pycom10g12440

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000688
Physical Location & Seq
Forward (+)
15936528 .. 15937627
1100 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g12440.3

Sequence Viewer

Length: 909 bp
ATGGTAGGCATCATCTACAGCGACAAAGAGTGGGACGCTCGTGAGGGGTTTGCTTTTCTTATAGGTTTGGATATTCATGTACGTGGACAAAGTCAGGGGCAGTGGCTAGGCCTCGCGAATTCCAGCACCGATTGTCAAGCCACAGGCCACTTCGTTGCTGTTGAATTTGACATGGAGAAGCAAGATTTCGATCCTGATGACAACCACATTGGACTCAACATCAATTCTGTACGATCAGACAAGACTATTTCTCTCAAGCCTTTAGGCATTGAGATATCACTGGAGATATCACCGGAGATACCCACCAACTACAGCGTGCGGGTGGAATACAACAGTAGGTCCACAGTCCTTGAAGTGTACATGGCTATACACTCTCAAACTAACCAGCCAAAGAAGCCTGAGACGCCACTTTTGAAGGACACAATAAACTTGAGGCAGTACCTGAAAAAGGCGTCCTGCTTCGGATTTGCTGGTTCCACAGGCAGCTCAGCGCTTCAGCTGAACTATGCTGTCGGGGTTGGTGTCCCAATAACGGTTTTGCTACTATTCTCTACAGTTTGGGTGGGATTCGGGTATGCGAACAAAAGGAAAAGAACCAGGAACGAAGAGTCCAATGTGCTCGGGACACTGAAGAAGTTGCCAGGGATGCCTAGGGAGTTCAAGTACAAGGAGCTCAAGGAGGCTACCAATAACTTCCATGAGAGCATGAGACTGGGGCAAGGCAGATTCGGCATTGTTTACAGAGGATCTCTGCATGATAAAGATCATGCAAATACCAACACCTCTGCAGAAACTGCTGTCAAGAAATTTTCTCGGGACAACATCAAGGGCAAAGACGATTTCATGGCTGAGCTCACCATAATTCACTGCCTTCACCACAAACAGCTTGTCCGATTAGTAGGTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

303

Amino Acids

33.87

Weight (kDa)

8.6

Isoelectric Point (pI)

