Rorug02G0059000

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000688
Physical Location & Seq
Reverse (-)
4542098 .. 4546051
3954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0059000.1

Sequence Viewer

Length: 882 bp
ATGGCTGCCTCAGAGAATGAGAAAGAGAAGAAGATCGAACAACATGATCATCATCAAGATGAGCAGCAGCACAGAAATAAAAAACGCAAGCAAGTTTTCCCTTACGGCAACTACAGAGCCTACTACGGCTATCGTCTTGGTCAAGACACAGAGGAAGATCCTAGATTGAAGGTTTTCAAGAAGGAATGGTTTGAAGGCAAGGACTGTCTTGACATTGGCTGCAATGCTGGGATCATCACTATACAAATCGCCAAAAAGTTTTGCTGCCGGAGCATCCTTGGAGTTGACATTGATCCTGATCGAGTTCAGGATGCATACTGGCACCTCCAAAAACTTATGAGAATGAAGAAAGCTAAAAAGATACCAGGAAATGCTTCTAAGTTGAAGGTTGGTGAGAGTGCAAATGGGTCAGATTGCAGCATTGAAGGTTCATCAAATGAAGAGACAAAGGATAGCCCAAGGAATTGCTCTTCGGAAGAGACAGATCTATTTGACATAGTCTCTTTCCGGAATGAAGATTTTGTTAATAGCCGAGATCCCCCGAATAAGCATTATGACACCATTCTATGTTTGAGCGTGACAAAATGGATTCATCTGAATTGGGGTGATGATGGCTTGCTTACACTATTTTCAAAGATATGGAGACTACTTCGTCCGGGTGGCATTCTTGTGCTGGAACCTCAACCCTGGAAGTCTTATGATAAGAATCATAAAGTTTCTGAGGCAACAAGAACCAATTATCAAAATATTATATTCCATCCGCAGCTGTTTCAGGATATACTTCTGGATAAGATTGGATTTAGAACAGTGGAAGACATCACTTCCAGCGTGTCGGGCAGCAAATCGGGATTCAACAGACCAATTTTAGTGTTCCAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

293

Amino Acids

33.89

Weight (kDa)

8.34

Isoelectric Point (pI)

