Rh6BG258300

L-type lectin-domain containing receptor kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
47180387 .. 47181403
1017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG258300.1

Sequence Viewer

Length: 1017 bp
ATGTATGACAAACCTTATAGACTCTGGTCATCTGACAATGAAGACGATGATGGTGTTGCCTCCTTCAACTCGACTTTCGTCATGAACATCTATCGTGAGAAAGACTGGATTGCTGGTGAGGGGTTTGCTTTTCTTATAGCGTCGGATTTGAACATGCCTGAGCAAAGCTATGGGCAGTGGCTAGGCCTCACCAATGCCGCCACTGATGGTAATGCTACAAACCACATGGTTGCCATAGAATTCGACACAAGAAAGCAAGATTTCGACCCCGATGACAACCATATAGGCCTCAACATCAACTCTGTAAGATCAAATAAGACTGTTTCTCTTGAGCCTTTCGACATTGAGATATCACCGGAGTTAGGCACCAACTACACCGTGTGGGTGCAATACAATGGCAGCTCAAAAGTCATGGCTAAGCGCATCATAAACATCCCACCAGTAAGGCCGGAGACACCGCTTATGAGGGAGCCAATAAACTTGAAACAATATCTAAAACAAGACTCCTACTTTGGATTTTCTGGTTCCACAGGTAGCCAGGCTAAACAGCTAAACTGTGTTTTGGAATGGAATCTAGTGGTTCATGAATTCAAGACCAGAAAGGATATGACTTTGTTGAAGATCGGTGTGCCAGCATTGGTTTTGTTAGCAGTATTTGGTGTTATTTTGGGAGTTGGGTATGTCAAGAAGAGGAAAAGAACCAGTCTTGAGGAGTCCATTGTGCTCGGGACACTGAAGAGGTTGCCAGGGATGCCGAGGGAGTTCAAGTACAAAGAGCTCAAGGATGCAACTAATAATTTCCATGCGAGTATGATCCTGGGACAAGGTGGTTTTGGCGTTGTTTACAGAGGGACTCTGCGTGATTTTGATGATGCAAATGCTACTAATGAGTCTGCAGAAATTGCTGTCAAGCAATTCTCAAGAGATAACATCAAAGGCAAAGATGATTTCATGGCAGAACTAACCATTATTCACCGCCTTCGCCACAAAAATCTTGTCCGGTTAGTAGGTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

338

Amino Acids

38.22

Weight (kDa)

6.62

Isoelectric Point (pI)

