Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8091766.1

Orthogroup ID

OG0000688

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 593

Gene Structure 593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8091766.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 554 bp

tggaatcattagaaggactattagaagctgcatttcaggttctgtttgatgtcgttatagaagtgaaggacaagtcgactttgatgcttggaccaattattggacatctcaaatccacgctagactgcttaaagccattgattgaagatatatcacagcataacaacatggcattggatcgcccaaagaaggaactagaaacttttggaatgcaaatgaagagtggtgcagagctggttcgcgagtgctcggaggttcataaatggaccagcaacgaaacatacaaattcgccagccaactttttgaattggatgagtctcttcaaaggcacttatgtgtactaatagtgcaggtagcgagagatgtgaaggagacctcggttgtgttaaggagtgtaagagaggtggtggagaaaattgaagggataagtggtgtggcaaaaaaacaacaacttgcattggatatggtggaggtgaatgaaataagggatgtgagggagacgacattggtttcagcaaggaatgtagaggcagagttgacagtagtggatggc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

184

Amino Acids

20.68

Weight (kDa)

4.96

Isoelectric Point (pI)

35.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09820 FvH4_2g17160 FvH4_2g17160
malus_domestica	MD02G1107100.v1.1 MD02G1107300.v1.1 MD05G1144900.v1.1 MD10G1144700.v1.1 MD15G1226500.v1.1
prunus_persica	Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.7G188700_v2.0.a1 Prupe.8G183000_v2.0.a1
pyrus_communis	pycom05g14000 pycom10g12440 pycom15g20140
rosa_chinensis	RchiOBHm_Chr2g0096621 RchiOBHm_Chr6g0281601 RchiOBHm_Chr6g0281651 RchiOBHm_Chr7g0212121
rosa_laevigata	RLG00000002926 RLG00000002927 RLG00000002933 RLG00000008638 RLG00000012954 RLG00000012955 RLG00000016656
rosa_multiflora	Rmu_co8091766.1_g000001 Rmu_co8287847.1_g000001 Rmu_co8297221.1_g000001 Rmu_co8485327.1_g000001 Rmu_co8512767.1_g000001 Rmu_sc0002316.1_g000041 Rmu_sc0003565.1_g000009 Rmu_sc0014556.1_g000004 Rmu_sc0027573.1_g000001 Rmu_sc0030028.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026540 Rroxscaffold_2G00145470 Rroxscaffold_3G00247100 Rroxscaffold_3G00247110 Rroxscaffold_3G00247120 Rroxscaffold_5G00362680 Rroxscaffold_5G00362710 Rroxscaffold_7G00186950
rosa_rugosa	Rorug02G0059000 Rorug02G0059100 Rorug06G0142300 Rorug07G0131000 Rorug07G0131100
rosa_samantha	Rh1DG155700 Rh2AG106500 Rh2AG171500 Rh2BG108800 Rh2BG178900 Rh2CG110600 Rh2CG176400 Rh2DG110100 Rh2DG177600 Rh4BG120600 Rh6BG258300 Rh6CG257100 Rh6DG249200 Rh6DG249300 Rh7AG264100 Rh7AG264200 Rh7BG257800 Rh7BG257900 Rh7BG258000 Rh7BG258100 Rh7CG280600 Rh7CG280700 Rh7DG270600
rosa_wichuraiana	Rw2G008240 Rw6G022110 Rw7G022540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	342