42.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_23 PF13489 63 - 228 2.8e-10 Methyltransferase domain
Bin3 PF06859 185 - 293 1.3e-43 Bicoid-interacting protein 3 (Bin3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000688)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09820 FvH4_2g17160 FvH4_2g17160
malus_domestica MD02G1107100.v1.1 MD02G1107300.v1.1 MD05G1144900.v1.1 MD10G1144700.v1.1 MD15G1226500.v1.1
prunus_persica Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.8G183000_v2.0.a1
pyrus_communis pycom05g14000 pycom10g12440 pycom15g20140
rosa_chinensis RchiOBHm_Chr2g0096621 RchiOBHm_Chr6g0281601 RchiOBHm_Chr6g0281651 RchiOBHm_Chr7g0212121
rosa_laevigata RLG00000002926 RLG00000002927 RLG00000002933 RLG00000008638 RLG00000012954 RLG00000012955 RLG00000016656
rosa_multiflora Rmu_co8091766.1_g000001 Rmu_co8287847.1_g000001 Rmu_co8297221.1_g000001 Rmu_co8485327.1_g000001 Rmu_co8512767.1_g000001 Rmu_sc0002316.1_g000041 Rmu_sc0003565.1_g000009 Rmu_sc0014556.1_g000004 Rmu_sc0027573.1_g000001 Rmu_sc0030028.1_g000001
rosa_roxburghii Rroxscaffold_1G00026540 Rroxscaffold_2G00145470 Rroxscaffold_3G00247100 Rroxscaffold_3G00247110 Rroxscaffold_3G00247120 Rroxscaffold_5G00362680 Rroxscaffold_5G00362710 Rroxscaffold_7G00186950
rosa_rugosa Rorug02G0059000 Rorug02G0059100 Rorug06G0142300 Rorug07G0131000 Rorug07G0131100
rosa_samantha Rh1DG155700 Rh2AG106500 Rh2AG171500 Rh2BG108800 Rh2BG178900 Rh2CG110600 Rh2CG176400 Rh2DG110100 Rh2DG177600 Rh4BG120600 Rh6BG258300 Rh6CG257100 Rh6DG249200 Rh6DG249300 Rh7AG264100 Rh7AG264200 Rh7BG257800 Rh7BG257900 Rh7BG258000 Rh7BG258100 Rh7CG280600 Rh7CG280700 Rh7DG270600
rosa_wichuraiana Rw2G008240 Rw6G022110 Rw7G022540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 651
AccB1I GGYRCC 1 cut(s) 321
AccIII TCCGGA 1 cut(s) 507
AciI CCGC 1 cut(s) 761
AclWI GGATC 4 cut(s) 152, 239, 287, 530
AgsI TTSAA 7 cut(s) 169, 178, 194, 385, 425, 633, 853
AjnI CCWGG 2 cut(s) 364, 686
AluBI AGCT 2 cut(s) 353, 766
AluI AGCT 2 cut(s) 353, 766
Alw26I GTCTC 4 cut(s) 437, 473, 505, 637
AlwI GGATC 4 cut(s) 152, 239, 287, 530
Aor13HI TCCGGA 1 cut(s) 507
ApeKI GCWGC 8 cut(s) 5, 64, 67, 219, 264, 417, 763, 837
Asp700I GAANNNNTTC 2 cut(s) 173, 373
AsuC2I CCSGG 1 cut(s) 657
AsuHPI GGTGA 2 cut(s) 404, 617
BanI GGYRCC 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 819
BbvI GCAGC 7 cut(s) 76, 79, 206, 251, 429, 775, 849
BccI CCATC 2 cut(s) 605, 765
BceAI ACGGC 2 cut(s) 121, 142
BciT130I CCWGG 2 cut(s) 366, 688
BclI TGATCA 1 cut(s) 46
BcnI CCSGG 1 cut(s) 657
BcoDI GTCTC 4 cut(s) 437, 473, 505, 637
BfaI CTAG 1 cut(s) 162
BfmI CTRYAG 1 cut(s) 112
BglII AGATCT 1 cut(s) 484
BisI GCNGC 8 cut(s) 6, 65, 68, 220, 265, 418, 764, 838
BlsI GCNGC 8 cut(s) 7, 66, 69, 221, 266, 419, 765, 839
Bme1390I CCNGG 3 cut(s) 366, 657, 688
BmiI GGNNCC 2 cut(s) 323, 678
BmrFI CCNGG 3 cut(s) 366, 657, 688
BmsI GCATC 2 cut(s) 282, 301
BpiI GAAGAC 1 cut(s) 819
BpuMI CCSGG 1 cut(s) 657
BsaBI GATNNNNATC 3 cut(s) 51, 297, 705
