Rh4BG120600

Belongs to the adaptor complexes small subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000688
Physical Location & Seq
Forward (+)
20129910 .. 20141223
11314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG120600.1

Sequence Viewer

Length: 459 bp
ATGATTTCGTGGATGTATGTGATAATGTGCTCTTGCGTTTTTGTGAAGGTGCTTCGCGAGCTCAGCGGGGTGATCCTTGCGCGAGGTCCCAAGCTCTGCAATTTTGTGGAGTGGAGAGAATACAAAGTTGTTTATAAGAGATATGCTAGTCTTTATTTCTGTATGTGTATCGATCAAGATGATAATGAACTAGAGGTCCTTGAGATTATTCATCATTTTGTGGAAATTCTAGACCGATACTTTGGCAGTGTATGTGAATTGGATTTGATCTTTCACTTCCACAAGATCAATGATCCTGAAATGAAGGGTCTAGTGAAGAAGTTACTGGAGCATAATGCAGGGGACTTCACGGAGACCTCGACCTCGGCTTCTGGAAGTAATACAGAAAGAGAAGGGAATGATGAAGCACAAGGTGAATCTCTTGGAAATTTCATTCATAAATTCTATATTTGCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

152

Amino Acids

17.68

Weight (kDa)

5.1

Isoelectric Point (pI)