AccB7I	CCANNNNNTGG	1 cut(s)	100
AccI	GTMKAC	1 cut(s)	76
AccII	CGCG	1 cut(s)	242
AclWI	GGATC	1 cut(s)	185
AcsI	RAATTY	1 cut(s)	286
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	2 cut(s)	100, 189
AgsI	TTSAA	4 cut(s)	145, 307, 325, 421
AleI	CACNNNNGTG	1 cut(s)	335
AluBI	AGCT	2 cut(s)	28, 234
AluI	AGCT	2 cut(s)	28, 234
Alw21I	GWGCWC	1 cut(s)	250
Alw26I	GTCTC	3 cut(s)	323, 367, 493
AlwI	GGATC	1 cut(s)	185
AlwNI	CAGNNNCTG	1 cut(s)	42
ApeKI	GCWGC	1 cut(s)	28
ApoI	RAATTY	1 cut(s)	286
AspS9I	GGNCC	2 cut(s)	91, 266
AsuHPI	GGTGA	1 cut(s)	486
AvaII	GGWCC	2 cut(s)	91, 266
Bbv12I	GWGCWC	1 cut(s)	250
BbvI	GCAGC	1 cut(s)	15
BccI	CCATC	1 cut(s)	544
BcgI	CGANNNNNNTGC	2 cut(s)	66, 100
BcoDI	GTCTC	3 cut(s)	323, 367, 493
BfaI	CTAG	2 cut(s)	121, 196
BfuAI	ACCTGC	1 cut(s)	342
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
Bme18I	GGWCC	2 cut(s)	91, 266
BmgT120I	GGNCC	2 cut(s)	91, 266
BmsI	GCATC	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	367
BsaJI	CCNNGG	1 cut(s)	377
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 189
BseDI	CCNNGG	1 cut(s)	377
BseGI	GGATG	2 cut(s)	318, 495
BseLI	CCNNNNNNNGG	2 cut(s)	100, 189
BseXI	GCAGC	1 cut(s)	15
BsgI	GTGCAG	2 cut(s)	248, 370
Bsh1236I	CGCG	1 cut(s)	242
BsiHKAI	GWGCWC	1 cut(s)	250
BslI	CCNNNNNNNGG	2 cut(s)	100, 189
BsmAI	GTCTC	3 cut(s)	323, 367, 493
BsmBI	CGTCTC	1 cut(s)	493
BsmI	GAATGC	1 cut(s)	215
Bso31I	GGTCTC	1 cut(s)	367
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	1 cut(s)	177
Bsp68I	TCGCGA	1 cut(s)	242
BspFNI	CGCG	1 cut(s)	242
BspMI	ACCTGC	1 cut(s)	342
BspPI	GGATC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	367
BssECI	CCNNGG	1 cut(s)	377
BssMI	GATC	1 cut(s)	177
Bst4CI	ACNGT	1 cut(s)	543
Bst6I	CTCTTC	2 cut(s)	214, 326
BstC8I	GCNNGC	1 cut(s)	294
BstF5I	GGATG	2 cut(s)	318, 495
BstFNI	CGCG	1 cut(s)	242
BstKTI	GATC	1 cut(s)	180
BstMAI	GTCTC	3 cut(s)	323, 367, 493
BstMBI	GATC	1 cut(s)	177
BstUI	CGCG	1 cut(s)	242
BstV1I	GCAGC	1 cut(s)	15
BtsCI	GGATG	2 cut(s)	318, 495
BtuMI	TCGCGA	1 cut(s)	242
BveI	ACCTGC	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	294
CaiI	CAGNNNCTG	1 cut(s)	42
Cfr13I	GGNCC	2 cut(s)	91, 266
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	1 cut(s)	168
CviJI	RGCY	4 cut(s)	28, 135, 234, 296
CviKI_1	RGCY	4 cut(s)	28, 135, 234, 296
CviQI	GTAC	1 cut(s)	340
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
Eam1104I	CTCTTC	2 cut(s)	214, 326
EarI	CTCTTC	2 cut(s)	214, 326
Eco31I	GGTCTC	1 cut(s)	367
