Rorug02G0059100

L-type lectin-domain containing receptor kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
4549644 .. 4552946
3303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0059100.1

Sequence Viewer

Length: 1173 bp
ATGTCTTTGTCCTCCAAAAAACCCAGGTTGAAGTTGAAGTTGGAGTTGGAGTTGGAGTTGGAGGAGGCTAACAAGTCGCTCTACATGTGTGTTCTAGAGCACAGGAGAGACTGGGTGGCTTATGTTGTCCGCACCATCAGACTGTCGGATTTGTTATCATCTTCGGGGGACGATCCATTGCCATTACGGCAAGTGGCTTATGAGGCCGGTTCGCATCTTCCCGGATCTGTGGGTTGCGGTGTTTGGGGATCCCAAATTTTTTTCACCGGCGGCGTGACACCCAGCTCCTCTCACGGCTGGAGGGAAATAGGTCCCGACTCAGTTTGTCATACAAATGTTTATGCCTTTGAAACACGCACAAATGAGATCAGAAAGCTTGATGCCAACTTACAAGGAGGGAAACTTTACCCTCTGATGGTGGAGCTGGGCGGCAAACTGTACGCTCTTTCCTATAGGCTTGTCGGCCATCCTCCATCGTTTGAGGTATTTGACCCTAACATAGGCAAGTGGGAAGGTTTGCCCCAGCCTCCATTTTTCCAAGTTTCCTCTCCATATTATGCAAATTGCAACTTCTCTTACGCAATCGCCGGCACCAAGATCTTTGCCTCGGATGAAAACTGTCCCGTGTTCTGCTTTGACGTCGCCCACCCAGACAGAGAATGGAGACTGGTCTCTACTATGTGCCGGGGTGGCTCTTTTCCCTTCGATAACAAAGTAGCATTAGTCCTGGACCTGCAGCAGGGGGACGATGACAAGAAAATAATGTTTGCCTACAGTCATGAGCCTTGGCGTCTATGGGTATATCTTATGTCATTGTATGAAAACCAAGAAACTATCACAAAAATCGGTGATCTGAGGATGCCAGTGTTGCCTGATGAATTCGGTTTGCCACAACGCTGTGAATTTTTGCACATAGGAGGCCAGAAAGCCTGCCTTGTTATCACCGAAATCGGCTTCCTTGATGAAGACGACCCTGCTTATAATGAGCTCGGTACTCATAAGAGACACGGTGCAGTCATACCATTTCAATTTGAAGTTGATATCACCAAGGTGGACAAGGACAAGAAAAATTGTTTAACACTCCAATTTATGCCTCTTCGCAGCTTCGAATACCATACCAACCCATCCACTCTACCTGAATCTGAAGCGATGGAAGCTGAATTCAGACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

390

Amino Acids

44.24

Weight (kDa)

