RLG00000002933
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
41906384 .. 41909847
3464 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002933

Sequence Viewer

Length: 1638 bp
ATGGCCCTGGAGTTAATAGCAGGGTCAGTATTTGCAGTGTTGTATGATCGTGTTTCTCGAGCTGTGGACAGGAAATCGGAGTTCAGATCCCTCCTGACTCATATGAAACGCACTCTAGAGTCTTTAACAGGACAGGCCAGATTCATTCGAGAGATACGGGAGTTCAATGATGAATTGAGTCTCCCCAACCATGACATTGCTGATCTTGAAACACAAATGATCGAAGGCTCACAACTCGTTGGCAGGATGTCCAGTTTTCGTATGTACAACTATTGCTGCATGGATGGTTGCCACGACCAGCTTTATGAATTGAATAGGTCTCTCGATAGATTGCTAGACAATCTGCAGCTGCAGCAAGCAAGGGATGTGAAGGAGATATTAAAATTATCTAGGCAAAACCGTGACGATCTGGATGAAATGAAGGGAATGCTGAAGATGATACTGCAGCAGATCAATGATCCTGAAATGAAGGGTCTAGTGAAGAAGTTACTGGAGCAAAATGTAGGGGATTCAACGGAGACCTCGACCTCCGCTTCAGGAAGTAATACAGTAAGAGAAGGGAATGACGAAGCACAAGTGGAATCAGTAGAAGCAGCATTTCGGCTTCTGTTTGATGTCATTATAGAAGTCAAGGACAAGTCGACTTTAATGCTTAGACCGATTATCGGACATCTTAAATCCACTCTAGACTGCTTAAAGCCATTGATTGAAGACATAACACAGCATAACAACAAGGCATTGGATCTCCCAAAGAAGGAACTAGAAGTGTTTGGAATGCAAATGAAGAATGGTGTAGAGCTAGTTCGCAAGTGCTCAAAGTTTCATCAATGGACCAGCAACGAAACTTACAAATATACCAGCCAACTTTTTGAATTGGATGAGTCGTTTCAAAGGCAGTTGAGTGTACTAATAGTGCAGGTGGCGAGGGATGTGAAGGAGATCTCGGTTATGCTAAGGAATGTACGAAAGGTGGTGGAGAGAATTGAAGGGATAAGTGGTGTGGCAAAAAAGCAGCAACTTGCACTGGACGTAGTGGATGCGAATGAAACAAGGGATGCGACGGAGACAACATTAATTCCAGCAAGGAATGTAGAGGCAGAGTTGACTCTAGTGGATGGCGAGGATGGTGAGGTACCTGAACCGCCATCATTTACAGTTGGATTGGATGTTCCTCTGGAGAAATCAAAGATGTCTGGTGACTCTGGTCAGAAACCAATTGCAAGAAAGAAGGAAAAATCAAAGATGAGGCTTCTTCAGGATAGGGTGTCAATGCTTGATCTGACGGGACCCTATACGACGAAGAAGGTGAGGACGACGGACCCGAACAAGTTAGGAGCGTTGAAGAGTCTTCCAGGGATGCCGAGGGAGTTCAGTTACAGGGAGCTGAAGAAAGCGACCAACAACTTTGACTTGAAGCATACGTTGGGTCAGGGTGGATATGGCGCGGTTTACAGAGGATTGCTGTCAAAGGACAATCTTGAAGTGGCAGTGAAGAAGTACTCCAGGCTAGAGATCAAGGGTAAAGACGATTTCTTGGCTGAGCTCACCATTATTTACCGGCTACGCCACAAACATCTCGTCCGATTGCTCGATTTTCACAAACAGGTTGGTGTTGCCAAAAAAAGATGCTATTCATAG

Protein Analysis

546

Amino Acids

62.07

Weight (kDa)

8.47

Isoelectric Point (pI)

33.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 8 - 139 5.5e-16 Arabidopsis broad-spectrum mildew resistance protein RPW8
