Rmu_co8287847.1_g000001

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8287847.1
OG0000688
Physical Location & Seq
Reverse (-)
1 .. 857
857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8287847.1_g000001.1.cds

Sequence Viewer

Length: 619 bp
atggccaaccagaccgatcagaacaaggacgcgaaaggagcgtttgttaatatccggcctcggcccaccagcccaattctaaccgccaacctcaacctcaaggacattgtcaaccaaaagtcctacttcggatttgccgcgtccaccggaagtaacatccagctcaactgcgtgttgatgtggaatctaacggtggagattctgccggacttggaaggtggaggggacaacgataaggtgttgaagatagcactaggcgtgggtgccgggttggttttggtcctattgtgtttattcggggtgggttgttatgtgtacaaaaggcgaaaggctaaggcttcggaccctaacattttgggcgcgcttaagagccttcccggaacaccaagggagttcagttaccgagagcttaagaaagccaccaacaacttcgacgacaaccacaaactaggccaaggtgggttcggggtggtataccgagctgtgctagctcaggaggataacctcgaagtggcagtgaagatgttctcaagggacgaggtcaagggcagagacgactttttggccgagctcaccatcattaaccgccttcgccacaaacacctcgtccggttactcg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

206

Amino Acids

22.73

Weight (kDa)

9.36

Isoelectric Point (pI)