5.37

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 108 - 243 9.5e-11 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000688)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 981
AatII GACGTC 1 cut(s) 642
Acc36I ACCTGC 1 cut(s) 741
AccB1I GGYRCC 1 cut(s) 590
AciI CCGC 4 cut(s) 130, 237, 270, 429
AclWI GGATC 4 cut(s) 167, 232, 243, 256
AcoI YGGCCR 1 cut(s) 463
AcsI RAATTY 4 cut(s) 255, 878, 902, 1160
AcuI CTGAAG 1 cut(s) 1164
AcyI GRCGYC 2 cut(s) 639, 790
AfaI GTAC 2 cut(s) 440, 994
AfiI CCNNNNNNNGG 3 cut(s) 415, 500, 739
AflIII ACRYGT 1 cut(s) 84
AgsI TTSAA 5 cut(s) 31, 37, 350, 1028, 1034
AjnI CCWGG 2 cut(s) 23, 726
AjuI GAANNNNNNNTTGG 4 cut(s) 23, 29, 55, 61
AleI CACNNNNGTG 1 cut(s) 1049
AluBI AGCT 6 cut(s) 285, 376, 424, 988, 1104, 1157
AluI AGCT 6 cut(s) 285, 376, 424, 988, 1104, 1157
Alw21I GWGCWC 2 cut(s) 102, 990
Alw26I GTCTC 4 cut(s) 102, 658, 676, 997
AlwI GGATC 4 cut(s) 167, 232, 243, 256
AoxI GGCC 3 cut(s) 204, 463, 919
ApeKI GCWGC 2 cut(s) 736, 1101
ApoI RAATTY 4 cut(s) 255, 878, 902, 1160
AspS9I GGNCC 2 cut(s) 311, 730
AsuC2I CCSGG 2 cut(s) 222, 686
AsuHPI GGTGA 4 cut(s) 256, 860, 934, 1036
AsuII TTCGAA 1 cut(s) 1107
AvaII GGWCC 2 cut(s) 311, 730
BamHI GGATCC 1 cut(s) 248
BanI GGYRCC 1 cut(s) 590
BanII GRGCYC 1 cut(s) 990
BbsI GAAGAC 1 cut(s) 972
Bbv12I GWGCWC 2 cut(s) 102, 990
BbvI GCAGC 2 cut(s) 748, 1113
BccI CCATC 6 cut(s) 143, 409, 474, 481, 1132, 1144
BceAI ACGGC 2 cut(s) 203, 310
BciT130I CCWGG 2 cut(s) 25, 728
BcnI CCSGG 2 cut(s) 222, 686
BcoDI GTCTC 4 cut(s) 102, 658, 676, 997
BfaI CTAG 2 cut(s) 95, 1171
BfmI CTRYAG 3 cut(s) 451, 734, 772
BfuAI ACCTGC 1 cut(s) 741
BglI GCCNNNNNGGC 2 cut(s) 187, 690
BglII AGATCT 1 cut(s) 597
BisI GCNGC 4 cut(s) 271, 430, 737, 1102
BlsI GCNGC 4 cut(s) 272, 431, 738, 1103
Bme1390I CCNGG 4 cut(s) 25, 222, 686, 728
Bme18I GGWCC 2 cut(s) 311, 730
BmgT120I GGNCC 2 cut(s) 311, 730
BmiI GGNNCC 3 cut(s) 250, 313, 592
BmrFI CCNGG 4 cut(s) 25, 222, 686, 728
BmrI ACTGGG 1 cut(s) 121
BmsI GCATC 3 cut(s) 223, 370, 849
BmuI ACTGGG 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 972
BpmI CTGGAG 1 cut(s) 319
Bpu14I TTCGAA 1 cut(s) 1107
BpuMI CCSGG 2 cut(s) 222, 686
BsaHI GRCGYC 2 cut(s) 639, 790
BsaI GGTCTC 1 cut(s) 676
BsaJI CCNNGG 5 cut(s) 23, 606, 685, 785, 1047
BsaXI ACNNNNNCTCC 4 cut(s) 35, 41, 65, 71
Bsc4I CCNNNNNNNGG 3 cut(s) 415, 500, 739
Bse118I RCCGGY 3 cut(s) 206, 266, 587
Bse1I ACTGG 3 cut(s) 116, 672, 863
Bse3DI GCAATG 1 cut(s) 176
BseBI CCWGG 2 cut(s) 25, 728
BseDI CCNNGG 5 cut(s) 23, 606, 685, 785, 1047
BseGI GGATG 4 cut(s) 466, 616, 864, 1124