29.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 16 - 97 5.2e-32 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000688)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09820 FvH4_2g17160 FvH4_2g17160
malus_domestica MD02G1107100.v1.1 MD02G1107300.v1.1 MD05G1144900.v1.1 MD10G1144700.v1.1 MD15G1226500.v1.1
prunus_persica Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.8G183000_v2.0.a1
pyrus_communis pycom05g14000 pycom10g12440 pycom15g20140
rosa_chinensis RchiOBHm_Chr2g0096621 RchiOBHm_Chr6g0281601 RchiOBHm_Chr6g0281651 RchiOBHm_Chr7g0212121
rosa_laevigata RLG00000002926 RLG00000002927 RLG00000002933 RLG00000008638 RLG00000012954 RLG00000012955 RLG00000016656
rosa_multiflora Rmu_co8091766.1_g000001 Rmu_co8287847.1_g000001 Rmu_co8297221.1_g000001 Rmu_co8485327.1_g000001 Rmu_co8512767.1_g000001 Rmu_sc0002316.1_g000041 Rmu_sc0003565.1_g000009 Rmu_sc0014556.1_g000004 Rmu_sc0027573.1_g000001 Rmu_sc0030028.1_g000001
rosa_roxburghii Rroxscaffold_1G00026540 Rroxscaffold_2G00145470 Rroxscaffold_3G00247100 Rroxscaffold_3G00247110 Rroxscaffold_3G00247120 Rroxscaffold_5G00362680 Rroxscaffold_5G00362710 Rroxscaffold_7G00186950
rosa_rugosa Rorug02G0059000 Rorug02G0059100 Rorug06G0142300 Rorug07G0131000 Rorug07G0131100
rosa_samantha Rh1DG155700 Rh2AG106500 Rh2AG171500 Rh2BG108800 Rh2BG178900 Rh2CG110600 Rh2CG176400 Rh2DG110100 Rh2DG177600 Rh4BG120600 Rh6BG258300 Rh6CG257100 Rh6DG249200 Rh6DG249300 Rh7AG264100 Rh7AG264200 Rh7BG257800 Rh7BG257900 Rh7BG258000 Rh7BG258100 Rh7CG280600 Rh7CG280700 Rh7DG270600
rosa_wichuraiana Rw2G008240 Rw6G022110 Rw7G022540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 135
AccII CGCG 2 cut(s) 57, 82
AciI CCGC 1 cut(s) 66
AclWI GGATC 2 cut(s) 67, 287
AcsI RAATTY 3 cut(s) 225, 427, 440
AdeI CACNNNGTG 1 cut(s) 413
AloI GAACNNNNNNTCC 2 cut(s) 180, 212
AluBI AGCT 2 cut(s) 61, 94
AluI AGCT 2 cut(s) 61, 94
Alw21I GWGCWC 2 cut(s) 32, 63
Alw26I GTCTC 1 cut(s) 347
AlwI GGATC 2 cut(s) 67, 287
ApoI RAATTY 3 cut(s) 225, 427, 440
ArsI GACNNNNNNTTYG 2 cut(s) 224, 256
AspLEI GCGC 1 cut(s) 82
AspS9I GGNCC 2 cut(s) 86, 196
AsuHPI GGTGA 2 cut(s) 82, 425
AvaII GGWCC 2 cut(s) 86, 196
BanII GRGCYC 1 cut(s) 63
Bbv12I GWGCWC 2 cut(s) 32, 63
BcoDI GTCTC 1 cut(s) 347
BfaI CTAG 4 cut(s) 147, 191, 230, 311
BlpI GCTNAGC 1 cut(s) 62
Bme18I GGWCC 2 cut(s) 86, 196
BmgT120I GGNCC 2 cut(s) 86, 196
BmiI GGNNCC 1 cut(s) 88
BpmI CTGGAG 1 cut(s) 347
Bpu1102I GCTNAGC 1 cut(s) 62
BpuEI CTTGAG 1 cut(s) 221
Bsa29I ATCGAT 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 1 cut(s) 363
Bse1I ACTGG 1 cut(s) 330
BseCI ATCGAT 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 363
BseGI GGATG 1 cut(s) 18
BseMII CTCAG 1 cut(s) 76
BseNI ACTGG 1 cut(s) 330
Bsh1236I CGCG 2 cut(s) 57, 82
BshVI ATCGAT 1 cut(s) 171
BsiHKAI GWGCWC 2 cut(s) 32, 63
BslFI GGGAC 2 cut(s) 72, 356
BsmAI GTCTC 1 cut(s) 347
BsmFI GGGAC 2 cut(s) 72, 356
Bso31I GGTCTC 1 cut(s) 347
Bsp1286I GDGCHC 2 cut(s) 32, 63
Bsp143I GATC 5 cut(s) 72, 172, 267, 285, 292
Bsp1720I GCTNAGC 1 cut(s) 62
Bsp68I TCGCGA 1 cut(s) 57
BspACI CCGC 1 cut(s) 66
BspCNI CTCAG 1 cut(s) 75
BspDI ATCGAT 1 cut(s) 171
BspFNI CGCG 2 cut(s) 57, 82
BspLI GGNNCC 1 cut(s) 88
BspPI GGATC 2 cut(s) 67, 287
BspTNI GGTCTC 1 cut(s) 347
BsrI ACTGG 1 cut(s) 330
BssECI CCNNGG 1 cut(s) 363
BssMI GATC 5 cut(s) 72, 172, 267, 285, 292
