Rroxscaffold_1G00026540

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000688
Physical Location & Seq
Forward (+)
33413025 .. 33413747
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00026540.1

Sequence Viewer

Length: 723 bp
ATGACCAACAACTCGGTAGGACCTTGTACAACCGGTCTTTCACCCTACGGAACTCGATCTCGACTCTTCTTCTCGGGATGCGTCACCTCCTTCAACTCGTCCTTCCTCATTAACGTCTATCGTCTCAATGGCTCCGCCGTCCCCGGAGAGAGCAACGCCTTCATTACAGCCCCGGATTTGACCATCCCGGCAAACGGCGGCGGTCAATGTCTCGGTTTGACGAACGCCACCACCGACGGTAACCCCACCAATCACTTGGTGGCATTTGAGCTCGATACTTTGAAGGAGGGCTTCGATCCGGACACCAACCACATGGGGCTGAATATCAACTCGGTTAAGTCTAACAAGACGGTGCCACTTTCGGATTTAAGGAATCGAGATCGTGCAACCGGGCACGGAGTTTATATGGTGTGGATCCAATACGATGGTGGGTCACATAATCTGTCGGTGTTCATGGCCAACCAGACCGATCAGAACAAGGACGGAAAGGGAGCGTTTGTTAATATCCGGCCTCGGCCCACCAGCCCAATTCTAACCGCCAACCTTAACCTCAAGGACATTGTCAACCAAAAGTCCTACTTCGGATTCACAACTTCCACCGGGAGTTACAGCCAGCTCAACTGCGTGTTGATGTGGAATCTAACGGTGGAGATTCTGCCGGATGTGGAAGATGGAGATTTGGCATTGCTTGATTTTGGGGCTAAATGGCAGAATGAATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

240

Amino Acids

26.06

Weight (kDa)

5.27

Isoelectric Point (pI)