30.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000688)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09820 FvH4_2g17160 FvH4_2g17160
malus_domestica MD02G1107100.v1.1 MD02G1107300.v1.1 MD05G1144900.v1.1 MD10G1144700.v1.1 MD15G1226500.v1.1
prunus_persica Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.8G183000_v2.0.a1
pyrus_communis pycom05g14000 pycom10g12440 pycom15g20140
rosa_chinensis RchiOBHm_Chr2g0096621 RchiOBHm_Chr6g0281601 RchiOBHm_Chr6g0281651 RchiOBHm_Chr7g0212121
rosa_laevigata RLG00000002926 RLG00000002927 RLG00000002933 RLG00000008638 RLG00000012954 RLG00000012955 RLG00000016656
rosa_multiflora Rmu_co8091766.1_g000001 Rmu_co8287847.1_g000001 Rmu_co8297221.1_g000001 Rmu_co8485327.1_g000001 Rmu_co8512767.1_g000001 Rmu_sc0002316.1_g000041 Rmu_sc0003565.1_g000009 Rmu_sc0014556.1_g000004 Rmu_sc0027573.1_g000001 Rmu_sc0030028.1_g000001
rosa_roxburghii Rroxscaffold_1G00026540 Rroxscaffold_2G00145470 Rroxscaffold_3G00247100 Rroxscaffold_3G00247110 Rroxscaffold_3G00247120 Rroxscaffold_5G00362680 Rroxscaffold_5G00362710 Rroxscaffold_7G00186950
rosa_rugosa Rorug02G0059000 Rorug02G0059100 Rorug06G0142300 Rorug07G0131000 Rorug07G0131100
rosa_samantha Rh1DG155700 Rh2AG106500 Rh2AG171500 Rh2BG108800 Rh2BG178900 Rh2CG110600 Rh2CG176400 Rh2DG110100 Rh2DG177600 Rh4BG120600 Rh6BG258300 Rh6CG257100 Rh6DG249200 Rh6DG249300 Rh7AG264100 Rh7AG264200 Rh7BG257800 Rh7BG257900 Rh7BG258000 Rh7BG258100 Rh7CG280600 Rh7CG280700 Rh7DG270600
rosa_wichuraiana Rw2G008240 Rw6G022110 Rw7G022540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 263
AccI GTMKAC 1 cut(s) 474
AccII CGCG 3 cut(s) 32, 140, 362
AciI CCGC 3 cut(s) 84, 138, 586
AcoI YGGCCR 2 cut(s) 3, 564
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 1 cut(s) 511
AflII CTTAAG 2 cut(s) 365, 410
AgsI TTSAA 1 cut(s) 244
AluBI AGCT 5 cut(s) 163, 409, 482, 491, 571
AluI AGCT 5 cut(s) 163, 409, 482, 491, 571
Alw21I GWGCWC 1 cut(s) 573
Alw26I GTCTC 1 cut(s) 546
AoxI GGCC 5 cut(s) 3, 56, 62, 451, 564
ArsI GACNNNNNNTTYG 1 cut(s) 591
Asp700I GAANNNNTTC 1 cut(s) 524
AspLEI GCGC 2 cut(s) 362, 364
AspS9I GGNCC 3 cut(s) 63, 280, 343
AsuC2I CCSGG 2 cut(s) 268, 378
AsuHPI GGTGA 1 cut(s) 565
AsuNHI GCTAGC 1 cut(s) 487
AvaII GGWCC 2 cut(s) 280, 343
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 573
Bbv12I GWGCWC 1 cut(s) 573
BccI CCATC 1 cut(s) 584
BcnI CCSGG 2 cut(s) 268, 378
BcoDI GTCTC 1 cut(s) 546
BfaI CTAG 3 cut(s) 254, 449, 488
BfrI CTTAAG 2 cut(s) 365, 410
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
Bme1390I CCNGG 2 cut(s) 268, 378
Bme18I GGWCC 2 cut(s) 280, 343
BmgT120I GGNCC 3 cut(s) 63, 280, 343
BmiI GGNNCC 2 cut(s) 265, 345
BmrFI CCNGG 2 cut(s) 268, 378
BmtI GCTAGC 1 cut(s) 491
Bpu10I CCTNAGC 2 cut(s) 333, 492
BpuEI CTTGAG 2 cut(s) 83, 514
BpuMI CCSGG 2 cut(s) 268, 378
BsaJI CCNNGG 3 cut(s) 59, 386, 454
BsaWI WCCGGW 2 cut(s) 146, 609
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bsc4I CCNNNNNNNGG 1 cut(s) 511
BseDI CCNNGG 3 cut(s) 59, 386, 454
BseGI GGATG 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 511
BseMII CTCAG 1 cut(s) 506
BsePI GCGCGC 1 cut(s) 360
Bsh1236I CGCG 3 cut(s) 32, 140, 362
BshFI GGCC 5 cut(s) 5, 58, 64, 453, 566
BshNI GGYRCC 1 cut(s) 263
BsiHKAI GWGCWC 1 cut(s) 573
BsiSI CCGG 6 cut(s) 55, 147, 206, 267, 378, 610
BslFI GGGAC 2 cut(s) 239, 548
BslI CCNNNNNNNGG 1 cut(s) 511
BsmAI GTCTC 1 cut(s) 546
BsmBI CGTCTC 1 cut(s) 546
BsmFI GGGAC 2 cut(s) 239, 548
BsnI GGCC 5 cut(s) 5, 58, 64, 453, 566
Bsp1286I GDGCHC 1 cut(s) 573
Bsp1407I TGTACA 1 cut(s) 315
Bsp143I GATC 1 cut(s) 16
BspACI CCGC 3 cut(s) 84, 138, 586
BspANI GGCC 5 cut(s) 5, 58, 64, 453, 566
BspCNI CTCAG 1 cut(s) 505
BspFNI CGCG 3 cut(s) 32, 140, 362
BspLI GGNNCC 2 cut(s) 265, 345
BspOI GCTAGC 1 cut(s) 491
BspT107I GGYRCC 1 cut(s) 263
BspTI CTTAAG 2 cut(s) 365, 410
BsrGI TGTACA 1 cut(s) 315
BssECI CCNNGG 3 cut(s) 59, 386, 454
BssHII GCGCGC 1 cut(s) 360
BssMI GATC 1 cut(s) 16
BssNAI GTATAC 1 cut(s) 475
BssT1I CCWWGG 2 cut(s) 386, 454
Bst1107I GTATAC 1 cut(s) 475
Bst4CI ACNGT 1 cut(s) 193
BstAFI CTTAAG 2 cut(s) 365, 410
BstAUI TGTACA 1 cut(s) 315
BstC8I GCNNGC 2 cut(s) 362, 489
BstDEI CTNAG 2 cut(s) 333, 492
BstF5I GGATG 1 cut(s) 156
BstFNI CGCG 3 cut(s) 32, 140, 362
BstHHI GCGC 2 cut(s) 362, 364
BstKTI GATC 1 cut(s) 19
BstMAI GTCTC 1 cut(s) 546