RPW8 PF05659 196 - 323 1.9e-21 Arabidopsis broad-spectrum mildew resistance protein RPW8
Pkinase PF00069 470 - 535 6.4e-09 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 471 - 532 7.1e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000688)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 907
Acc36I ACCTGC 1 cut(s) 907
Acc65I GGTACC 1 cut(s) 1132
AccB1I GGYRCC 1 cut(s) 1132
AccI GTMKAC 1 cut(s) 641
AccII CGCG 1 cut(s) 1445
AciI CCGC 3 cut(s) 531, 1142, 1445
AclWI GGATC 3 cut(s) 81, 452, 750
AcuI CTGAAG 4 cut(s) 452, 519, 1238, 1406
AfaI GTAC 5 cut(s) 266, 906, 963, 1134, 1499
AfiI CCNNNNNNNGG 2 cut(s) 665, 754
AjnI CCWGG 3 cut(s) 6, 1351, 1502
AjuI GAANNNNNNNTTGG 2 cut(s) 1406, 1438
AloI GAACNNNNNNTCC 2 cut(s) 1152, 1184
AluBI AGCT 6 cut(s) 62, 301, 349, 799, 1384, 1543
AluI AGCT 6 cut(s) 62, 301, 349, 799, 1384, 1543
Alw21I GWGCWC 2 cut(s) 815, 1545
Alw26I GTCTC 4 cut(s) 185, 324, 512, 1058
AlwI GGATC 3 cut(s) 81, 452, 750
Ama87I CYCGRG 1 cut(s) 57
AoxI GGCC 2 cut(s) 3, 135
ApeKI GCWGC 7 cut(s) 276, 346, 349, 352, 445, 593, 1012
ArsI GACNNNNNNTTYG 2 cut(s) 1563, 1595
AseI ATTAAT 1 cut(s) 1073
Asp718I GGTACC 1 cut(s) 1132
AspLEI GCGC 1 cut(s) 1445
AspS9I GGNCC 4 cut(s) 4, 831, 1286, 1318
AsuHPI GGTGA 4 cut(s) 1139, 1208, 1318, 1537
AvaI CYCGRG 1 cut(s) 57
AvaII GGWCC 3 cut(s) 831, 1286, 1318
BaeI ACNNNNGTAYC 2 cut(s) 146, 179
BanI GGYRCC 1 cut(s) 1132
BanII GRGCYC 1 cut(s) 1545
BbsI GAAGAC 2 cut(s) 717, 1340
Bbv12I GWGCWC 2 cut(s) 815, 1545
BbvI GCAGC 7 cut(s) 263, 336, 358, 364, 457, 605, 1024
BccI CCATC 4 cut(s) 278, 1109, 1118, 1153
BcgI CGANNNNNNTGC 2 cut(s) 631, 665
BciT130I CCWGG 3 cut(s) 8, 1353, 1504
BcoDI GTCTC 4 cut(s) 185, 324, 512, 1058
BfaI CTAG 9 cut(s) 116, 335, 390, 476, 686, 761, 800, 1109, 1508
BfmI CTRYAG 3 cut(s) 344, 350, 443
BfuAI ACCTGC 1 cut(s) 907
BglII AGATCT 1 cut(s) 939
BisI GCNGC 7 cut(s) 277, 347, 350, 353, 446, 594, 1013
BlpI GCTNAGC 1 cut(s) 1539
BlsI GCNGC 7 cut(s) 278, 348, 351, 354, 447, 595, 1014
BmcAI AGTACT 1 cut(s) 1499
Bme1390I CCNGG 3 cut(s) 8, 1353, 1504
