Rmu_co8297221.1_g000001

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8297221.1
OG0000688
Physical Location & Seq
Forward (+)
347 .. 885
539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8297221.1_g000001.1.cds

Sequence Viewer

Length: 539 bp
atgctactcgtagtccacgagttcatgccaaatggcagcttagacaaccacctattctccggaccggaaaatacaaccctagaatggaaccagaggtacaagatcatatctggagtggcttcagtcctacattacctccaggagttccattgcaaagtagtccacagaaatatcacggccagccacataatgctcgattcccacttcaacgcgcgccttggcaacttcggcctgagaagcgcagaacccgaaggtgtggcgggcacaatgggatacattgcccccgagtgcttccacactggagagatgacctgcgagtccgacgtgtacggcttcggggcggtggttctagaagttgtttgcggtcaacgaccgtacaccaaaatcggagggtttcaggttttggttgattgggtgtggtcgttgcatagagaaggacgtgtgcttgaggccgtggatgagaggcttggaaatgagtatgatgttgaagaagcgcaaagacttctgcttcttgggctggcctgctctcatcccattgc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

180

Amino Acids

20.13

Weight (kDa)

5.37

Isoelectric Point (pI)

30.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000688)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09820 FvH4_2g17160 FvH4_2g17160
malus_domestica MD02G1107100.v1.1 MD02G1107300.v1.1 MD05G1144900.v1.1 MD10G1144700.v1.1 MD15G1226500.v1.1
prunus_persica Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.8G183000_v2.0.a1
pyrus_communis pycom05g14000 pycom10g12440 pycom15g20140
rosa_chinensis RchiOBHm_Chr2g0096621 RchiOBHm_Chr6g0281601 RchiOBHm_Chr6g0281651 RchiOBHm_Chr7g0212121
rosa_laevigata RLG00000002926 RLG00000002927 RLG00000002933 RLG00000008638 RLG00000012954 RLG00000012955 RLG00000016656
rosa_multiflora Rmu_co8091766.1_g000001 Rmu_co8287847.1_g000001 Rmu_co8297221.1_g000001 Rmu_co8485327.1_g000001 Rmu_co8512767.1_g000001 Rmu_sc0002316.1_g000041 Rmu_sc0003565.1_g000009 Rmu_sc0014556.1_g000004 Rmu_sc0027573.1_g000001 Rmu_sc0030028.1_g000001
rosa_roxburghii Rroxscaffold_1G00026540 Rroxscaffold_2G00145470 Rroxscaffold_3G00247100 Rroxscaffold_3G00247110 Rroxscaffold_3G00247120 Rroxscaffold_5G00362680 Rroxscaffold_5G00362710 Rroxscaffold_7G00186950
rosa_rugosa Rorug02G0059000 Rorug02G0059100 Rorug06G0142300 Rorug07G0131000 Rorug07G0131100
rosa_samantha Rh1DG155700 Rh2AG106500 Rh2AG171500 Rh2BG108800 Rh2BG178900 Rh2CG110600 Rh2CG176400 Rh2DG110100 Rh2DG177600 Rh4BG120600 Rh6BG258300 Rh6CG257100 Rh6DG249200 Rh6DG249300 Rh7AG264100 Rh7AG264200 Rh7BG257800 Rh7BG257900 Rh7BG258000 Rh7BG258100 Rh7CG280600 Rh7CG280700 Rh7DG270600
rosa_wichuraiana Rw2G008240 Rw6G022110 Rw7G022540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 316
Acc36I ACCTGC 1 cut(s) 320
AccII CGCG 2 cut(s) 212, 214
AccIII TCCGGA 1 cut(s) 59
AciI CCGC 3 cut(s) 260, 341, 363
AcoI YGGCCR 1 cut(s) 177
AcuI CTGAAG 1 cut(s) 105
AfaI GTAC 3 cut(s) 98, 329, 377
AfiI CCNNNNNNNGG 1 cut(s) 84
AflIII ACRYGT 2 cut(s) 324, 439
AgsI TTSAA 2 cut(s) 208, 488
AjiI CACGTC 2 cut(s) 325, 440
AjnI CCWGG 1 cut(s) 138
AluBI AGCT 1 cut(s) 39
AluI AGCT 1 cut(s) 39
Ama87I CYCGRG 1 cut(s) 284
Aor13HI TCCGGA 1 cut(s) 59
AoxI GGCC 4 cut(s) 177, 229, 450, 519
ApeKI GCWGC 1 cut(s) 36
AspLEI GCGC 4 cut(s) 214, 216, 242, 496
AspS9I GGNCC 1 cut(s) 62
AvaI CYCGRG 1 cut(s) 284