42.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 1 - 203 4.1e-56 Legume lectin domain
Pkinase PF00069 268 - 337 3.4e-06 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 271 - 338 1e-09 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000688)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 365
AciI CCGC 3 cut(s) 198, 458, 976
AclWI GGATC 1 cut(s) 808
AcsI RAATTY 2 cut(s) 239, 587
AcuI CTGAAG 1 cut(s) 755
AdeI CACNNNGTG 1 cut(s) 381
AfaI GTAC 1 cut(s) 770
AfiI CCNNNNNNNGG 1 cut(s) 362
AgsI TTSAA 6 cut(s) 67, 151, 484, 592, 619, 766
AjnI CCWGG 3 cut(s) 537, 745, 816
AluBI AGCT 4 cut(s) 168, 402, 550, 778
AluI AGCT 4 cut(s) 168, 402, 550, 778
Alw21I GWGCWC 2 cut(s) 726, 780
Alw26I GTCTC 1 cut(s) 446
AlwI GGATC 1 cut(s) 808
Ama87I CYCGRG 1 cut(s) 725
AoxI GGCC 3 cut(s) 184, 286, 446
ApeKI GCWGC 1 cut(s) 399
ApoI RAATTY 2 cut(s) 239, 587
ArsI GACNNNNNNTTYG 4 cut(s) 494, 526, 981, 1013
AspLEI GCGC 1 cut(s) 423
AsuHPI GGTGA 4 cut(s) 128, 181, 345, 965
AvaI CYCGRG 1 cut(s) 725
BanI GGYRCC 1 cut(s) 365
BanII GRGCYC 1 cut(s) 780
BbsI GAAGAC 1 cut(s) 48
Bbv12I GWGCWC 2 cut(s) 726, 780
BbvI GCAGC 1 cut(s) 411
BccI CCATC 2 cut(s) 44, 200
BciT130I CCWGG 3 cut(s) 539, 747, 818
BcoDI GTCTC 1 cut(s) 446
BfaI CTAG 2 cut(s) 182, 575
BfmI CTRYAG 1 cut(s) 894
BisI GCNGC 2 cut(s) 198, 400
BlpI GCTNAGC 1 cut(s) 417
BlsI GCNGC 2 cut(s) 199, 401
Bme1390I CCNGG 3 cut(s) 539, 747, 818
BmeT110I CYCGRG 1 cut(s) 725
BmiI GGNNCC 3 cut(s) 367, 471, 526
BmrFI CCNGG 3 cut(s) 539, 747, 818
BmsI GCATC 4 cut(s) 432, 741, 775, 862
BoxI GACNNNNGTC 2 cut(s) 25, 77
BpiI GAAGAC 1 cut(s) 48
Bpu10I CCTNAGC 1 cut(s) 159
Bpu1102I GCTNAGC 1 cut(s) 417
BpuEI CTTGAG 4 cut(s) 350, 728, 764, 904
BsaJI CCNNGG 3 cut(s) 746, 755, 817
BsaWI WCCGGW 2 cut(s) 355, 999
BsaXI ACNNNNNCTCC 2 cut(s) 752, 782
Bsc4I CCNNNNNNNGG 1 cut(s) 362
Bse1I ACTGG 3 cut(s) 110, 440, 702
BseBI CCWGG 3 cut(s) 539, 747, 818
BseDI CCNNGG 3 cut(s) 746, 755, 817
BseGI GGATG 3 cut(s) 432, 756, 790
BseLI CCNNNNNNNGG 1 cut(s) 362
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 3 cut(s) 110, 440, 702
BseRI GAGGAG 1 cut(s) 725
BseXI GCAGC 1 cut(s) 411
BshFI GGCC 3 cut(s) 186, 288, 448
BshNI GGYRCC 1 cut(s) 365
BsiHKAI GWGCWC 2 cut(s) 726, 780
BsiHKCI CYCGRG 1 cut(s) 725
BsiSI CCGG 3 cut(s) 356, 449, 1000
BslFI GGGAC 3 cut(s) 742, 834, 865
BslI CCNNNNNNNGG 1 cut(s) 362
BsmAI GTCTC 1 cut(s) 446
BsmFI GGGAC 3 cut(s) 742, 834, 865
BsnI GGCC 3 cut(s) 186, 288, 448
BsoBI CYCGRG 1 cut(s) 725
Bsp1286I GDGCHC 2 cut(s) 726, 780
Bsp143I GATC 3 cut(s) 308, 621, 813
Bsp1720I GCTNAGC 1 cut(s) 417
BspACI CCGC 3 cut(s) 198, 458, 976