Bme18I GGWCC 3 cut(s) 831, 1286, 1318
BmeT110I CYCGRG 1 cut(s) 57
BmgT120I GGNCC 4 cut(s) 4, 831, 1286, 1318
BmiI GGNNCC 4 cut(s) 1134, 1287, 1288, 1320
BmrFI CCNGG 3 cut(s) 8, 1353, 1504
BmsI GCATC 4 cut(s) 1027, 1045, 1347, 1616
BoxI GACNNNNGTC 1 cut(s) 1203
BpiI GAAGAC 2 cut(s) 717, 1340
BpmI CTGGAG 4 cut(s) 29, 512, 1196, 1486
Bpu10I CCTNAGC 1 cut(s) 953
Bpu1102I GCTNAGC 1 cut(s) 1539
BsaI GGTCTC 2 cut(s) 324, 512
BsaJI CCNNGG 3 cut(s) 6, 1352, 1361
Bsc4I CCNNNNNNNGG 2 cut(s) 665, 754
Bse118I RCCGGY 1 cut(s) 1557
Bse1I ACTGG 3 cut(s) 252, 495, 1029
Bse3DI GCAATG 1 cut(s) 195
BseBI CCWGG 3 cut(s) 8, 1353, 1504
BseDI CCNNGG 3 cut(s) 6, 1352, 1361
BseLI CCNNNNNNNGG 2 cut(s) 665, 754
BseMI GCAATG 1 cut(s) 195
BseMII CTCAG 1 cut(s) 1530
BseNI ACTGG 3 cut(s) 252, 495, 1029
BseXI GCAGC 7 cut(s) 263, 336, 358, 364, 457, 605, 1024
BsgI GTGCAG 1 cut(s) 935
Bsh1236I CGCG 1 cut(s) 1445
BshFI GGCC 2 cut(s) 5, 137
BshNI GGYRCC 1 cut(s) 1132
BsiHKAI GWGCWC 2 cut(s) 815, 1545
BsiHKCI CYCGRG 1 cut(s) 57
BsiSI CCGG 1 cut(s) 1558
BslFI GGGAC 1 cut(s) 1299
BslI CCNNNNNNNGG 2 cut(s) 665, 754
BsmAI GTCTC 4 cut(s) 185, 324, 512, 1058
BsmFI GGGAC 1 cut(s) 1299
BsmI GAATGC 2 cut(s) 432, 780
BsnI GGCC 2 cut(s) 5, 137
Bso31I GGTCTC 2 cut(s) 324, 512
BsoBI CYCGRG 1 cut(s) 57
Bsp1286I GDGCHC 2 cut(s) 815, 1545
Bsp1407I TGTACA 1 cut(s) 264
Bsp1720I GCTNAGC 1 cut(s) 1539
BspACI CCGC 3 cut(s) 531, 1142, 1445
BspANI GGCC 2 cut(s) 5, 137
BspCNI CTCAG 1 cut(s) 1531
BspFNI CGCG 1 cut(s) 1445
BspLI GGNNCC 4 cut(s) 1134, 1287, 1288, 1320
BspMAI CTGCAG 3 cut(s) 348, 354, 447
BspMI ACCTGC 1 cut(s) 907
BspPI GGATC 3 cut(s) 81, 452, 750
BspT107I GGYRCC 1 cut(s) 1132
BspTNI GGTCTC 2 cut(s) 324, 512
BsrDI GCAATG 1 cut(s) 195
BsrFI RCCGGY 1 cut(s) 1557
BsrGI TGTACA 1 cut(s) 264
BsrI ACTGG 3 cut(s) 252, 495, 1029
BssAI RCCGGY 1 cut(s) 1557
BssECI CCNNGG 3 cut(s) 6, 1352, 1361
Bst2UI CCWGG 3 cut(s) 8, 1353, 1504
Bst4CI ACNGT 3 cut(s) 401, 550, 1156
Bst6I CTCTTC 1 cut(s) 1337
BstAUI TGTACA 1 cut(s) 264
BstC8I GCNNGC 1 cut(s) 357