26.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 11 - 217 1.6e-43 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000688)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09820 FvH4_2g17160 FvH4_2g17160
malus_domestica MD02G1107100.v1.1 MD02G1107300.v1.1 MD05G1144900.v1.1 MD10G1144700.v1.1 MD15G1226500.v1.1
prunus_persica Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.8G183000_v2.0.a1
pyrus_communis pycom05g14000 pycom10g12440 pycom15g20140
rosa_chinensis RchiOBHm_Chr2g0096621 RchiOBHm_Chr6g0281601 RchiOBHm_Chr6g0281651 RchiOBHm_Chr7g0212121
rosa_laevigata RLG00000002926 RLG00000002927 RLG00000002933 RLG00000008638 RLG00000012954 RLG00000012955 RLG00000016656
rosa_multiflora Rmu_co8091766.1_g000001 Rmu_co8287847.1_g000001 Rmu_co8297221.1_g000001 Rmu_co8485327.1_g000001 Rmu_co8512767.1_g000001 Rmu_sc0002316.1_g000041 Rmu_sc0003565.1_g000009 Rmu_sc0014556.1_g000004 Rmu_sc0027573.1_g000001 Rmu_sc0030028.1_g000001
rosa_roxburghii Rroxscaffold_1G00026540 Rroxscaffold_2G00145470 Rroxscaffold_3G00247100 Rroxscaffold_3G00247110 Rroxscaffold_3G00247120 Rroxscaffold_5G00362680 Rroxscaffold_5G00362710 Rroxscaffold_7G00186950
rosa_rugosa Rorug02G0059000 Rorug02G0059100 Rorug06G0142300 Rorug07G0131000 Rorug07G0131100
rosa_samantha Rh1DG155700 Rh2AG106500 Rh2AG171500 Rh2BG108800 Rh2BG178900 Rh2CG110600 Rh2CG176400 Rh2DG110100 Rh2DG177600 Rh4BG120600 Rh6BG258300 Rh6CG257100 Rh6DG249200 Rh6DG249300 Rh7AG264100 Rh7AG264200 Rh7BG257800 Rh7BG257900 Rh7BG258000 Rh7BG258100 Rh7CG280600 Rh7CG280700 Rh7DG270600
rosa_wichuraiana Rw2G008240 Rw6G022110 Rw7G022540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 352
AccIII TCCGGA 1 cut(s) 298
AciI CCGC 4 cut(s) 135, 198, 201, 537
AclWI GGATC 3 cut(s) 290, 409, 422
AcoI YGGCCR 1 cut(s) 456
AdeI CACNNNGTG 1 cut(s) 259
AfaI GTAC 1 cut(s) 28
AfiI CCNNNNNNNGG 1 cut(s) 194
AgeI ACCGGT 1 cut(s) 32
AgsI TTSAA 2 cut(s) 94, 283
AluBI AGCT 2 cut(s) 271, 616
AluI AGCT 2 cut(s) 271, 616
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 2 cut(s) 128, 215
AlwI GGATC 3 cut(s) 290, 409, 422
Ama87I CYCGRG 1 cut(s) 73
Aor13HI TCCGGA 1 cut(s) 298
AoxI GGCC 3 cut(s) 456, 509, 515
AsiGI ACCGGT 1 cut(s) 32
AspS9I GGNCC 2 cut(s) 20, 516
AsuC2I CCSGG 5 cut(s) 144, 173, 188, 391, 601
AsuHPI GGTGA 2 cut(s) 33, 76
AvaI CYCGRG 1 cut(s) 73
AvaII GGWCC 1 cut(s) 20
BaeGI GKGCMC 1 cut(s) 396
BalI TGGCCA 1 cut(s) 458
BamHI GGATCC 1 cut(s) 414
BanI GGYRCC 1 cut(s) 352
BanII GRGCYC 1 cut(s) 273
Bbv12I GWGCWC 1 cut(s) 273
BccI CCATC 3 cut(s) 191, 419, 665
BceAI ACGGC 2 cut(s) 122, 211
BcnI CCSGG 5 cut(s) 144, 173, 188, 391, 601
BcoDI GTCTC 2 cut(s) 128, 215
BisI GCNGC 1 cut(s) 199
BlsI GCNGC 1 cut(s) 200
Bme1390I CCNGG 5 cut(s) 144, 173, 188, 391, 601
Bme18I GGWCC 1 cut(s) 20
BmeT110I CYCGRG 1 cut(s) 73
BmgT120I GGNCC 2 cut(s) 20, 516
BmiI GGNNCC 3 cut(s) 133, 354, 416
BmrFI CCNGG 5 cut(s) 144, 173, 188, 391, 601
BmsI GCATC 1 cut(s) 68
BpuEI CTTGAG 1 cut(s) 536
BpuMI CCSGG 5 cut(s) 144, 173, 188, 391, 601
BsaJI CCNNGG 3 cut(s) 142, 171, 512
BsaWI WCCGGW 2 cut(s) 32, 298
BsaXI ACNNNNNCTCC 2 cut(s) 483, 513
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse118I RCCGGY 1 cut(s) 32