34.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000688)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09820 FvH4_2g17160 FvH4_2g17160
malus_domestica MD02G1107100.v1.1 MD02G1107300.v1.1 MD05G1144900.v1.1 MD10G1144700.v1.1 MD15G1226500.v1.1
prunus_persica Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.8G183000_v2.0.a1
pyrus_communis pycom05g14000 pycom10g12440 pycom15g20140
rosa_chinensis RchiOBHm_Chr2g0096621 RchiOBHm_Chr6g0281601 RchiOBHm_Chr6g0281651 RchiOBHm_Chr7g0212121
rosa_laevigata RLG00000002926 RLG00000002927 RLG00000002933 RLG00000008638 RLG00000012954 RLG00000012955 RLG00000016656
rosa_multiflora Rmu_co8091766.1_g000001 Rmu_co8287847.1_g000001 Rmu_co8297221.1_g000001 Rmu_co8485327.1_g000001 Rmu_co8512767.1_g000001 Rmu_sc0002316.1_g000041 Rmu_sc0003565.1_g000009 Rmu_sc0014556.1_g000004 Rmu_sc0027573.1_g000001 Rmu_sc0030028.1_g000001
rosa_roxburghii Rroxscaffold_1G00026540 Rroxscaffold_2G00145470 Rroxscaffold_3G00247100 Rroxscaffold_3G00247110 Rroxscaffold_3G00247120 Rroxscaffold_5G00362680 Rroxscaffold_5G00362710 Rroxscaffold_7G00186950
rosa_rugosa Rorug02G0059000 Rorug02G0059100 Rorug06G0142300 Rorug07G0131000 Rorug07G0131100
rosa_samantha Rh1DG155700 Rh2AG106500 Rh2AG171500 Rh2BG108800 Rh2BG178900 Rh2CG110600 Rh2CG176400 Rh2DG110100 Rh2DG177600 Rh4BG120600 Rh6BG258300 Rh6CG257100 Rh6DG249200 Rh6DG249300 Rh7AG264100 Rh7AG264200 Rh7BG257800 Rh7BG257900 Rh7BG258000 Rh7BG258100 Rh7CG280600 Rh7CG280700 Rh7DG270600
rosa_wichuraiana Rw2G008240 Rw6G022110 Rw7G022540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 116
AciI CCGC 1 cut(s) 319
AclWI GGATC 2 cut(s) 185, 754
AcsI RAATTY 3 cut(s) 118, 164, 806
AcuI CTGAAG 2 cut(s) 479, 650
AcyI GRCGYC 2 cut(s) 404, 452
AfaI GTAC 5 cut(s) 81, 231, 359, 440, 665
AfeI AGCGCT 1 cut(s) 492
AfiI CCNNNNNNNGG 2 cut(s) 448, 532
AgsI TTSAA 4 cut(s) 164, 353, 415, 661
AjnI CCWGG 2 cut(s) 596, 640
AloI GAACNNNNNNTCC 2 cut(s) 593, 625
AluBI AGCT 5 cut(s) 486, 499, 673, 853, 886
AluI AGCT 5 cut(s) 486, 499, 673, 853, 886
Alw21I GWGCWC 3 cut(s) 621, 675, 855
Alw26I GTCTC 2 cut(s) 395, 703
AlwI GGATC 2 cut(s) 185, 754
AlwNI CAGNNNCTG 2 cut(s) 442, 794
Ama87I CYCGRG 2 cut(s) 620, 813
Aor51HI AGCGCT 1 cut(s) 492
AoxI GGCC 2 cut(s) 109, 145
ApeKI GCWGC 1 cut(s) 483
ApoI RAATTY 3 cut(s) 118, 164, 806
ArsI GACNNNNNNTTYG 4 cut(s) 394, 426, 873, 905
AspA2I CCTAGG 1 cut(s) 650
AspLEI GCGC 1 cut(s) 493
AspS9I GGNCC 1 cut(s) 339
AsuHPI GGTGA 3 cut(s) 282, 847, 866
AvaI CYCGRG 2 cut(s) 620, 813
AvaII GGWCC 1 cut(s) 339
AvrII CCTAGG 1 cut(s) 650
BanII GRGCYC 2 cut(s) 675, 855
BauI CACGAG 1 cut(s) 39
Bbv12I GWGCWC 3 cut(s) 621, 675, 855
BbvI GCAGC 1 cut(s) 495
BciT130I CCWGG 2 cut(s) 598, 642