BstDEI CTNAG 3 cut(s) 653, 953, 1539
BstFNI CGCG 1 cut(s) 1445
BstHHI GCGC 1 cut(s) 1445
BstMAI GTCTC 4 cut(s) 185, 324, 512, 1058
BstMWI GCNNNNNNNGC 1 cut(s) 352
BstNI CCWGG 3 cut(s) 8, 1353, 1504
BstPAI GACNNNNGTC 1 cut(s) 1203
BstSCI CCNGG 3 cut(s) 6, 1351, 1502
BstSFI CTRYAG 3 cut(s) 344, 350, 443
BstUI CGCG 1 cut(s) 1445
BstV1I GCAGC 7 cut(s) 263, 336, 358, 364, 457, 605, 1024
BstV2I GAAGAC 2 cut(s) 717, 1340
BstX2I RGATCY 3 cut(s) 86, 742, 939
BstYI RGATCY 3 cut(s) 86, 742, 939
BsuRI GGCC 2 cut(s) 5, 137
BtsI GCAGTG 2 cut(s) 42, 1494
BtsIMutI CAGTG 3 cut(s) 42, 1022, 1494
BveI ACCTGC 1 cut(s) 907
Cac8I GCNNGC 1 cut(s) 357
CfoI GCGC 1 cut(s) 1445
Cfr10I RCCGGY 1 cut(s) 1557
Cfr13I GGNCC 4 cut(s) 4, 831, 1286, 1318
Csp6I GTAC 5 cut(s) 265, 905, 962, 1133, 1498
CviAII CATG 2 cut(s) 191, 280
CviQI GTAC 5 cut(s) 265, 905, 962, 1133, 1498
DdeI CTNAG 3 cut(s) 653, 953, 1539
Eam1104I CTCTTC 1 cut(s) 1337
EarI CTCTTC 1 cut(s) 1337
Ecl136II GAGCTC 1 cut(s) 1543
Eco24I GRGCYC 1 cut(s) 1545
Eco31I GGTCTC 2 cut(s) 324, 512
Eco47I GGWCC 3 cut(s) 831, 1286, 1318
Eco53kI GAGCTC 1 cut(s) 1543
Eco57I CTGAAG 4 cut(s) 452, 519, 1238, 1406
Eco88I CYCGRG 1 cut(s) 57
EcoICRI GAGCTC 1 cut(s) 1543
EcoO109I RGGNCCY 1 cut(s) 1286
EcoRII CCWGG 3 cut(s) 6, 1351, 1502
EcoT38I GRGCYC 1 cut(s) 1545
FaeI CATG 2 cut(s) 194, 283
FaqI GGGAC 1 cut(s) 1299
FatI CATG 2 cut(s) 190, 279
FauNDI CATATG 1 cut(s) 102
FblI GTMKAC 1 cut(s) 641
Fnu4HI GCNGC 7 cut(s) 277, 347, 350, 353, 446, 594, 1013
FriOI GRGCYC 1 cut(s) 1545
Fsp4HI GCNGC 7 cut(s) 277, 347, 350, 353, 446, 594, 1013
FspBI CTAG 9 cut(s) 116, 335, 390, 476, 686, 761, 800, 1109, 1508
GlaI GCGC 1 cut(s) 1444
GluI GCNGC 7 cut(s) 277, 347, 350, 353, 446, 594, 1013
GsuI CTGGAG 4 cut(s) 29, 512, 1196, 1486
HaeIII GGCC 2 cut(s) 5, 137
HapII CCGG 1 cut(s) 1558
HhaI GCGC 1 cut(s) 1445
Hin1II CATG 2 cut(s) 194, 283
Hin6I GCGC 1 cut(s) 1443
HinP1I GCGC 1 cut(s) 1443
HincII GTYRAC 2 cut(s) 642, 1104
HindII GTYRAC 2 cut(s) 642, 1104
HpaII CCGG 1 cut(s) 1558
HphI GGTGA 4 cut(s) 1139, 1208, 1318, 1537