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 2 cut(s) 38, 488
BstSCI CCNGG 2 cut(s) 266, 376
BstUI CGCG 3 cut(s) 32, 140, 362
BstZ17I GTATAC 1 cut(s) 475
BsuRI GGCC 5 cut(s) 5, 58, 64, 453, 566
BtsCI GGATG 1 cut(s) 156
BtsI GCAGTG 1 cut(s) 522
BtsIMutI CAGTG 1 cut(s) 522
Cac8I GCNNGC 2 cut(s) 362, 489
CfoI GCGC 2 cut(s) 362, 364
Cfr13I GGNCC 3 cut(s) 63, 280, 343
CseI GACGC 2 cut(s) 38, 129
Csp6I GTAC 1 cut(s) 316
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 2 cut(s) 333, 492
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
EaeI YGGCCR 2 cut(s) 3, 564
Ecl136II GAGCTC 1 cut(s) 571
Eco130I CCWWGG 2 cut(s) 386, 454
Eco24I GRGCYC 1 cut(s) 573
Eco47I GGWCC 2 cut(s) 280, 343
Eco53kI GAGCTC 1 cut(s) 571
EcoICRI GAGCTC 1 cut(s) 571
EcoT14I CCWWGG 2 cut(s) 386, 454
EcoT38I GRGCYC 1 cut(s) 573
ErhI CCWWGG 2 cut(s) 386, 454
Esp3I CGTCTC 1 cut(s) 546
FaiI YATR 2 cut(s) 312, 475
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FaqI GGGAC 2 cut(s) 239, 548
FblI GTMKAC 1 cut(s) 474
Fnu4HI GCNGC 1 cut(s) 138
FokI GGATG 1 cut(s) 143
FriOI GRGCYC 1 cut(s) 573
Fsp4HI GCNGC 1 cut(s) 138
FspBI CTAG 3 cut(s) 254, 449, 488
GlaI GCGC 2 cut(s) 361, 363
GluI GCNGC 1 cut(s) 138
HaeIII GGCC 5 cut(s) 5, 58, 64, 453, 566
HapII CCGG 6 cut(s) 55, 147, 206, 267, 378, 610
HgaI GACGC 2 cut(s) 38, 129
HhaI GCGC 2 cut(s) 362, 364
Hin6I GCGC 2 cut(s) 360, 362
HinP1I GCGC 2 cut(s) 360, 362
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 2 cut(s) 184, 199
HpaII CCGG 6 cut(s) 55, 147, 206, 267, 378, 610
HphI GGTGA 1 cut(s) 565
Hpy166II GTNNAC 4 cut(s) 112, 144, 316, 475
Hpy188I TCNGA 3 cut(s) 21, 131, 343
Hpy188III TCNNGA 1 cut(s) 494
Hpy8I GTNNAC 4 cut(s) 112, 144, 316, 475
Hpy99I CGWCG 1 cut(s) 437
HpyAV CCTTC 3 cut(s) 209, 383, 599
HpyCH4III ACNGT 1 cut(s) 193
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 488
HpyF3I CTNAG 2 cut(s) 333, 492
HspAI GCGC 2 cut(s) 360, 362
Kzo9I GATC 1 cut(s) 16
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 9 cut(s) 23, 68, 82, 160, 173, 219, 280, 391, 479
MaeI CTAG 3 cut(s) 254, 449, 488
MaeIII GTNAC 3 cut(s) 152, 398, 612
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 2 cut(s) 256, 532
MhlI GDGCHC 1 cut(s) 573
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 75
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 8 cut(s) 69, 101, 107, 215, 490, 515, 532, 614
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 524
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 48, 366, 411, 582
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 2 cut(s) 365, 410
MspI CCGG 6 cut(s) 55, 147, 206, 267, 378, 610
MspR9I CCNGG 2 cut(s) 268, 378
MvnI CGCG 3 cut(s) 32, 140, 362
MwoI GCNNNNNNNGC 2 cut(s) 38, 488
NciI CCSGG 2 cut(s) 268, 378
NdeII GATC 1 cut(s) 16
NheI GCTAGC 1 cut(s) 487
NlaIV GGNNCC 2 cut(s) 265, 345
NmeAIII GCCGAG 2 cut(s) 40, 592
PauI GCGCGC 1 cut(s) 360
PdmI GAANNNNTTC 1 cut(s) 524
PfeI GAWTC 2 cut(s) 184, 199
PflFI GACNNNGTC 2 cut(s) 107, 539
PfoI TCCNGGA 1 cut(s) 376
PkrI GCNGC 1 cut(s) 139
Psp124BI GAGCTC 1 cut(s) 573
PspN4I GGNNCC 2 cut(s) 265, 345
PspPI GGNCC 3 cut(s) 63, 280, 343
PsyI GACNNNGTC 2 cut(s) 107, 539
PteI GCGCGC 1 cut(s) 360
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
SacI GAGCTC 1 cut(s) 573
SaqAI TTAA 4 cut(s) 48, 366, 411, 582
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 1 cut(s) 16
Sau96I GGNCC 3 cut(s) 63, 280, 343
ScrFI CCNGG 2 cut(s) 268, 378
SduI GDGCHC 1 cut(s) 573
SinI GGWCC 2 cut(s) 280, 343
SmlI CTYRAG 4 cut(s) 98, 365, 410, 529
SmoI CTYRAG 4 cut(s) 98, 365, 410, 529
Sse9I AATT 1 cut(s) 75
SsiI CCGC 3 cut(s) 84, 138, 586
SspMI CTAG 3 cut(s) 254, 449, 488
SstI GAGCTC 1 cut(s) 573
StyD4I CCNGG 2 cut(s) 266, 376
StyI CCWWGG 2 cut(s) 386, 454
TaaI ACNGT 1 cut(s) 193
TaqI TCGA 2 cut(s) 432, 507
TaqII GACCGA 1 cut(s) 29
TasI AATT 1 cut(s) 75
TatI WGTACW 1 cut(s) 315
TauI GCSGC 1 cut(s) 140
TfiI GAWTC 2 cut(s) 184, 199
Tru1I TTAA 4 cut(s) 48, 366, 411, 582
Tru9I TTAA 4 cut(s) 48, 366, 411, 582
TscAI CASTG 1 cut(s) 522
TspRI CASTG 1 cut(s) 522
Tth111I GACNNNGTC 2 cut(s) 107, 539
Vha464I CTTAAG 2 cut(s) 365, 410
VpaK11BI GGWCC 2 cut(s) 280, 343
XmiI GTMKAC 1 cut(s) 474
XmnI GAANNNNTTC 1 cut(s) 524
XspI CTAG 3 cut(s) 254, 449, 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.