BsaJI CCNNGG 3 cut(s) 277, 458, 686
BsaWI WCCGGW 1 cut(s) 507
Bse1I ACTGG 1 cut(s) 323
Bse3DI GCAATG 1 cut(s) 229
Bse8I GATNNNNATC 3 cut(s) 51, 297, 705
BseAI TCCGGA 1 cut(s) 507
BseBI CCWGG 2 cut(s) 366, 688
BseDI CCNNGG 3 cut(s) 277, 458, 686
BseGI GGATG 3 cut(s) 273, 316, 757
BseJI GATNNNNATC 3 cut(s) 51, 297, 705
BseMI GCAATG 1 cut(s) 229
BseMII CTCAG 2 cut(s) 24, 711
BseNI ACTGG 1 cut(s) 323
BseXI GCAGC 7 cut(s) 76, 79, 206, 251, 429, 775, 849
BseYI CCCAGC 1 cut(s) 227
BshNI GGYRCC 1 cut(s) 321
BsiSI CCGG 3 cut(s) 268, 508, 656
BsmAI GTCTC 4 cut(s) 437, 473, 505, 637
BsmI GAATGC 1 cut(s) 663
Bsp13I TCCGGA 1 cut(s) 507
Bsp143I GATC 8 cut(s) 33, 46, 157, 231, 292, 298, 484, 535
BspACI CCGC 1 cut(s) 761
BspCNI CTCAG 2 cut(s) 23, 712
BspEI TCCGGA 1 cut(s) 507
BspLI GGNNCC 2 cut(s) 323, 678
BspPI GGATC 4 cut(s) 152, 239, 287, 530
BspQI GCTCTTC 1 cut(s) 475
BspT107I GGYRCC 1 cut(s) 321
BsrDI GCAATG 1 cut(s) 229
BsrI ACTGG 1 cut(s) 323
BssECI CCNNGG 3 cut(s) 277, 458, 686
BssMI GATC 8 cut(s) 33, 46, 157, 231, 292, 298, 484, 535
BssT1I CCWWGG 2 cut(s) 277, 458
Bst2UI CCWGG 2 cut(s) 366, 688
Bst4CI ACNGT 2 cut(s) 206, 808
Bst6I CTCTTC 3 cut(s) 435, 471, 475
BstC8I GCNNGC 2 cut(s) 89, 617
BstDEI CTNAG 3 cut(s) 10, 378, 720
BstF5I GGATG 3 cut(s) 273, 316, 757
BstKTI GATC 8 cut(s) 36, 49, 160, 234, 295, 301, 487, 538
BstMAI GTCTC 4 cut(s) 437, 473, 505, 637
BstMBI GATC 8 cut(s) 33, 46, 157, 231, 292, 298, 484, 535
BstMWI GCNNNNNNNGC 2 cut(s) 270, 834
BstNI CCWGG 2 cut(s) 366, 688
BstSCI CCNGG 3 cut(s) 364, 655, 686
BstSFI CTRYAG 1 cut(s) 112
BstV1I GCAGC 7 cut(s) 76, 79, 206, 251, 429, 775, 849
BstV2I GAAGAC 1 cut(s) 819
BstX2I RGATCY 3 cut(s) 157, 484, 535
BstYI RGATCY 3 cut(s) 157, 484, 535
BtsCI GGATG 3 cut(s) 273, 316, 757
BtsIMutI CAGTG 1 cut(s) 813
Cac8I GCNNGC 2 cut(s) 89, 617
CviAII CATG 1 cut(s) 44
CviJI RGCY 9 cut(s) 5, 119, 129, 219, 353, 456, 531, 615, 766
CviKI_1 RGCY 9 cut(s) 5, 119, 129, 219, 353, 456, 531, 615, 766
DdeI CTNAG 3 cut(s) 10, 378, 720
DpnI GATC 8 cut(s) 35, 48, 159, 233, 294, 300, 486, 537
DpnII GATC 8 cut(s) 33, 46, 157, 231, 292, 298, 484, 535
DrdI GACNNNNNNGTC 1 cut(s) 651
DseDI GACNNNNNNGTC 1 cut(s) 651
Eam1104I CTCTTC 3 cut(s) 435, 471, 475
EarI CTCTTC 3 cut(s) 435, 471, 475
Eco130I CCWWGG 2 cut(s) 277, 458
EcoRII CCWGG 2 cut(s) 364, 686
EcoT14I CCWWGG 2 cut(s) 277, 458
EcoT22I ATGCAT 1 cut(s) 316
ErhI CCWWGG 2 cut(s) 277, 458
FaeI CATG 1 cut(s) 47
FatI CATG 1 cut(s) 43
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 8 cut(s) 6, 65, 68, 220, 265, 418, 764, 838
FokI GGATG 3 cut(s) 260, 323, 744
Fsp4HI GCNGC 8 cut(s) 6, 65, 68, 220, 265, 418, 764, 838
FspBI CTAG 1 cut(s) 162
GluI GCNGC 8 cut(s) 6, 65, 68, 220, 265, 418, 764, 838
GsaI CCCAGC 1 cut(s) 231
HapII CCGG 3 cut(s) 268, 508, 656
Hin1II CATG 1 cut(s) 47
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HinfI GANTC 3 cut(s) 589, 706, 849
HpaII CCGG 3 cut(s) 268, 508, 656
HphI GGTGA 2 cut(s) 404, 617