BseLI CCNNNNNNNGG 3 cut(s) 415, 500, 739
BseMI GCAATG 1 cut(s) 176
BseMII CTCAG 2 cut(s) 333, 845
BseNI ACTGG 3 cut(s) 116, 672, 863
BseRI GAGGAG 2 cut(s) 77, 277
BseXI GCAGC 2 cut(s) 748, 1113
BseYI CCCAGC 3 cut(s) 281, 424, 522
BsgI GTGCAG 1 cut(s) 1032
BshFI GGCC 3 cut(s) 206, 465, 921
BshNI GGYRCC 1 cut(s) 590
BsiHKAI GWGCWC 2 cut(s) 102, 990
BsiSI CCGG 5 cut(s) 207, 222, 267, 588, 685
BslFI GGGAC 4 cut(s) 182, 297, 606, 758
BslI CCNNNNNNNGG 3 cut(s) 415, 500, 739
BsmAI GTCTC 4 cut(s) 102, 658, 676, 997
BsmFI GGGAC 4 cut(s) 182, 297, 606, 758
BsnI GGCC 3 cut(s) 206, 465, 921
Bso31I GGTCTC 1 cut(s) 676
Bsp119I TTCGAA 1 cut(s) 1107
Bsp1286I GDGCHC 2 cut(s) 102, 990
Bsp143I GATC 6 cut(s) 172, 224, 248, 366, 597, 850
BspACI CCGC 4 cut(s) 130, 237, 270, 429
BspANI GGCC 3 cut(s) 206, 465, 921
BspCNI CTCAG 2 cut(s) 332, 846
BspHI TCATGA 1 cut(s) 778
BspLI GGNNCC 3 cut(s) 250, 313, 592
BspMAI CTGCAG 1 cut(s) 738
BspMI ACCTGC 1 cut(s) 741
BspPI GGATC 4 cut(s) 167, 232, 243, 256
BspT104I TTCGAA 1 cut(s) 1107
BspT107I GGYRCC 1 cut(s) 590
BspTNI GGTCTC 1 cut(s) 676
BsrDI GCAATG 1 cut(s) 176
BsrFI RCCGGY 3 cut(s) 206, 266, 587
BsrI ACTGG 3 cut(s) 116, 672, 863
BssAI RCCGGY 3 cut(s) 206, 266, 587
BssECI CCNNGG 5 cut(s) 23, 606, 685, 785, 1047
BssMI GATC 6 cut(s) 172, 224, 248, 366, 597, 850
BssNI GRCGYC 2 cut(s) 639, 790
BssT1I CCWWGG 2 cut(s) 785, 1047
Bst2UI CCWGG 2 cut(s) 25, 728
Bst4CI ACNGT 5 cut(s) 144, 438, 620, 776, 1010
Bst6I CTCTTC 1 cut(s) 1101
BstACI GRCGYC 2 cut(s) 639, 790
BstBI TTCGAA 1 cut(s) 1107
BstC8I GCNNGC 2 cut(s) 589, 931
BstDEI CTNAG 2 cut(s) 319, 854
BstENI CCTNNNNNAGG 2 cut(s) 498, 737
BstF5I GGATG 4 cut(s) 466, 616, 864, 1124
BstKTI GATC 6 cut(s) 175, 227, 251, 369, 600, 853
BstMAI GTCTC 4 cut(s) 102, 658, 676, 997
BstMBI GATC 6 cut(s) 172, 224, 248, 366, 597, 850
BstMWI GCNNNNNNNGC 5 cut(s) 187, 203, 690, 868, 1154
BstNI CCWGG 2 cut(s) 25, 728
BstNSI RCATGY 1 cut(s) 88
BstSCI CCNGG 4 cut(s) 23, 220, 684, 726
BstSFI CTRYAG 3 cut(s) 451, 734, 772
BstV1I GCAGC 2 cut(s) 748, 1113
BstV2I GAAGAC 1 cut(s) 972
BstX2I RGATCY 3 cut(s) 224, 248, 597
BstYI RGATCY 3 cut(s) 224, 248, 597
BsuRI GGCC 3 cut(s) 206, 465, 921
BtgZI GCGATG 1 cut(s) 1163
BtsCI GGATG 4 cut(s) 466, 616, 864, 1124
BtsIMutI CAGTG 1 cut(s) 870
BveI ACCTGC 1 cut(s) 741
Cac8I GCNNGC 2 cut(s) 589, 931
CciI TCATGA 1 cut(s) 778
Cfr10I RCCGGY 3 cut(s) 206, 266, 587
Cfr13I GGNCC 2 cut(s) 311, 730
CseI GACGC 1 cut(s) 779
Csp6I GTAC 2 cut(s) 439, 993
CviAII CATG 2 cut(s) 85, 779
CviQI GTAC 2 cut(s) 439, 993
DdeI CTNAG 2 cut(s) 319, 854
DpnI GATC 6 cut(s) 174, 226, 250, 368, 599, 852