AvaII GGWCC 1 cut(s) 62
BaeGI GKGCMC 1 cut(s) 266
BauI CACGAG 1 cut(s) 17
BbvI GCAGC 1 cut(s) 48
BceAI ACGGC 3 cut(s) 192, 346, 437
BciT130I CCWGG 1 cut(s) 140
BciVI GTATCC 1 cut(s) 266
BfaI CTAG 2 cut(s) 80, 350
BfuAI ACCTGC 1 cut(s) 320
BfuI GTATCC 1 cut(s) 266
BisI GCNGC 1 cut(s) 37
BlsI GCNGC 1 cut(s) 38
Bme1390I CCNGG 1 cut(s) 140
Bme18I GGWCC 1 cut(s) 62
BmeT110I CYCGRG 1 cut(s) 284
BmgBI CACGTC 2 cut(s) 325, 440
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 140
BpmI CTGGAG 3 cut(s) 122, 132, 321
BpuEI CTTGAG 1 cut(s) 467
BsaJI CCNNGG 2 cut(s) 217, 453
BsaWI WCCGGW 2 cut(s) 59, 64
BsaXI ACNNNNNCTCC 4 cut(s) 41, 71, 120, 150
Bsc4I CCNNNNNNNGG 1 cut(s) 84
Bse1I ACTGG 1 cut(s) 304
Bse3DI GCAATG 3 cut(s) 148, 276, 534
BseAI TCCGGA 1 cut(s) 59
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 2 cut(s) 217, 453
BseGI GGATG 2 cut(s) 463, 529
BseLI CCNNNNNNNGG 1 cut(s) 84
BseMI GCAATG 3 cut(s) 148, 276, 534
BseMII CTCAG 1 cut(s) 224
BseNI ACTGG 1 cut(s) 304
BsePI GCGCGC 1 cut(s) 212
BseSI GKGCMC 1 cut(s) 266
BseXI GCAGC 1 cut(s) 48
Bsh1236I CGCG 2 cut(s) 212, 214
Bsh1285I CGRYCG 1 cut(s) 374
BshFI GGCC 4 cut(s) 179, 231, 452, 521
BsiEI CGRYCG 1 cut(s) 374
BsiHKCI CYCGRG 1 cut(s) 284
BsiSI CCGG 2 cut(s) 60, 65
BslI CCNNNNNNNGG 1 cut(s) 84
BsnI GGCC 4 cut(s) 179, 231, 452, 521
BsoBI CYCGRG 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 266
Bsp13I TCCGGA 1 cut(s) 59
Bsp143I GATC 1 cut(s) 102
BspACI CCGC 3 cut(s) 260, 341, 363
BspANI GGCC 4 cut(s) 179, 231, 452, 521
BspCNI CTCAG 1 cut(s) 225
BspEI TCCGGA 1 cut(s) 59
BspFNI CGCG 2 cut(s) 212, 214
BspLI GGNNCC 1 cut(s) 89
BspMI ACCTGC 1 cut(s) 320
BsrDI GCAATG 3 cut(s) 148, 276, 534
BsrI ACTGG 1 cut(s) 304
BssECI CCNNGG 2 cut(s) 217, 453
BssHII GCGCGC 1 cut(s) 212
BssMI GATC 1 cut(s) 102
BssSI CACGAG 1 cut(s) 17
BssT1I CCWWGG 1 cut(s) 217
Bst2BI CACGAG 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 140
Bst4CI ACNGT 1 cut(s) 375
BstC8I GCNNGC 5 cut(s) 181, 214, 262, 519, 523
BstDEI CTNAG 2 cut(s) 40, 233
BstDSI CCRYGG 1 cut(s) 453
BstF5I GGATG 2 cut(s) 463, 529
BstFNI CGCG 2 cut(s) 212, 214
BstHHI GCGC 4 cut(s) 214, 216, 242, 496
BstKTI GATC 1 cut(s) 105
BstMBI GATC 1 cut(s) 102
BstMCI CGRYCG 1 cut(s) 374
BstMWI GCNNNNNNNGC 3 cut(s) 228, 237, 514
BstNI CCWGG 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 138
BstSLI GKGCMC 1 cut(s) 266
BstUI CGCG 2 cut(s) 212, 214
BstV1I GCAGC 1 cut(s) 48
BsuI GTATCC 1 cut(s) 266
BsuRI GGCC 4 cut(s) 179, 231, 452, 521
BtgI CCRYGG 1 cut(s) 453
BtrI CACGTC 2 cut(s) 325, 440
BtsCI GGATG 2 cut(s) 463, 529
BtsIMutI CAGTG 1 cut(s) 297
BveI ACCTGC 1 cut(s) 320
Cac8I GCNNGC 5 cut(s) 181, 214, 262, 519, 523
CfoI GCGC 4 cut(s) 214, 216, 242, 496
Cfr13I GGNCC 1 cut(s) 62
CpoI CGGWCCG 1 cut(s) 62
Csp6I GTAC 3 cut(s) 97, 328, 376
CspI CGGWCCG 1 cut(s) 62
CviAII CATG 1 cut(s) 25
CviQI GTAC 3 cut(s) 97, 328, 376
DdeI CTNAG 2 cut(s) 40, 233
DpnI GATC 1 cut(s) 104
DpnII GATC 1 cut(s) 102
DrdI GACNNNNNNGTC 1 cut(s) 316
DseDI GACNNNNNNGTC 1 cut(s) 316
EaeI YGGCCR 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 62
Eco57I CTGAAG 1 cut(s) 105
