
BssAI RCCGGY 3 cut(s) 33, 37, 104
BssECI CCNNGG 2 cut(s) 214, 243
BssMI GATC 6 cut(s) 92, 128, 367, 450, 486, 541
BssNAI GTATAC 1 cut(s) 772
BssNI GRCGYC 1 cut(s) 375
Bst1107I GTATAC 1 cut(s) 772
Bst2UI CCWGG 1 cut(s) 462
Bst4CI ACNGT 5 cut(s) 311, 424, 500, 536, 623
Bst6I CTCTTC 1 cut(s) 143
BstACI GRCGYC 1 cut(s) 375
BstAFI CTTAAG 1 cut(s) 707
BstAUI TGTACA 1 cut(s) 98
BstBAI YACGTR 1 cut(s) 602
BstC8I GCNNGC 4 cut(s) 35, 39, 591, 786
BstDEI CTNAG 1 cut(s) 789
BstEII GGTNACC 1 cut(s) 311
BstF5I GGATG 1 cut(s) 255
BstFNI CGCG 1 cut(s) 455
BstHHI GCGC 2 cut(s) 272, 457
BstKTI GATC 6 cut(s) 95, 131, 370, 453, 489, 544
BstMAI GTCTC 2 cut(s) 200, 844
BstMBI GATC 6 cut(s) 92, 128, 367, 450, 486, 541
BstMCI CGRYCG 2 cut(s) 38, 544
BstMWI GCNNNNNNNGC 2 cut(s) 269, 785
BstNI CCWGG 1 cut(s) 462
BstPI GGTNACC 1 cut(s) 311
BstSCI CCNGG 5 cut(s) 214, 243, 258, 460, 576
BstUI CGCG 1 cut(s) 455
BstX2I RGATCY 2 cut(s) 92, 486
BstXI CCANNNNNNTGG 2 cut(s) 328, 385
BstYI RGATCY 2 cut(s) 92, 486
BstZ17I GTATAC 1 cut(s) 772
BstZI CGGCCG 1 cut(s) 35
BsuI GTATCC 1 cut(s) 143
BsuRI GGCC 3 cut(s) 37, 530, 863
BtgZI GCGATG 1 cut(s) 211
BtrI CACGTC 1 cut(s) 640
BtsCI GGATG 1 cut(s) 255
BveI ACCTGC 1 cut(s) 263
Cac8I GCNNGC 4 cut(s) 35, 39, 591, 786
CfoI GCGC 2 cut(s) 272, 457
Cfr10I RCCGGY 3 cut(s) 33, 37, 104
Cfr13I GGNCC 1 cut(s) 63
CseI GACGC 2 cut(s) 65, 383
Csp6I GTAC 2 cut(s) 99, 537
CspAI ACCGGT 1 cut(s) 104
CviAII CATG 2 cut(s) 385, 526
CviQI GTAC 2 cut(s) 99, 537
DdeI CTNAG 1 cut(s) 789
DpnI GATC 6 cut(s) 94, 130, 369, 452, 488, 543
DpnII GATC 6 cut(s) 92, 128, 367, 450, 486, 541
DraIII CACNNNGTG 1 cut(s) 331
DriI GACNNNNNGTC 1 cut(s) 502
EaeI YGGCCR 3 cut(s) 35, 528, 861
EagI CGGCCG 1 cut(s) 35
Eam1104I CTCTTC 1 cut(s) 143
Eam1105I GACNNNNNGTC 1 cut(s) 502
EarI CTCTTC 1 cut(s) 143
EciI GGCGGA 1 cut(s) 196
Ecl136II GAGCTC 2 cut(s) 343, 868
EclXI CGGCCG 1 cut(s) 35
Eco24I GRGCYC 2 cut(s) 345, 870
Eco47I GGWCC 1 cut(s) 63
Eco52I CGGCCG 1 cut(s) 35
Eco53kI GAGCTC 2 cut(s) 343, 868
Eco91I GGTNACC 1 cut(s) 311
EcoICRI GAGCTC 2 cut(s) 343, 868
EcoO65I GGTNACC 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 460
EcoT38I GRGCYC 2 cut(s) 345, 870
Esp3I CGTCTC 1 cut(s) 844
FaeI CATG 2 cut(s) 388, 529