Hpy166II GTNNAC 5 cut(s) 67, 642, 905, 1104, 1450
Hpy188I TCNGA 6 cut(s) 79, 86, 668, 1209, 1281, 1583
Hpy8I GTNNAC 5 cut(s) 67, 642, 905, 1104, 1450
Hpy99I CGWCG 3 cut(s) 1063, 1300, 1318
HpyCH4III ACNGT 3 cut(s) 401, 550, 1156
HpyCH4IV ACGT 2 cut(s) 1029, 1421
HpyCH4V TGCA 9 cut(s) 35, 279, 346, 352, 445, 778, 916, 1022, 1220
HpyF10VI GCNNNNNNNGC 1 cut(s) 352
HpyF3I CTNAG 3 cut(s) 653, 953, 1539
HpySE526I ACGT 2 cut(s) 1029, 1421
Hsp92II CATG 2 cut(s) 194, 283
HspAI GCGC 1 cut(s) 1443
KflI GGGWCCC 1 cut(s) 1286
KpnI GGTACC 1 cut(s) 1136
LmnI GCTCC 3 cut(s) 493, 1334, 1381
Lsp1109I GCAGC 7 cut(s) 263, 336, 358, 364, 457, 605, 1024
LweI GCATC 4 cut(s) 1027, 1045, 1347, 1616
MaeI CTAG 9 cut(s) 116, 335, 390, 476, 686, 761, 800, 1109, 1508
MaeII ACGT 2 cut(s) 1029, 1421
MaeIII GTNAC 4 cut(s) 401, 486, 1196, 1373
MfeI CAATTG 1 cut(s) 1215
MflI RGATCY 3 cut(s) 86, 742, 939
MhlI GDGCHC 2 cut(s) 815, 1545
MluCI AATT 7 cut(s) 173, 308, 383, 872, 981, 1074, 1215
MlyI GAGTC 7 cut(s) 91, 128, 187, 890, 1099, 1193, 1354
MmeI TCCRAC 1 cut(s) 1138
MseI TTAA 7 cut(s) 14, 125, 380, 647, 675, 695, 1073
MspA1I CMGCKG 1 cut(s) 349
MspI CCGG 1 cut(s) 1558
MspR9I CCNGG 3 cut(s) 8, 1353, 1504
MunI CAATTG 1 cut(s) 1215
Mva1269I GAATGC 2 cut(s) 432, 780
MvaI CCWGG 3 cut(s) 8, 1353, 1504
MvnI CGCG 1 cut(s) 1445
MwoI GCNNNNNNNGC 1 cut(s) 352
NdeI CATATG 1 cut(s) 102
NlaIII CATG 2 cut(s) 194, 283
NlaIV GGNNCC 4 cut(s) 1134, 1287, 1288, 1320
NmeAIII GCCGAG 1 cut(s) 1386
NmuCI GTSAC 2 cut(s) 401, 1196
PaeR7I CTCGAG 1 cut(s) 57
PaqCI CACCTGC 1 cut(s) 907
PcsI WCGNNNNNNNCGW 3 cut(s) 55, 521, 1319
PctI GAATGC 2 cut(s) 432, 780
PfeI GAWTC 3 cut(s) 141, 509, 581
PkrI GCNGC 7 cut(s) 278, 348, 351, 354, 447, 595, 1014
PleI GAGTC 7 cut(s) 91, 127, 186, 889, 1099, 1193, 1353
PpsI GAGTC 7 cut(s) 91, 127, 186, 889, 1099, 1193, 1353
PpuMI RGGWCCY 1 cut(s) 1286
PshAI GACNNNNGTC 1 cut(s) 1203
PshBI ATTAAT 1 cut(s) 1073
Psp124BI GAGCTC 1 cut(s) 1545
Psp5II RGGWCCY 1 cut(s) 1286
Psp6I CCWGG 3 cut(s) 6, 1351, 1502
PspGI CCWGG 3 cut(s) 6, 1351, 1502