DpnII GATC 6 cut(s) 172, 224, 248, 366, 597, 850
EaeI YGGCCR 1 cut(s) 463
Eam1104I CTCTTC 1 cut(s) 1101
EarI CTCTTC 1 cut(s) 1101
Ecl136II GAGCTC 1 cut(s) 988
Eco130I CCWWGG 2 cut(s) 785, 1047
Eco24I GRGCYC 1 cut(s) 990
Eco31I GGTCTC 1 cut(s) 676
Eco32I GATATC 1 cut(s) 1042
Eco47I GGWCC 2 cut(s) 311, 730
Eco53kI GAGCTC 1 cut(s) 988
Eco57I CTGAAG 1 cut(s) 1164
EcoICRI GAGCTC 1 cut(s) 988
EcoNI CCTNNNNNAGG 2 cut(s) 498, 737
EcoO109I RGGNCCY 1 cut(s) 311
EcoRI GAATTC 2 cut(s) 878, 1160
EcoRII CCWGG 2 cut(s) 23, 726
EcoRV GATATC 1 cut(s) 1042
EcoT14I CCWWGG 2 cut(s) 785, 1047
EcoT38I GRGCYC 1 cut(s) 990
ErhI CCWWGG 2 cut(s) 785, 1047
FaeI CATG 2 cut(s) 88, 782
FalI AAGNNNNNCTT 2 cut(s) 918, 950
FaqI GGGAC 4 cut(s) 182, 297, 606, 758
FatI CATG 2 cut(s) 84, 778
Fnu4HI GCNGC 4 cut(s) 271, 430, 737, 1102
FokI GGATG 4 cut(s) 453, 623, 871, 1111
FriOI GRGCYC 1 cut(s) 990
Fsp4HI GCNGC 4 cut(s) 271, 430, 737, 1102
FspBI CTAG 2 cut(s) 95, 1171
GluI GCNGC 4 cut(s) 271, 430, 737, 1102
GsaI CCCAGC 3 cut(s) 285, 428, 526
GsuI CTGGAG 1 cut(s) 319
HaeIII GGCC 3 cut(s) 206, 465, 921
HapII CCGG 5 cut(s) 207, 222, 267, 588, 685
HgaI GACGC 1 cut(s) 779
Hin1I GRCGYC 2 cut(s) 639, 790
Hin1II CATG 2 cut(s) 88, 782
HindIII AAGCTT 1 cut(s) 374
HinfI GANTC 3 cut(s) 317, 1139, 1167
HpaII CCGG 5 cut(s) 207, 222, 267, 588, 685
HphI GGTGA 4 cut(s) 256, 860, 934, 1036
Hpy166II GTNNAC 1 cut(s) 1054
Hpy188I TCNGA 8 cut(s) 140, 148, 371, 414, 610, 855, 1144, 1166
Hpy188III TCNNGA 3 cut(s) 95, 314, 779
Hpy8I GTNNAC 1 cut(s) 1054
Hpy99I CGWCG 1 cut(s) 644
HpyAV CCTTC 2 cut(s) 506, 712
HpyCH4III ACNGT 5 cut(s) 144, 438, 620, 776, 1010
HpyCH4IV ACGT 1 cut(s) 639
HpyCH4V TGCA 5 cut(s) 560, 567, 736, 910, 1013
HpyF10VI GCNNNNNNNGC 5 cut(s) 187, 203, 690, 868, 1154
HpyF3I CTNAG 2 cut(s) 319, 854
HpySE526I ACGT 1 cut(s) 639
Hsp92I GRCGYC 2 cut(s) 639, 790
Hsp92II CATG 2 cut(s) 88, 782
KroI GCCGGC 1 cut(s) 587
KroNI GCCGGC 1 cut(s) 589
Kzo9I GATC 6 cut(s) 172, 224, 248, 366, 597, 850
LmnI GCTCC 2 cut(s) 290, 421
Lsp1109I GCAGC 2 cut(s) 748, 1113
LweI GCATC 3 cut(s) 223, 370, 849
MaeI CTAG 2 cut(s) 95, 1171
MaeII ACGT 1 cut(s) 639
MaeIII GTNAC 1 cut(s) 274
MalI GATC 6 cut(s) 174, 226, 250, 368, 599, 852
MboI GATC 6 cut(s) 172, 224, 248, 366, 597, 850
MboII GAAGA 4 cut(s) 153, 209, 977, 1088
MflI RGATCY 3 cut(s) 224, 248, 597
MhlI GDGCHC 2 cut(s) 102, 990
MluCI AATT 8 cut(s) 255, 562, 878, 902, 1028, 1069, 1085, 1160
MlyI GAGTC 2 cut(s) 311, 1161
MmeI TCCRAC 5 cut(s) 21, 27, 33, 39, 126
MroNI GCCGGC 1 cut(s) 587
MseI TTAA 1 cut(s) 1076
MslI CAYNNNNRTG 2 cut(s) 333, 1049