FaiI YATR 7 cut(s) 239, 386, 477, 479, 510, 527, 772
FalI AAGNNNNNCTT 2 cut(s) 347, 379
FaqI GGGAC 3 cut(s) 197, 668, 845
FatI CATG 2 cut(s) 384, 525
FblI GTMKAC 1 cut(s) 771
Fnu4HI GCNGC 2 cut(s) 42, 45
FokI GGATG 1 cut(s) 242
FriOI GRGCYC 2 cut(s) 345, 870
Fsp4HI GCNGC 2 cut(s) 42, 45
FspBI CTAG 3 cut(s) 683, 746, 785
GlaI GCGC 2 cut(s) 271, 456
GluI GCNGC 2 cut(s) 42, 45
HaeIII GGCC 3 cut(s) 37, 530, 863
HgaI GACGC 2 cut(s) 65, 383
HhaI GCGC 2 cut(s) 272, 457
Hin1I GRCGYC 1 cut(s) 375
Hin1II CATG 2 cut(s) 388, 529
Hin6I GCGC 2 cut(s) 270, 455
HinP1I GCGC 2 cut(s) 270, 455
HinfI GANTC 5 cut(s) 7, 135, 444, 614, 629
HphI GGTGA 6 cut(s) 16, 43, 85, 105, 826, 862
Hpy166II GTNNAC 1 cut(s) 772
Hpy188I TCNGA 3 cut(s) 63, 92, 436
Hpy188III TCNNGA 5 cut(s) 120, 132, 147, 371, 448
Hpy8I GTNNAC 1 cut(s) 772
Hpy99I CGWCG 5 cut(s) 59, 158, 311, 500, 734
HpyAV CCTTC 7 cut(s) 32, 184, 241, 349, 552, 638, 896
HpyCH4III ACNGT 5 cut(s) 311, 424, 500, 536, 623
HpyCH4IV ACGT 4 cut(s) 153, 186, 601, 639
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 785
HpyF3I CTNAG 1 cut(s) 789
HpySE526I ACGT 4 cut(s) 153, 186, 601, 639
Hsp92I GRCGYC 1 cut(s) 375
Hsp92II CATG 2 cut(s) 388, 529
HspAI GCGC 2 cut(s) 270, 455
Kpn2I TCCGGA 3 cut(s) 119, 146, 370
KroI GCCGGC 2 cut(s) 33, 37
KroNI GCCGGC 2 cut(s) 35, 39
Kzo9I GATC 6 cut(s) 92, 128, 367, 450, 486, 541
LmnI GCTCC 2 cut(s) 209, 562
LweI GCATC 1 cut(s) 234
MaeI CTAG 3 cut(s) 683, 746, 785
MaeII ACGT 4 cut(s) 153, 186, 601, 639
MaeIII GTNAC 6 cut(s) 311, 504, 582, 695, 909, 917
MalI GATC 6 cut(s) 94, 130, 369, 452, 488, 543
MboI GATC 6 cut(s) 92, 128, 367, 450, 486, 541
MboII GAAGA 5 cut(s) 130, 133, 562, 685, 829
MfeI CAATTG 1 cut(s) 336
MflI RGATCY 2 cut(s) 92, 486
MhlI GDGCHC 2 cut(s) 345, 870
MlsI TGGCCA 1 cut(s) 530
MluCI AATT 1 cut(s) 336
MluNI TGGCCA 1 cut(s) 530
MlyI GAGTC 1 cut(s) 129
MnlI CCTC 9 cut(s) 127, 169, 188, 214, 644, 787, 812, 829, 911
Mox20I TGGCCA 1 cut(s) 530
MroI TCCGGA 3 cut(s) 119, 146, 370
MroNI GCCGGC 2 cut(s) 33, 37
MroXI GAANNNNTTC 1 cut(s) 821
MscI TGGCCA 1 cut(s) 530
MseI TTAA 4 cut(s) 183, 408, 708, 879
Msp20I TGGCCA 1 cut(s) 530
MspCI CTTAAG 1 cut(s) 707
MspR9I CCNGG 5 cut(s) 216, 245, 260, 462, 578
MunI CAATTG 1 cut(s) 336
MvaI CCWGG 1 cut(s) 462
MvnI CGCG 1 cut(s) 455