Bse3DI GCAATG 1 cut(s) 683
BseAI TCCGGA 1 cut(s) 298
BseDI CCNNGG 3 cut(s) 142, 171, 512
BseGI GGATG 3 cut(s) 83, 183, 667
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMI GCAATG 1 cut(s) 683
BseSI GKGCMC 1 cut(s) 396
BshFI GGCC 3 cut(s) 458, 511, 517
BshNI GGYRCC 1 cut(s) 352
BshTI ACCGGT 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 273
BsiHKCI CYCGRG 1 cut(s) 73
BsiSI CCGG 9 cut(s) 33, 144, 173, 188, 299, 390, 508, 600, 659
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 2 cut(s) 128, 215
BsmBI CGTCTC 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 3 cut(s) 458, 511, 517
BsoBI CYCGRG 1 cut(s) 73
Bsp1286I GDGCHC 2 cut(s) 273, 396
Bsp13I TCCGGA 1 cut(s) 298
Bsp1407I TGTACA 1 cut(s) 26
Bsp143I GATC 5 cut(s) 56, 295, 379, 414, 469
BspACI CCGC 4 cut(s) 135, 198, 201, 537
BspANI GGCC 3 cut(s) 458, 511, 517
BspEI TCCGGA 1 cut(s) 298
BspLI GGNNCC 3 cut(s) 133, 354, 416
BspPI GGATC 3 cut(s) 290, 409, 422
BspT107I GGYRCC 1 cut(s) 352
BsrDI GCAATG 1 cut(s) 683
BsrFI RCCGGY 1 cut(s) 32
BsrGI TGTACA 1 cut(s) 26
BssAI RCCGGY 1 cut(s) 32
BssECI CCNNGG 3 cut(s) 142, 171, 512
BssMI GATC 5 cut(s) 56, 295, 379, 414, 469
Bst4CI ACNGT 3 cut(s) 239, 352, 646
Bst6I CTCTTC 1 cut(s) 71
BstAUI TGTACA 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 614
BstEII GGTNACC 1 cut(s) 239
BstF5I GGATG 3 cut(s) 83, 183, 667
BstKTI GATC 5 cut(s) 59, 298, 382, 417, 472
BstMAI GTCTC 2 cut(s) 128, 215
BstMBI GATC 5 cut(s) 56, 295, 379, 414, 469
BstPI GGTNACC 1 cut(s) 239
BstSCI CCNGG 5 cut(s) 142, 171, 186, 389, 599
BstSLI GKGCMC 1 cut(s) 396
BstX2I RGATCY 1 cut(s) 414
BstXI CCANNNNNNTGG 3 cut(s) 256, 313, 425
BstYI RGATCY 1 cut(s) 414
BsuRI GGCC 3 cut(s) 458, 511, 517
BtsCI GGATG 3 cut(s) 83, 183, 667
Cac8I GCNNGC 1 cut(s) 614
Cfr10I RCCGGY 1 cut(s) 32
Cfr13I GGNCC 2 cut(s) 20, 516
CseI GACGC 1 cut(s) 70
Csp6I GTAC 1 cut(s) 27
CspAI ACCGGT 1 cut(s) 32
CviAII CATG 2 cut(s) 313, 454
CviQI GTAC 1 cut(s) 27
DpnI GATC 5 cut(s) 58, 297, 381, 416, 471
DpnII GATC 5 cut(s) 56, 295, 379, 414, 469
DraIII CACNNNGTG 1 cut(s) 259
EaeI YGGCCR 1 cut(s) 456
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
EciI GGCGGA 1 cut(s) 124
Ecl136II GAGCTC 1 cut(s) 271
Eco24I GRGCYC 1 cut(s) 273
Eco47I GGWCC 1 cut(s) 20
Eco53kI GAGCTC 1 cut(s) 271
Eco88I CYCGRG 1 cut(s) 73
Eco91I GGTNACC 1 cut(s) 239
EcoICRI GAGCTC 1 cut(s) 271
EcoO109I RGGNCCY 1 cut(s) 20
EcoO65I GGTNACC 1 cut(s) 239
EcoT38I GRGCYC 1 cut(s) 273
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 2 cut(s) 316, 457
FaiI YATR 5 cut(s) 314, 405, 407, 438, 455
FalI AAGNNNNNCTT 4 cut(s) 275, 307, 563, 595
FaqI GGGAC 1 cut(s) 125
FatI CATG 2 cut(s) 312, 453
Fnu4HI GCNGC 1 cut(s) 199
FokI GGATG 3 cut(s) 90, 170, 674
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 1 cut(s) 199
GluI GCNGC 1 cut(s) 199
HaeIII GGCC 3 cut(s) 458, 511, 517
HapII CCGG 9 cut(s) 33, 144, 173, 188, 299, 390, 508, 600, 659
HgaI GACGC 1 cut(s) 70
Hin1II CATG 2 cut(s) 316, 457
HincII GTYRAC 1 cut(s) 565
HindII GTYRAC 1 cut(s) 565
HinfI GANTC 5 cut(s) 63, 373, 585, 637, 652
HpaII CCGG 9 cut(s) 33, 144, 173, 188, 299, 390, 508, 600, 659