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 5 cut(s) 13, 412, 475, 597, 721
Hpy8I GTNNAC 1 cut(s) 286
HpyAV CCTTC 5 cut(s) 163, 175, 188, 379, 419
HpyCH4III ACNGT 2 cut(s) 206, 808
HpyCH4V TGCA 4 cut(s) 222, 314, 401, 417
HpyF10VI GCNNNNNNNGC 2 cut(s) 270, 834
HpyF3I CTNAG 3 cut(s) 10, 378, 720
Hsp92II CATG 1 cut(s) 47
Kpn2I TCCGGA 1 cut(s) 507
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 8 cut(s) 33, 46, 157, 231, 292, 298, 484, 535
LguI GCTCTTC 1 cut(s) 475
LmnI GCTCC 1 cut(s) 270
Lsp1109I GCAGC 7 cut(s) 76, 79, 206, 251, 429, 775, 849
LweI GCATC 2 cut(s) 282, 301
MaeI CTAG 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 577
MalI GATC 8 cut(s) 35, 48, 159, 233, 294, 300, 486, 537
MboI GATC 8 cut(s) 33, 46, 157, 231, 292, 298, 484, 535
MboII GAAGA 9 cut(s) 40, 43, 167, 358, 452, 462, 488, 527, 824
MflI RGATCY 3 cut(s) 157, 484, 535
MluCI AATT 4 cut(s) 463, 598, 736, 861
MnlI CCTC 5 cut(s) 19, 145, 335, 690, 715
Mph1103I ATGCAT 1 cut(s) 316
MroI TCCGGA 1 cut(s) 507
MroXI GAANNNNTTC 2 cut(s) 173, 373
MseI TTAA 1 cut(s) 525
MslI CAYNNNNRTG 2 cut(s) 57, 668
MspA1I CMGCKG 1 cut(s) 766
MspI CCGG 3 cut(s) 268, 508, 656
MspR9I CCNGG 3 cut(s) 366, 657, 688
Mva1269I GAATGC 1 cut(s) 663
MvaI CCWGG 2 cut(s) 366, 688
MwoI GCNNNNNNNGC 2 cut(s) 270, 834
NciI CCSGG 1 cut(s) 657
NdeII GATC 8 cut(s) 33, 46, 157, 231, 292, 298, 484, 535
NlaIII CATG 1 cut(s) 47
NlaIV GGNNCC 2 cut(s) 323, 678
NmeAIII GCCGAG 1 cut(s) 557
NmuCI GTSAC 1 cut(s) 577
NsiI ATGCAT 1 cut(s) 316
PciSI GCTCTTC 1 cut(s) 475
PctI GAATGC 1 cut(s) 663
PdmI GAANNNNTTC 2 cut(s) 173, 373
PfeI GAWTC 3 cut(s) 589, 706, 849
PflFI GACNNNGTC 1 cut(s) 497
PkrI GCNGC 8 cut(s) 7, 66, 69, 221, 266, 419, 765, 839
Psp6I CCWGG 2 cut(s) 364, 686
PspFI CCCAGC 1 cut(s) 227
PspGI CCWGG 2 cut(s) 364, 686
PspN4I GGNNCC 2 cut(s) 323, 678
PsuI RGATCY 3 cut(s) 157, 484, 535
PsyI GACNNNGTC 1 cut(s) 497
PvuII CAGCTG 1 cut(s) 766
RseI CAYNNNNRTG 2 cut(s) 57, 668
SapI GCTCTTC 1 cut(s) 475
SaqAI TTAA 1 cut(s) 525
SatI GCNGC 8 cut(s) 6, 65, 68, 220, 265, 418, 764, 838
Sau3AI GATC 8 cut(s) 33, 46, 157, 231, 292, 298, 484, 535
ScrFI CCNGG 3 cut(s) 366, 657, 688
SetI ASST 7 cut(s) 174, 327, 355, 390, 430, 682, 768
SfaNI GCATC 2 cut(s) 282, 301
SfcI CTRYAG 1 cut(s) 112
SmiMI CAYNNNNRTG 2 cut(s) 57, 668
Sse9I AATT 4 cut(s) 463, 598, 736, 861
SsiI CCGC 1 cut(s) 761
SspI AATATT 1 cut(s) 748
SspMI CTAG 1 cut(s) 162
StyD4I CCNGG 3 cut(s) 364, 655, 686
StyI CCWWGG 2 cut(s) 277, 458
TaaI ACNGT 2 cut(s) 206, 808
TaqI TCGA 2 cut(s) 36, 301
TasI AATT 4 cut(s) 463, 598, 736, 861
TfiI GAWTC 3 cut(s) 589, 706, 849
Tru1I TTAA 1 cut(s) 525
Tru9I TTAA 1 cut(s) 525
TscAI CASTG 1 cut(s) 813
TseFI GTSAC 1 cut(s) 577
TseI GCWGC 8 cut(s) 5, 64, 67, 219, 264, 417, 763, 837
Tsp45I GTSAC 1 cut(s) 577
TspDTI ATGAA 5 cut(s) 359, 420, 453, 528, 581
TspRI CASTG 1 cut(s) 813
Tth111I GACNNNGTC 1 cut(s) 497
XmnI GAANNNNTTC 2 cut(s) 173, 373
XspI CTAG 1 cut(s) 162
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.