BspANI GGCC 3 cut(s) 186, 288, 448
BspCNI CTCAG 1 cut(s) 151
BspHI TCATGA 2 cut(s) 81, 583
BspLI GGNNCC 3 cut(s) 367, 471, 526
BspMAI CTGCAG 1 cut(s) 898
BspPI GGATC 1 cut(s) 808
BspT107I GGYRCC 1 cut(s) 365
BsrI ACTGG 3 cut(s) 110, 440, 702
BssECI CCNNGG 3 cut(s) 746, 755, 817
BssMI GATC 3 cut(s) 308, 621, 813
Bst2UI CCWGG 3 cut(s) 539, 747, 818
Bst4CI ACNGT 3 cut(s) 322, 379, 557
Bst6I CTCTTC 2 cut(s) 683, 731
BstAPI GCANNNNNTGC 1 cut(s) 902
BstC8I GCNNGC 1 cut(s) 633
BstDEI CTNAG 2 cut(s) 159, 417
BstF5I GGATG 3 cut(s) 432, 756, 790
BstHHI GCGC 1 cut(s) 423
BstKTI GATC 3 cut(s) 311, 624, 816
BstMAI GTCTC 1 cut(s) 446
BstMBI GATC 3 cut(s) 308, 621, 813
BstMWI GCNNNNNNNGC 2 cut(s) 751, 902
BstNI CCWGG 3 cut(s) 539, 747, 818
BstNSI RCATGY 1 cut(s) 157
BstPAI GACNNNNGTC 2 cut(s) 25, 77
BstSCI CCNGG 3 cut(s) 537, 745, 816
BstSFI CTRYAG 1 cut(s) 894
BstV1I GCAGC 1 cut(s) 411
BstV2I GAAGAC 1 cut(s) 48
BsuRI GGCC 3 cut(s) 186, 288, 448
BtsCI GGATG 3 cut(s) 432, 756, 790
BtsI GCAGTG 1 cut(s) 182
BtsIMutI CAGTG 3 cut(s) 182, 201, 731
Cac8I GCNNGC 1 cut(s) 633
CciI TCATGA 2 cut(s) 81, 583
CfoI GCGC 1 cut(s) 423
CseI GACGC 1 cut(s) 129
Csp6I GTAC 1 cut(s) 769
CviAII CATG 7 cut(s) 82, 154, 226, 412, 584, 803, 952
CviQI GTAC 1 cut(s) 769
DdeI CTNAG 2 cut(s) 159, 417
DpnI GATC 3 cut(s) 310, 623, 815
DpnII GATC 3 cut(s) 308, 621, 813
DraIII CACNNNGTG 1 cut(s) 381
Eam1104I CTCTTC 2 cut(s) 683, 731
EarI CTCTTC 2 cut(s) 683, 731
Ecl136II GAGCTC 1 cut(s) 778
Eco147I AGGCCT 2 cut(s) 186, 288
Eco24I GRGCYC 1 cut(s) 780
Eco32I GATATC 1 cut(s) 351
Eco53kI GAGCTC 1 cut(s) 778
Eco57I CTGAAG 1 cut(s) 755
Eco88I CYCGRG 1 cut(s) 725
EcoICRI GAGCTC 1 cut(s) 778
EcoRI GAATTC 2 cut(s) 239, 587
EcoRII CCWGG 3 cut(s) 537, 745, 816
EcoRV GATATC 1 cut(s) 351
EcoT38I GRGCYC 1 cut(s) 780
FaeI CATG 7 cut(s) 85, 157, 229, 415, 587, 806, 955
FaqI GGGAC 3 cut(s) 742, 834, 865
FatI CATG 7 cut(s) 81, 153, 225, 411, 583, 802, 951
Fnu4HI GCNGC 2 cut(s) 198, 400
FokI GGATG 3 cut(s) 419, 763, 797
FriOI GRGCYC 1 cut(s) 780
Fsp4HI GCNGC 2 cut(s) 198, 400
FspBI CTAG 2 cut(s) 182, 575
GlaI GCGC 1 cut(s) 422
GluI GCNGC 2 cut(s) 198, 400
HaeIII GGCC 3 cut(s) 186, 288, 448
HapII CCGG 3 cut(s) 356, 449, 1000
HgaI GACGC 1 cut(s) 129
HhaI GCGC 1 cut(s) 423
Hin1II CATG 7 cut(s) 85, 157, 229, 415, 587, 806, 955
Hin6I GCGC 1 cut(s) 421
HinP1I GCGC 1 cut(s) 421
HinfI GANTC 6 cut(s) 21, 503, 571, 713, 853, 890
HpaII CCGG 3 cut(s) 356, 449, 1000
HphI GGTGA 4 cut(s) 128, 181, 345, 965
Hpy166II GTNNAC 1 cut(s) 844
Hpy188I TCNGA 2 cut(s) 34, 145
Hpy188III TCNNGA 9 cut(s) 82, 95, 329, 584, 592, 685, 707, 727, 921