MwoI GCNNNNNNNGC 2 cut(s) 269, 785
NaeI GCCGGC 2 cut(s) 35, 39
NciI CCSGG 4 cut(s) 216, 245, 260, 578
NdeII GATC 6 cut(s) 92, 128, 367, 450, 486, 541
NgoMIV GCCGGC 2 cut(s) 33, 37
NheI GCTAGC 1 cut(s) 784
NlaIII CATG 2 cut(s) 388, 529
NlaIV GGNNCC 3 cut(s) 205, 426, 488
NmeAIII GCCGAG 1 cut(s) 889
NmuCI GTSAC 2 cut(s) 504, 917
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PdiI GCCGGC 2 cut(s) 35, 39
PdmI GAANNNNTTC 1 cut(s) 821
PfeI GAWTC 4 cut(s) 7, 444, 614, 629
PflFI GACNNNGTC 1 cut(s) 836
PinAI ACCGGT 1 cut(s) 104
PkrI GCNGC 2 cut(s) 43, 46
Ple19I CGATCG 1 cut(s) 544
PleI GAGTC 1 cut(s) 129
PpsI GAGTC 1 cut(s) 129
Ppu21I YACGTR 1 cut(s) 602
Psp124BI GAGCTC 2 cut(s) 345, 870
Psp6I CCWGG 1 cut(s) 460
PspEI GGTNACC 1 cut(s) 311
PspGI CCWGG 1 cut(s) 460
PspN4I GGNNCC 3 cut(s) 205, 426, 488
PspPI GGNCC 1 cut(s) 63
PsuI RGATCY 2 cut(s) 92, 486
PsyI GACNNNGTC 1 cut(s) 836
PvuI CGATCG 1 cut(s) 544
RsaI GTAC 2 cut(s) 100, 538
RsaNI GTAC 2 cut(s) 99, 537
SacI GAGCTC 2 cut(s) 345, 870
SaqAI TTAA 4 cut(s) 183, 408, 708, 879
SatI GCNGC 2 cut(s) 42, 45
Sau3AI GATC 6 cut(s) 92, 128, 367, 450, 486, 541
Sau96I GGNCC 1 cut(s) 63
SchI GAGTC 1 cut(s) 129
ScrFI CCNGG 5 cut(s) 216, 245, 260, 462, 578
SduI GDGCHC 2 cut(s) 345, 870
SfaNI GCATC 1 cut(s) 234
SinI GGWCC 1 cut(s) 63
SmlI CTYRAG 2 cut(s) 707, 826
SmoI CTYRAG 2 cut(s) 707, 826
Sse9I AATT 1 cut(s) 336
SsiI CCGC 5 cut(s) 41, 44, 207, 812, 883
SspMI CTAG 3 cut(s) 683, 746, 785
SstI GAGCTC 2 cut(s) 345, 870
StyD4I CCNGG 5 cut(s) 214, 243, 258, 460, 576
TaaI ACNGT 5 cut(s) 311, 424, 500, 536, 623
TaiI ACGT 4 cut(s) 156, 189, 604, 642
TaqI TCGA 8 cut(s) 127, 133, 345, 366, 447, 544, 729, 804
TasI AATT 1 cut(s) 336
TatI WGTACW 1 cut(s) 98
TauI GCSGC 2 cut(s) 44, 47
TfiI GAWTC 4 cut(s) 7, 444, 614, 629
Tru1I TTAA 4 cut(s) 183, 408, 708, 879
Tru9I TTAA 4 cut(s) 183, 408, 708, 879
TseFI GTSAC 2 cut(s) 504, 917
Tsp45I GTSAC 2 cut(s) 504, 917
TspDTI ATGAA 2 cut(s) 223, 514
TspGWI ACGGA 2 cut(s) 456, 482
Tth111I GACNNNGTC 1 cut(s) 836
Vha464I CTTAAG 1 cut(s) 707
VpaK11BI GGWCC 1 cut(s) 63
XcmI CCANNNNNNNNNTGG 3 cut(s) 325, 328, 497
XmiI GTMKAC 1 cut(s) 771
XmnI GAANNNNTTC 1 cut(s) 821
XspI CTAG 3 cut(s) 683, 746, 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.