Eco88I CYCGRG 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 138
EcoT14I CCWWGG 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 1 cut(s) 28
FaiI YATR 5 cut(s) 26, 107, 188, 429, 480
FatI CATG 1 cut(s) 24
FauI CCCGC 1 cut(s) 253
Fnu4HI GCNGC 1 cut(s) 37
FokI GGATG 2 cut(s) 470, 516
Fsp4HI GCNGC 1 cut(s) 37
FspBI CTAG 2 cut(s) 80, 350
GlaI GCGC 4 cut(s) 213, 215, 241, 495
GluI GCNGC 1 cut(s) 37
GsuI CTGGAG 3 cut(s) 122, 132, 321
HaeIII GGCC 4 cut(s) 179, 231, 452, 521
HapII CCGG 2 cut(s) 60, 65
HhaI GCGC 4 cut(s) 214, 216, 242, 496
Hin1II CATG 1 cut(s) 28
Hin6I GCGC 4 cut(s) 212, 214, 240, 494
HinP1I GCGC 4 cut(s) 212, 214, 240, 494
HincII GTYRAC 1 cut(s) 368
HindII GTYRAC 1 cut(s) 368
HinfI GANTC 2 cut(s) 197, 317
HpaII CCGG 2 cut(s) 60, 65
Hpy166II GTNNAC 5 cut(s) 16, 163, 328, 368, 378
Hpy188I TCNGA 2 cut(s) 322, 389
Hpy188III TCNNGA 3 cut(s) 60, 111, 350
Hpy8I GTNNAC 5 cut(s) 16, 163, 328, 368, 378
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 2 cut(s) 245, 428
HpyCH4III ACNGT 1 cut(s) 375
HpyCH4IV ACGT 2 cut(s) 324, 439
HpyCH4V TGCA 2 cut(s) 153, 427
HpyF10VI GCNNNNNNNGC 3 cut(s) 228, 237, 514
HpyF3I CTNAG 2 cut(s) 40, 233
HpySE526I ACGT 2 cut(s) 324, 439
Hsp92II CATG 1 cut(s) 28
HspAI GCGC 4 cut(s) 212, 214, 240, 494
Kpn2I TCCGGA 1 cut(s) 59
Kzo9I GATC 1 cut(s) 102
Lsp1109I GCAGC 1 cut(s) 48
MaeI CTAG 2 cut(s) 80, 350
MaeII ACGT 2 cut(s) 324, 439
MalI GATC 1 cut(s) 104
MboI GATC 1 cut(s) 102
MboII GAAGA 1 cut(s) 500
MhlI GDGCHC 1 cut(s) 266
MlyI GAGTC 1 cut(s) 326
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 5 cut(s) 87, 146, 383, 442, 456
MroI TCCGGA 1 cut(s) 59
MspI CCGG 2 cut(s) 60, 65
MspR9I CCNGG 1 cut(s) 140
MvaI CCWGG 1 cut(s) 140
MvnI CGCG 2 cut(s) 212, 214
MwoI GCNNNNNNNGC 3 cut(s) 228, 237, 514
NdeII GATC 1 cut(s) 102
NlaIII CATG 1 cut(s) 28
NlaIV GGNNCC 1 cut(s) 89
PauI GCGCGC 1 cut(s) 212
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PfeI GAWTC 1 cut(s) 197
PfoI TCCNGGA 1 cut(s) 138
PkrI GCNGC 1 cut(s) 38
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
Psp6I CCWGG 1 cut(s) 138
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 89
PspPI GGNCC 1 cut(s) 62
PsrI GAACNNNNNNTAC 2 cut(s) 80, 112
PteI GCGCGC 1 cut(s) 212
RsaI GTAC 3 cut(s) 98, 329, 377
RsaNI GTAC 3 cut(s) 97, 328, 376
Rsr2I CGGWCCG 1 cut(s) 62
RsrII CGGWCCG 1 cut(s) 62
SatI GCNGC 1 cut(s) 37
Sau3AI GATC 1 cut(s) 102
Sau96I GGNCC 1 cut(s) 62
SchI GAGTC 1 cut(s) 326
ScrFI CCNGG 1 cut(s) 140
SduI GDGCHC 1 cut(s) 266
SetI ASST 9 cut(s) 41, 54, 98, 138, 256, 314, 327, 402, 442
SinI GGWCC 1 cut(s) 62
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
SsiI CCGC 3 cut(s) 260, 341, 363
SspMI CTAG 2 cut(s) 80, 350
StyD4I CCNGG 1 cut(s) 138
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 1 cut(s) 375
TaiI ACGT 2 cut(s) 327, 442
TaqI TCGA 1 cut(s) 195
TfiI GAWTC 1 cut(s) 197
TscAI CASTG 1 cut(s) 304
TseI GCWGC 1 cut(s) 36
TspDTI ATGAA 1 cut(s) 13
TspRI CASTG 1 cut(s) 304
VpaK11BI GGWCC 1 cut(s) 62
XbaI TCTAGA 1 cut(s) 349
XspI CTAG 2 cut(s) 80, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.