Hpy8I GTNNAC 1 cut(s) 844
Hpy99I CGWCG 1 cut(s) 145
HpyAV CCTTC 2 cut(s) 73, 989
HpyCH4III ACNGT 3 cut(s) 322, 379, 557
HpyCH4V TGCA 4 cut(s) 388, 788, 875, 896
HpyF10VI GCNNNNNNNGC 2 cut(s) 751, 902
HpyF3I CTNAG 2 cut(s) 159, 417
Hsp92II CATG 7 cut(s) 85, 157, 229, 415, 587, 806, 955
HspAI GCGC 1 cut(s) 421
Kzo9I GATC 3 cut(s) 308, 621, 813
LmnI GCTCC 1 cut(s) 469
Lsp1109I GCAGC 1 cut(s) 411
LweI GCATC 4 cut(s) 432, 741, 775, 862
MaeI CTAG 2 cut(s) 182, 575
MalI GATC 3 cut(s) 310, 623, 815
MboI GATC 3 cut(s) 308, 621, 813
MboII GAAGA 4 cut(s) 53, 631, 700, 748
MhlI GDGCHC 2 cut(s) 726, 780
MluCI AATT 5 cut(s) 239, 587, 796, 900, 914
MlyI GAGTC 5 cut(s) 15, 497, 722, 847, 899
MmeI TCCRAC 1 cut(s) 123
MspI CCGG 3 cut(s) 356, 449, 1000
MspR9I CCNGG 3 cut(s) 539, 747, 818
MvaI CCWGG 3 cut(s) 539, 747, 818
MwoI GCNNNNNNNGC 2 cut(s) 751, 902
NdeII GATC 3 cut(s) 308, 621, 813
NlaIII CATG 7 cut(s) 85, 157, 229, 415, 587, 806, 955
NlaIV GGNNCC 3 cut(s) 367, 471, 526
NmeAIII GCCGAG 1 cut(s) 780
NspI RCATGY 1 cut(s) 157
PagI TCATGA 2 cut(s) 81, 583
PceI AGGCCT 2 cut(s) 186, 288
PfeI GAWTC 1 cut(s) 571
PkrI GCNGC 2 cut(s) 199, 401
PleI GAGTC 5 cut(s) 15, 497, 721, 847, 898
PpsI GAGTC 5 cut(s) 15, 497, 721, 847, 898
PshAI GACNNNNGTC 2 cut(s) 25, 77
Psp124BI GAGCTC 1 cut(s) 780
Psp6I CCWGG 3 cut(s) 537, 745, 816
PspGI CCWGG 3 cut(s) 537, 745, 816
PspN4I GGNNCC 3 cut(s) 367, 471, 526
PstI CTGCAG 1 cut(s) 898
RsaI GTAC 1 cut(s) 770
RsaNI GTAC 1 cut(s) 769
SacI GAGCTC 1 cut(s) 780
SatI GCNGC 2 cut(s) 198, 400
Sau3AI GATC 3 cut(s) 308, 621, 813
SchI GAGTC 5 cut(s) 15, 497, 722, 847, 899
ScrFI CCNGG 3 cut(s) 539, 747, 818
SduI GDGCHC 2 cut(s) 726, 780
SetI ASST 9 cut(s) 16, 170, 404, 535, 552, 743, 780, 829, 1012
SfaNI GCATC 4 cut(s) 432, 741, 775, 862
SfcI CTRYAG 1 cut(s) 894
SmlI CTYRAG 4 cut(s) 329, 707, 779, 919
SmoI CTYRAG 4 cut(s) 329, 707, 779, 919
Sse9I AATT 5 cut(s) 239, 587, 796, 900, 914
SseBI AGGCCT 2 cut(s) 186, 288
SsiI CCGC 3 cut(s) 198, 458, 976
SspMI CTAG 2 cut(s) 182, 575
SstI GAGCTC 1 cut(s) 780
StuI AGGCCT 2 cut(s) 186, 288
StyD4I CCNGG 3 cut(s) 537, 745, 816
TaaI ACNGT 3 cut(s) 322, 379, 557
TaqI TCGA 4 cut(s) 71, 243, 264, 339
TasI AATT 5 cut(s) 239, 587, 796, 900, 914
TatI WGTACW 1 cut(s) 768
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 1 cut(s) 571
TscAI CASTG 3 cut(s) 182, 208, 738
TseI GCWGC 1 cut(s) 399
TspDTI ATGAA 5 cut(s) 54, 98, 572, 600, 940
TspRI CASTG 3 cut(s) 182, 208, 738
XapI RAATTY 2 cut(s) 239, 587
XceI RCATGY 1 cut(s) 157
XspI CTAG 2 cut(s) 182, 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.