BcoDI GTCTC 2 cut(s) 395, 703
BfaI CTAG 2 cut(s) 107, 651
BfmI CTRYAG 4 cut(s) 16, 310, 552, 786
BfoI RGCGCY 1 cut(s) 494
BisI GCNGC 1 cut(s) 484
BlnI CCTAGG 1 cut(s) 650
BlpI GCTNAGC 2 cut(s) 487, 849
BlsI GCNGC 1 cut(s) 485
Bme1390I CCNGG 2 cut(s) 598, 642
Bme18I GGWCC 1 cut(s) 339
BmeT110I CYCGRG 2 cut(s) 620, 813
BmgT120I GGNCC 1 cut(s) 339
BmiI GGNNCC 1 cut(s) 475
BmrFI CCNGG 2 cut(s) 598, 642
BmrI ACTGGG 1 cut(s) 722
BmsI GCATC 2 cut(s) 18, 636
BmuI ACTGGG 1 cut(s) 722
BpmI CTGGAG 1 cut(s) 302
Bpu1102I GCTNAGC 2 cut(s) 487, 849
BpuEI CTTGAG 3 cut(s) 239, 451, 659
BsaAI YACGTR 1 cut(s) 83
BsaBI GATNNNNATC 2 cut(s) 189, 762
BsaHI GRCGYC 2 cut(s) 404, 452
BsaJI CCNNGG 2 cut(s) 641, 650
BsaWI WCCGGW 1 cut(s) 292
BsaXI ACNNNNNCTCC 2 cut(s) 647, 677
Bsc4I CCNNNNNNNGG 2 cut(s) 448, 532
Bse1I ACTGG 2 cut(s) 285, 717
Bse8I GATNNNNATC 2 cut(s) 189, 762
BseBI CCWGG 2 cut(s) 598, 642
BseDI CCNNGG 2 cut(s) 641, 650
BseGI GGATG 1 cut(s) 651
BseJI GATNNNNATC 2 cut(s) 189, 762
BseLI CCNNNNNNNGG 2 cut(s) 448, 532
BseMII CTCAG 3 cut(s) 390, 501, 840
BseNI ACTGG 2 cut(s) 285, 717
BseXI GCAGC 1 cut(s) 495
Bsh1236I CGCG 1 cut(s) 116
BshFI GGCC 2 cut(s) 111, 147
BsiHKAI GWGCWC 3 cut(s) 621, 675, 855
BsiHKCI CYCGRG 2 cut(s) 620, 813
BsiSI CCGG 1 cut(s) 293
BslFI GGGAC 4 cut(s) 47, 509, 637, 830
BslI CCNNNNNNNGG 2 cut(s) 448, 532
BsmAI GTCTC 2 cut(s) 395, 703
BsmBI CGTCTC 1 cut(s) 395
BsmFI GGGAC 4 cut(s) 47, 509, 637, 830
BsnI GGCC 2 cut(s) 111, 147
BsoBI CYCGRG 2 cut(s) 620, 813
Bsp1286I GDGCHC 3 cut(s) 621, 675, 855
Bsp1407I TGTACA 1 cut(s) 357
Bsp143I GATC 4 cut(s) 190, 233, 746, 763
Bsp1720I GCTNAGC 2 cut(s) 487, 849
Bsp68I TCGCGA 1 cut(s) 116
BspACI CCGC 1 cut(s) 319
BspANI GGCC 2 cut(s) 111, 147
BspCNI CTCAG 3 cut(s) 391, 500, 841
BspFNI CGCG 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 475
BspMAI CTGCAG 1 cut(s) 790
BspPI GGATC 2 cut(s) 185, 754
BsrGI TGTACA 1 cut(s) 357
BsrI ACTGG 2 cut(s) 285, 717
BssECI CCNNGG 2 cut(s) 641, 650
BssMI GATC 4 cut(s) 190, 233, 746, 763
BssNI GRCGYC 2 cut(s) 404, 452
BssSI CACGAG 1 cut(s) 39
BssT1I CCWWGG 1 cut(s) 650
Bst2BI CACGAG 1 cut(s) 39
Bst2UI CCWGG 2 cut(s) 598, 642
Bst4CI ACNGT 4 cut(s) 335, 346, 535, 556
Bst6I CTCTTC 1 cut(s) 600
BstACI GRCGYC 2 cut(s) 404, 452
BstAPI GCANNNNNTGC 1 cut(s) 794
BstAUI TGTACA 1 cut(s) 357
BstBAI YACGTR 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 317
BstDEI CTNAG 3 cut(s) 399, 487, 849
BstENI CCTNNNNNAGG 1 cut(s) 446
BstF5I GGATG 1 cut(s) 651
BstFNI CGCG 1 cut(s) 116
BstH2I RGCGCY 1 cut(s) 494
BstHHI GCGC 1 cut(s) 493
BstKTI GATC 4 cut(s) 193, 236, 749, 766
BstMAI GTCTC 2 cut(s) 395, 703
BstMBI GATC 4 cut(s) 190, 233, 746, 763
BstMWI GCNNNNNNNGC 5 cut(s) 394, 403, 646, 729, 794