HphI GGTGA 2 cut(s) 33, 76
Hpy166II GTNNAC 1 cut(s) 565
Hpy188I TCNGA 3 cut(s) 364, 474, 584
Hpy188III TCNNGA 4 cut(s) 60, 75, 299, 377
Hpy8I GTNNAC 1 cut(s) 565
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 4 cut(s) 100, 112, 169, 277
HpyCH4III ACNGT 3 cut(s) 239, 352, 646
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 1 cut(s) 386
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 2 cut(s) 316, 457
Kpn2I TCCGGA 1 cut(s) 298
Kzo9I GATC 5 cut(s) 56, 295, 379, 414, 469
LmnI GCTCC 2 cut(s) 137, 491
LweI GCATC 1 cut(s) 68
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 4 cut(s) 82, 239, 432, 605
MalI GATC 5 cut(s) 58, 297, 381, 416, 471
MboI GATC 5 cut(s) 56, 295, 379, 414, 469
MboII GAAGA 3 cut(s) 58, 61, 680
MflI RGATCY 1 cut(s) 414
MhlI GDGCHC 2 cut(s) 273, 396
MlsI TGGCCA 1 cut(s) 458
MluCI AATT 1 cut(s) 528
MluNI TGGCCA 1 cut(s) 458
MlyI GAGTC 1 cut(s) 57
MnlI CCTC 5 cut(s) 97, 116, 280, 522, 560
Mox20I TGGCCA 1 cut(s) 458
MroI TCCGGA 1 cut(s) 298
MscI TGGCCA 1 cut(s) 458
MseI TTAA 5 cut(s) 111, 336, 368, 501, 546
Msp20I TGGCCA 1 cut(s) 458
MspI CCGG 9 cut(s) 33, 144, 173, 188, 299, 390, 508, 600, 659
MspR9I CCNGG 5 cut(s) 144, 173, 188, 391, 601
NciI CCSGG 5 cut(s) 144, 173, 188, 391, 601
NdeII GATC 5 cut(s) 56, 295, 379, 414, 469
NlaIII CATG 2 cut(s) 316, 457
NlaIV GGNNCC 3 cut(s) 133, 354, 416
NmeAIII GCCGAG 1 cut(s) 493
NmuCI GTSAC 2 cut(s) 82, 432
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PfeI GAWTC 4 cut(s) 373, 585, 637, 652
PflFI GACNNNGTC 1 cut(s) 560
PinAI ACCGGT 1 cut(s) 32
PkrI GCNGC 1 cut(s) 200
PleI GAGTC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 57
PpuMI RGGWCCY 1 cut(s) 20
Psp124BI GAGCTC 1 cut(s) 273
Psp5II RGGWCCY 1 cut(s) 20
PspEI GGTNACC 1 cut(s) 239
PspN4I GGNNCC 3 cut(s) 133, 354, 416
PspPI GGNCC 2 cut(s) 20, 516
PspPPI RGGWCCY 1 cut(s) 20
PsuI RGATCY 1 cut(s) 414
PsyI GACNNNGTC 1 cut(s) 560
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
SacI GAGCTC 1 cut(s) 273
SaqAI TTAA 5 cut(s) 111, 336, 368, 501, 546
SatI GCNGC 1 cut(s) 199
Sau3AI GATC 5 cut(s) 56, 295, 379, 414, 469
Sau96I GGNCC 2 cut(s) 20, 516
SchI GAGTC 1 cut(s) 57
ScrFI CCNGG 5 cut(s) 144, 173, 188, 391, 601
SduI GDGCHC 2 cut(s) 273, 396
SetI ASST 7 cut(s) 25, 89, 117, 273, 546, 552, 618
SfaNI GCATC 1 cut(s) 68
SinI GGWCC 1 cut(s) 20
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
Sse9I AATT 1 cut(s) 528
SsiI CCGC 4 cut(s) 135, 198, 201, 537
SstI GAGCTC 1 cut(s) 273
StyD4I CCNGG 5 cut(s) 142, 171, 186, 389, 599
TaaI ACNGT 3 cut(s) 239, 352, 646
TaiI ACGT 1 cut(s) 117
TaqI TCGA 5 cut(s) 55, 61, 273, 294, 376
TaqII GACCGA 1 cut(s) 482
TasI AATT 1 cut(s) 528
TatI WGTACW 1 cut(s) 26
TauI GCSGC 1 cut(s) 201
TfiI GAWTC 4 cut(s) 373, 585, 637, 652
Tru1I TTAA 5 cut(s) 111, 336, 368, 501, 546
Tru9I TTAA 5 cut(s) 111, 336, 368, 501, 546
TseFI GTSAC 2 cut(s) 82, 432
Tsp45I GTSAC 2 cut(s) 82, 432
TspDTI ATGAA 2 cut(s) 151, 442
TspGWI ACGGA 3 cut(s) 63, 411, 498
Tth111I GACNNNGTC 1 cut(s) 560
VpaK11BI GGWCC 1 cut(s) 20
XcmI CCANNNNNNNNNTGG 3 cut(s) 253, 256, 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.