MspI CCGG 5 cut(s) 207, 222, 267, 588, 685
MspR9I CCNGG 4 cut(s) 25, 222, 686, 728
MvaI CCWGG 2 cut(s) 25, 728
MwoI GCNNNNNNNGC 5 cut(s) 187, 203, 690, 868, 1154
NaeI GCCGGC 1 cut(s) 589
NciI CCSGG 2 cut(s) 222, 686
NdeII GATC 6 cut(s) 172, 224, 248, 366, 597, 850
NgoMIV GCCGGC 1 cut(s) 587
NlaIII CATG 2 cut(s) 88, 782
NlaIV GGNNCC 3 cut(s) 250, 313, 592
NmuCI GTSAC 1 cut(s) 274
NspI RCATGY 1 cut(s) 88
NspV TTCGAA 1 cut(s) 1107
OliI CACNNNNGTG 1 cut(s) 1049
PagI TCATGA 1 cut(s) 778
PciI ACATGT 1 cut(s) 84
PdiI GCCGGC 1 cut(s) 589
PfeI GAWTC 1 cut(s) 1139
PfoI TCCNGGA 2 cut(s) 220, 726
PkrI GCNGC 4 cut(s) 272, 431, 738, 1103
PleI GAGTC 2 cut(s) 311, 1161
PpsI GAGTC 2 cut(s) 311, 1161
PpuMI RGGWCCY 1 cut(s) 311
PscI ACATGT 1 cut(s) 84
PsiI TTATAA 1 cut(s) 981
Psp124BI GAGCTC 1 cut(s) 990
Psp5II RGGWCCY 1 cut(s) 311
Psp6I CCWGG 2 cut(s) 23, 726
PspFI CCCAGC 3 cut(s) 281, 424, 522
PspGI CCWGG 2 cut(s) 23, 726
PspN4I GGNNCC 3 cut(s) 250, 313, 592
PspPI GGNCC 2 cut(s) 311, 730
PspPPI RGGWCCY 1 cut(s) 311
PstI CTGCAG 1 cut(s) 738
PsuI RGATCY 3 cut(s) 224, 248, 597
RsaI GTAC 2 cut(s) 440, 994
RsaNI GTAC 2 cut(s) 439, 993
RseI CAYNNNNRTG 2 cut(s) 333, 1049
SacI GAGCTC 1 cut(s) 990
SaqAI TTAA 1 cut(s) 1076
SatI GCNGC 4 cut(s) 271, 430, 737, 1102
Sau3AI GATC 6 cut(s) 172, 224, 248, 366, 597, 850
Sau96I GGNCC 2 cut(s) 311, 730
SchI GAGTC 2 cut(s) 311, 1161
ScrFI CCNGG 4 cut(s) 25, 222, 686, 728
SduI GDGCHC 2 cut(s) 102, 990
SfaNI GCATC 3 cut(s) 223, 370, 849
SfcI CTRYAG 3 cut(s) 451, 734, 772
SfuI TTCGAA 1 cut(s) 1107
SgrAI CRCCGGYG 1 cut(s) 266
SinI GGWCC 2 cut(s) 311, 730
SmiMI CAYNNNNRTG 2 cut(s) 333, 1049
Sse9I AATT 8 cut(s) 255, 562, 878, 902, 1028, 1069, 1085, 1160
SsiI CCGC 4 cut(s) 130, 237, 270, 429
SspMI CTAG 2 cut(s) 95, 1171
SstI GAGCTC 1 cut(s) 990
StyD4I CCNGG 4 cut(s) 23, 220, 684, 726
StyI CCWWGG 2 cut(s) 785, 1047
TaaI ACNGT 5 cut(s) 144, 438, 620, 776, 1010
TaiI ACGT 1 cut(s) 642
TaqI TCGA 2 cut(s) 705, 1107
TasI AATT 8 cut(s) 255, 562, 878, 902, 1028, 1069, 1085, 1160
TauI GCSGC 2 cut(s) 273, 432
TfiI GAWTC 1 cut(s) 1139
Tru1I TTAA 1 cut(s) 1076
Tru9I TTAA 1 cut(s) 1076
TscAI CASTG 1 cut(s) 870
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 2 cut(s) 736, 1101
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 4 cut(s) 627, 834, 891, 978
TspRI CASTG 1 cut(s) 870
VpaK11BI GGWCC 2 cut(s) 311, 730
XagI CCTNNNNNAGG 2 cut(s) 498, 737
XapI RAATTY 4 cut(s) 255, 878, 902, 1160
XbaI TCTAGA 1 cut(s) 94
XceI RCATGY 1 cut(s) 88
XcmI CCANNNNNNNNNTGG 1 cut(s) 657
XspI CTAG 2 cut(s) 95, 1171
ZraI GACGTC 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.