BstNI CCWGG 2 cut(s) 598, 642
BstSCI CCNGG 2 cut(s) 596, 640
BstSFI CTRYAG 4 cut(s) 16, 310, 552, 786
BstUI CGCG 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 495
BstX2I RGATCY 1 cut(s) 746
BstYI RGATCY 1 cut(s) 746
BsuRI GGCC 2 cut(s) 111, 147
BtsCI GGATG 1 cut(s) 651
BtsI GCAGTG 2 cut(s) 107, 865
BtsIMutI CAGTG 4 cut(s) 107, 278, 626, 865
BtuMI TCGCGA 1 cut(s) 116
Cac8I GCNNGC 1 cut(s) 317
CaiI CAGNNNCTG 2 cut(s) 442, 794
CfoI GCGC 1 cut(s) 493
Cfr13I GGNCC 1 cut(s) 339
CseI GACGC 3 cut(s) 44, 412, 441
Csp6I GTAC 5 cut(s) 80, 230, 358, 439, 664
CspCI CAANNNNNGTGG 2 cut(s) 331, 366
CviAII CATG 8 cut(s) 77, 172, 361, 698, 706, 755, 767, 844
CviQI GTAC 5 cut(s) 80, 230, 358, 439, 664
DdeI CTNAG 3 cut(s) 399, 487, 849
DpnI GATC 4 cut(s) 192, 235, 748, 765
DpnII GATC 4 cut(s) 190, 233, 746, 763
Eam1104I CTCTTC 1 cut(s) 600
EarI CTCTTC 1 cut(s) 600
Ecl136II GAGCTC 2 cut(s) 673, 853
Eco130I CCWWGG 1 cut(s) 650
Eco147I AGGCCT 1 cut(s) 111
Eco24I GRGCYC 2 cut(s) 675, 855
Eco32I GATATC 2 cut(s) 276, 288
Eco47I GGWCC 1 cut(s) 339
Eco47III AGCGCT 1 cut(s) 492
Eco53kI GAGCTC 2 cut(s) 673, 853
Eco57I CTGAAG 2 cut(s) 479, 650
Eco88I CYCGRG 2 cut(s) 620, 813
EcoICRI GAGCTC 2 cut(s) 673, 853
EcoNI CCTNNNNNAGG 1 cut(s) 446
EcoRI GAATTC 1 cut(s) 118
EcoRII CCWGG 2 cut(s) 596, 640
EcoRV GATATC 2 cut(s) 276, 288
EcoT14I CCWWGG 1 cut(s) 650
EcoT38I GRGCYC 2 cut(s) 675, 855
ErhI CCWWGG 1 cut(s) 650
Esp3I CGTCTC 1 cut(s) 395
FaeI CATG 8 cut(s) 80, 175, 364, 701, 709, 758, 770, 847
FaqI GGGAC 4 cut(s) 47, 509, 637, 830
FatI CATG 8 cut(s) 76, 171, 360, 697, 705, 754, 766, 843
FauI CCCGC 1 cut(s) 312
Fnu4HI GCNGC 1 cut(s) 484
FokI GGATG 1 cut(s) 658
FriOI GRGCYC 2 cut(s) 675, 855
Fsp4HI GCNGC 1 cut(s) 484
FspBI CTAG 2 cut(s) 107, 651
GlaI GCGC 1 cut(s) 492
GluI GCNGC 1 cut(s) 484
GsuI CTGGAG 1 cut(s) 302
HaeII RGCGCY 1 cut(s) 494
HaeIII GGCC 2 cut(s) 111, 147
HapII CCGG 1 cut(s) 293
HgaI GACGC 3 cut(s) 44, 412, 441
HhaI GCGC 1 cut(s) 493
Hin1I GRCGYC 2 cut(s) 404, 452
Hin1II CATG 8 cut(s) 80, 175, 364, 701, 709, 758, 770, 847
Hin6I GCGC 1 cut(s) 491
HinP1I GCGC 1 cut(s) 491
HinfI GANTC 4 cut(s) 213, 567, 608, 726
HpaII CCGG 1 cut(s) 293
HphI GGTGA 3 cut(s) 282, 847, 866
Hpy166II GTNNAC 4 cut(s) 86, 342, 358, 739
Hpy188I TCNGA 3 cut(s) 238, 464, 893
Hpy188III TCNNGA 6 cut(s) 41, 115, 194, 622, 802, 815
Hpy8I GTNNAC 4 cut(s) 86, 342, 358, 739
HpyAV CCTTC 2 cut(s) 409, 881
HpyCH4III ACNGT 4 cut(s) 335, 346, 535, 556
HpyCH4IV ACGT 1 cut(s) 82
HpyCH4V TGCA 3 cut(s) 754, 770, 788
HpyF10VI GCNNNNNNNGC 5 cut(s) 394, 403, 646, 729, 794
HpyF3I CTNAG 3 cut(s) 399, 487, 849
HpySE526I ACGT 1 cut(s) 82
Hsp92I GRCGYC 2 cut(s) 404, 452