BstC8I GCNNGC 1 cut(s) 59
BstDEI CTNAG 1 cut(s) 62
BstF5I GGATG 1 cut(s) 18
BstFNI CGCG 2 cut(s) 57, 82
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 5 cut(s) 75, 175, 270, 288, 295
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 5 cut(s) 72, 172, 267, 285, 292
BstMWI GCNNNNNNNGC 2 cut(s) 58, 63
BstUI CGCG 2 cut(s) 57, 82
Bsu15I ATCGAT 1 cut(s) 171
BsuTUI ATCGAT 1 cut(s) 171
BtsCI GGATG 1 cut(s) 18
BtsI GCAGTG 1 cut(s) 253
BtsIMutI CAGTG 1 cut(s) 253
BtuMI TCGCGA 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 59
CfoI GCGC 1 cut(s) 82
Cfr13I GGNCC 2 cut(s) 86, 196
ClaI ATCGAT 1 cut(s) 171
CviJI RGCY 3 cut(s) 61, 94, 368
CviKI_1 RGCY 3 cut(s) 61, 94, 368
DdeI CTNAG 1 cut(s) 62
DpnI GATC 5 cut(s) 74, 174, 269, 287, 294
DpnII GATC 5 cut(s) 72, 172, 267, 285, 292
DraIII CACNNNGTG 1 cut(s) 413
Ecl136II GAGCTC 1 cut(s) 61
Eco24I GRGCYC 1 cut(s) 63
Eco31I GGTCTC 1 cut(s) 347
Eco47I GGWCC 2 cut(s) 86, 196
Eco53kI GAGCTC 1 cut(s) 61
EcoICRI GAGCTC 1 cut(s) 61
EcoO109I RGGNCCY 2 cut(s) 86, 196
EcoT38I GRGCYC 1 cut(s) 63
FaiI YATR 8 cut(s) 18, 135, 144, 164, 253, 333, 438, 447
FaqI GGGAC 2 cut(s) 72, 356
FauI CCCGC 1 cut(s) 59
FokI GGATG 1 cut(s) 25
FriOI GRGCYC 1 cut(s) 63
FspBI CTAG 4 cut(s) 147, 191, 230, 311
GlaI GCGC 1 cut(s) 81
GsuI CTGGAG 1 cut(s) 347
HhaI GCGC 1 cut(s) 82
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HinfI GANTC 1 cut(s) 416
HphI GGTGA 2 cut(s) 82, 425
Hpy188III TCNNGA 5 cut(s) 56, 176, 230, 296, 372
HpyAV CCTTC 3 cut(s) 40, 298, 386
HpyCH4V TGCA 2 cut(s) 99, 338
HpyF10VI GCNNNNNNNGC 2 cut(s) 58, 63
HpyF3I CTNAG 1 cut(s) 62
HspAI GCGC 1 cut(s) 80
Kzo9I GATC 5 cut(s) 72, 172, 267, 285, 292
LmnI GCTCC 1 cut(s) 328
LpnPI CCDG 4 cut(s) 309, 311, 324, 357
MaeI CTAG 4 cut(s) 147, 191, 230, 311
MaeIII GTNAC 1 cut(s) 321
MalI GATC 5 cut(s) 74, 174, 269, 287, 294
MboI GATC 5 cut(s) 72, 172, 267, 285, 292
MboII GAAGA 1 cut(s) 328
MhlI GDGCHC 2 cut(s) 32, 63
MluCI AATT 5 cut(s) 100, 225, 257, 427, 440
MnlI CCTC 4 cut(s) 77, 187, 367, 373
MspA1I CMGCKG 1 cut(s) 66
MvnI CGCG 2 cut(s) 57, 82
MwoI GCNNNNNNNGC 2 cut(s) 58, 63
NdeII GATC 5 cut(s) 72, 172, 267, 285, 292
NlaIV GGNNCC 1 cut(s) 88
NmeAIII GCCGAG 1 cut(s) 344
NruI TCGCGA 1 cut(s) 57
PcsI WCGNNNNNNNCGW 1 cut(s) 356
PfeI GAWTC 1 cut(s) 416
PpuMI RGGWCCY 2 cut(s) 86, 196
PsiI TTATAA 1 cut(s) 135
Psp124BI GAGCTC 1 cut(s) 63
Psp5II RGGWCCY 2 cut(s) 86, 196
PspN4I GGNNCC 1 cut(s) 88
PspPI GGNCC 2 cut(s) 86, 196
PspPPI RGGWCCY 2 cut(s) 86, 196
RruI TCGCGA 1 cut(s) 57
SacI GAGCTC 1 cut(s) 63
Sau3AI GATC 5 cut(s) 72, 172, 267, 285, 292
Sau96I GGNCC 2 cut(s) 86, 196
SduI GDGCHC 2 cut(s) 32, 63
SetI ASST 8 cut(s) 51, 63, 88, 96, 198, 359, 365, 415
SinI GGWCC 2 cut(s) 86, 196
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 5 cut(s) 100, 225, 257, 427, 440
SsiI CCGC 1 cut(s) 66
SspMI CTAG 4 cut(s) 147, 191, 230, 311
SstI GAGCTC 1 cut(s) 63
TaqI TCGA 2 cut(s) 171, 359
TaqII GACCGA 1 cut(s) 249
TasI AATT 5 cut(s) 100, 225, 257, 427, 440
TfiI GAWTC 1 cut(s) 416
TscAI CASTG 1 cut(s) 253
TspDTI ATGAA 6 cut(s) 200, 201, 317, 417, 421, 425
TspGWI ACGGA 1 cut(s) 365
TspRI CASTG 1 cut(s) 253
VpaK11BI GGWCC 2 cut(s) 86, 196
XapI RAATTY 3 cut(s) 225, 427, 440
XbaI TCTAGA 1 cut(s) 229
XspI CTAG 4 cut(s) 147, 191, 230, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.