Eco47I	GGWCC	2 cut(s)	91, 266
Esp3I	CGTCTC	1 cut(s)	493
FaeI	CATG	1 cut(s)	171
FaiI	YATR	8 cut(s)	58, 151, 161, 169, 260, 282, 336, 466
FatI	CATG	1 cut(s)	167
FblI	GTMKAC	1 cut(s)	76
Fnu4HI	GCNGC	1 cut(s)	29
FokI	GGATG	2 cut(s)	325, 502
Fsp4HI	GCNGC	1 cut(s)	29
FspBI	CTAG	2 cut(s)	121, 196
GluI	GCNGC	1 cut(s)	29
Hin1II	CATG	1 cut(s)	171
HincII	GTYRAC	2 cut(s)	77, 539
HindII	GTYRAC	2 cut(s)	77, 539
HinfI	GANTC	2 cut(s)	4, 316
HphI	GGTGA	1 cut(s)	486
Hpy166II	GTNNAC	3 cut(s)	77, 340, 539
Hpy188I	TCNGA	1 cut(s)	252
Hpy188III	TCNNGA	1 cut(s)	241
Hpy8I	GTNNAC	3 cut(s)	77, 340, 539
HpyAV	CCTTC	5 cut(s)	7, 60, 183, 363, 415
HpyCH4III	ACNGT	1 cut(s)	543
HpyCH4V	TGCA	5 cut(s)	31, 213, 229, 351, 457
Hsp92II	CATG	1 cut(s)	171
Kzo9I	GATC	1 cut(s)	177
LpnPI	CCDG	5 cut(s)	22, 220, 282, 306, 337
Lsp1109I	GCAGC	1 cut(s)	15
LweI	GCATC	1 cut(s)	74
MaeI	CTAG	2 cut(s)	121, 196
MalI	GATC	1 cut(s)	179
MboI	GATC	1 cut(s)	177
MboII	GAAGA	3 cut(s)	157, 231, 313
MhlI	GDGCHC	1 cut(s)	250
MluCI	AATT	4 cut(s)	95, 286, 307, 416
MlyI	GAGTC	1 cut(s)	325
MnlI	CCTC	6 cut(s)	246, 387, 396, 465, 488, 522
MseI	TTAA	2 cut(s)	130, 388
MslI	CAYNNNNRTG	1 cut(s)	335
Mva1269I	GAATGC	1 cut(s)	215
MvnI	CGCG	1 cut(s)	242
NdeII	GATC	1 cut(s)	177
NlaIII	CATG	1 cut(s)	171
NruI	TCGCGA	1 cut(s)	242
OliI	CACNNNNGTG	1 cut(s)	335
PctI	GAATGC	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	4
PflMI	CCANNNNNTGG	1 cut(s)	100
PkrI	GCNGC	1 cut(s)	30
PleI	GAGTC	1 cut(s)	324
PpsI	GAGTC	1 cut(s)	324
PspPI	GGNCC	2 cut(s)	91, 266
PstNI	CAGNNNCTG	1 cut(s)	42
RruI	TCGCGA	1 cut(s)	242
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
RseI	CAYNNNNRTG	1 cut(s)	335
SalI	GTCGAC	1 cut(s)	75
SaqAI	TTAA	2 cut(s)	130, 388
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	1 cut(s)	177
Sau96I	GGNCC	2 cut(s)	91, 266
SchI	GAGTC	1 cut(s)	325
SduI	GDGCHC	1 cut(s)	250
SetI	ASST	8 cut(s)	30, 41, 236, 257, 356, 379, 407, 476
SfaNI	GCATC	1 cut(s)	74
SinI	GGWCC	2 cut(s)	91, 266
SmiMI	CAYNNNNRTG	1 cut(s)	335
Sse9I	AATT	4 cut(s)	95, 286, 307, 416
SspMI	CTAG	2 cut(s)	121, 196
TaaI	ACNGT	1 cut(s)	543
TaqI	TCGA	1 cut(s)	76
TasI	AATT	4 cut(s)	95, 286, 307, 416
TatI	WGTACW	1 cut(s)	339
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	130, 388
Tru9I	TTAA	2 cut(s)	130, 388
TseI	GCWGC	1 cut(s)	28
TspDTI	ATGAA	3 cut(s)	232, 247, 494
Van91I	CCANNNNNTGG	1 cut(s)	100
VpaK11BI	GGWCC	2 cut(s)	91, 266
XapI	RAATTY	1 cut(s)	286
XmiI	GTMKAC	1 cut(s)	76
XspI	CTAG	2 cut(s)	121, 196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.