Hsp92II CATG 8 cut(s) 80, 175, 364, 701, 709, 758, 770, 847
HspAI GCGC 1 cut(s) 491
Kzo9I GATC 4 cut(s) 190, 233, 746, 763
LmnI GCTCC 1 cut(s) 670
Lsp1109I GCAGC 1 cut(s) 495
LweI GCATC 2 cut(s) 18, 636
MaeI CTAG 2 cut(s) 107, 651
MaeII ACGT 1 cut(s) 82
MalI GATC 4 cut(s) 192, 235, 748, 765
MboI GATC 4 cut(s) 190, 233, 746, 763
MboII GAAGA 2 cut(s) 617, 643
MflI RGATCY 1 cut(s) 746
MhlI GDGCHC 3 cut(s) 621, 675, 855
MluCI AATT 5 cut(s) 118, 164, 223, 806, 861
MlyI GAGTC 2 cut(s) 207, 617
MnlI CCTC 6 cut(s) 37, 122, 426, 673, 737, 793
MslI CAYNNNNRTG 1 cut(s) 81
MspA1I CMGCKG 1 cut(s) 499
MspI CCGG 1 cut(s) 293
MspR9I CCNGG 2 cut(s) 598, 642
MvaI CCWGG 2 cut(s) 598, 642
MvnI CGCG 1 cut(s) 116
MwoI GCNNNNNNNGC 5 cut(s) 394, 403, 646, 729, 794
NdeII GATC 4 cut(s) 190, 233, 746, 763
NlaIII CATG 8 cut(s) 80, 175, 364, 701, 709, 758, 770, 847
NlaIV GGNNCC 1 cut(s) 475
NruI TCGCGA 1 cut(s) 116
PceI AGGCCT 1 cut(s) 111
PfeI GAWTC 2 cut(s) 567, 726
PflFI GACNNNGTC 1 cut(s) 90
PkrI GCNGC 1 cut(s) 485
PleI GAGTC 2 cut(s) 207, 616
PpsI GAGTC 2 cut(s) 207, 616
Ppu21I YACGTR 1 cut(s) 83
Psp124BI GAGCTC 2 cut(s) 675, 855
Psp6I CCWGG 2 cut(s) 596, 640
PspGI CCWGG 2 cut(s) 596, 640
PspN4I GGNNCC 1 cut(s) 475
PspPI GGNCC 1 cut(s) 339
PstI CTGCAG 1 cut(s) 790
PstNI CAGNNNCTG 2 cut(s) 442, 794
PsuI RGATCY 1 cut(s) 746
PsyI GACNNNGTC 1 cut(s) 90
PvuII CAGCTG 1 cut(s) 499
RruI TCGCGA 1 cut(s) 116
RsaI GTAC 5 cut(s) 81, 231, 359, 440, 665
RsaNI GTAC 5 cut(s) 80, 230, 358, 439, 664
RseI CAYNNNNRTG 1 cut(s) 81
SacI GAGCTC 2 cut(s) 675, 855
SatI GCNGC 1 cut(s) 484
Sau3AI GATC 4 cut(s) 190, 233, 746, 763
Sau96I GGNCC 1 cut(s) 339
SchI GAGTC 2 cut(s) 207, 617
ScrFI CCNGG 2 cut(s) 598, 642
SduI GDGCHC 3 cut(s) 621, 675, 855
SfaNI GCATC 2 cut(s) 18, 636
SfcI CTRYAG 4 cut(s) 16, 310, 552, 786
SinI GGWCC 1 cut(s) 339
SmiMI CAYNNNNRTG 1 cut(s) 81
SmlI CTYRAG 3 cut(s) 254, 430, 674
SmoI CTYRAG 3 cut(s) 254, 430, 674
Sse9I AATT 5 cut(s) 118, 164, 223, 806, 861
SseBI AGGCCT 1 cut(s) 111
SsiI CCGC 1 cut(s) 319
SspMI CTAG 2 cut(s) 107, 651
SstI GAGCTC 2 cut(s) 675, 855
StuI AGGCCT 1 cut(s) 111
StyD4I CCNGG 2 cut(s) 596, 640
StyI CCWWGG 1 cut(s) 650
TaaI ACNGT 4 cut(s) 335, 346, 535, 556
TaiI ACGT 1 cut(s) 85
TaqI TCGA 1 cut(s) 189
TasI AATT 5 cut(s) 118, 164, 223, 806, 861
TatI WGTACW 2 cut(s) 357, 663
TfiI GAWTC 2 cut(s) 567, 726
TscAI CASTG 4 cut(s) 107, 285, 633, 872
TseI GCWGC 1 cut(s) 483
TspDTI ATGAA 2 cut(s) 65, 832
TspRI CASTG 4 cut(s) 107, 285, 633, 872
Tth111I GACNNNGTC 1 cut(s) 90
VpaK11BI GGWCC 1 cut(s) 339
XagI CCTNNNNNAGG 1 cut(s) 446
XapI RAATTY 3 cut(s) 118, 164, 806
XmaJI CCTAGG 1 cut(s) 650
XspI CTAG 2 cut(s) 107, 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.