PspN4I GGNNCC 4 cut(s) 1134, 1287, 1288, 1320
PspPI GGNCC 4 cut(s) 4, 831, 1286, 1318
PspPPI RGGWCCY 1 cut(s) 1286
PsrI GAACNNNNNNTAC 2 cut(s) 786, 818
PstI CTGCAG 3 cut(s) 348, 354, 447
PsuI RGATCY 3 cut(s) 86, 742, 939
PvuII CAGCTG 1 cut(s) 349
RsaI GTAC 5 cut(s) 266, 906, 963, 1134, 1499
RsaNI GTAC 5 cut(s) 265, 905, 962, 1133, 1498
SacI GAGCTC 1 cut(s) 1545
SalI GTCGAC 1 cut(s) 640
SaqAI TTAA 7 cut(s) 14, 125, 380, 647, 675, 695, 1073
SatI GCNGC 7 cut(s) 277, 347, 350, 353, 446, 594, 1013
Sau96I GGNCC 4 cut(s) 4, 831, 1286, 1318
ScaI AGTACT 1 cut(s) 1499
SchI GAGTC 7 cut(s) 91, 128, 187, 890, 1099, 1193, 1354
ScrFI CCNGG 3 cut(s) 8, 1353, 1504
SduI GDGCHC 2 cut(s) 815, 1545
SfaNI GCATC 4 cut(s) 1027, 1045, 1347, 1616
SfcI CTRYAG 3 cut(s) 344, 350, 443
Sfr274I CTCGAG 1 cut(s) 57
SinI GGWCC 3 cut(s) 831, 1286, 1318
SlaI CTCGAG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 57
SmoI CTYRAG 1 cut(s) 57
Sse9I AATT 7 cut(s) 173, 308, 383, 872, 981, 1074, 1215
SsiI CCGC 3 cut(s) 531, 1142, 1445
SspMI CTAG 9 cut(s) 116, 335, 390, 476, 686, 761, 800, 1109, 1508
SstI GAGCTC 1 cut(s) 1545
StyD4I CCNGG 3 cut(s) 6, 1351, 1502
TaaI ACNGT 3 cut(s) 401, 550, 1156
TaiI ACGT 2 cut(s) 1032, 1424
TaqI TCGA 7 cut(s) 58, 148, 222, 324, 524, 641, 1590
TaqII GACCGA 1 cut(s) 673
TasI AATT 7 cut(s) 173, 308, 383, 872, 981, 1074, 1215
TatI WGTACW 3 cut(s) 264, 904, 1497
TfiI GAWTC 3 cut(s) 141, 509, 581
Tru1I TTAA 7 cut(s) 14, 125, 380, 647, 675, 695, 1073
Tru9I TTAA 7 cut(s) 14, 125, 380, 647, 675, 695, 1073
TscAI CASTG 3 cut(s) 42, 1029, 1494
TseFI GTSAC 2 cut(s) 401, 1196
TseI GCWGC 7 cut(s) 276, 346, 349, 352, 445, 593, 1012
Tsp45I GTSAC 2 cut(s) 401, 1196
TspGWI ACGGA 3 cut(s) 530, 1076, 1331
TspRI CASTG 3 cut(s) 42, 1029, 1494
VpaK11BI GGWCC 3 cut(s) 831, 1286, 1318
VspI ATTAAT 1 cut(s) 1073
XbaI TCTAGA 2 cut(s) 115, 685
XhoI CTCGAG 1 cut(s) 57
XmiI GTMKAC 1 cut(s) 641
XspI CTAG 9 cut(s) 116, 335, 390, 476, 686, 761, 800, 1109, 1508
ZrmI AGTACT 1 cut(s) 1499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.