Rw7G022530

Protein of unknown function (DUF760)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0014092
Physical Location & Seq
Reverse (-)
26593753 .. 26597636
3884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G022530.1

Sequence Viewer

Length: 1209 bp
ATGCAGGTCTCAGGTGTCATCGGCGACGTTTCACTGGTAATTCCCTCAGGCGGAGGTCTCCGGTCGCCGGAATTCCGACACTTCCACTCCCCACCTACACCCATTCACACTCGCTCTCTGATTCCAAGTCATTCATTTCCGAGTTGTCTCCCAAAGCCTGGAAATGGACTGTATAAGTGCCCAGCCAGAGGCTTGATTGTGAGAGCATCGGAGGATTCAAGTGATAATTTGGTGCCGGTTGCTCCTCTTCAGTTTGAATCCCCTGCTGGCCAGCTTTTGGGCCAAATACTACAAACACATCCACATCTACTACCTGCAGCTGTTGATCAGCAGCTTGAGAAACTTCAAACTGATAGAGATGCCAAAAAAGAAGAATCTCCAACATCTAAAGGTCCCCTTTACAAGAGAATAGCTGAGGTCAAAGAGAAAGAAAGGCGAGCGGCACTGCAAGAGATAATATACTGCTTAATAGTGCAAAAGTTTGTGGAGAATGAAATCTCAATGATCCCCAAGATATCAGCAACCTCGGATCCTACCGGCAGAGTGGATTTTTGGCCGAACCAAGAACAAAAACTAGAATCTGTTCATTCTTCCGAAGCATTTGAGATGATACAGAGCCACTTGTCTCTTGTGCTTGGAGAACGACTTGTCGGCGTGGGTCCCCTTTCTTCCTTGGTTGAGATTAGCAAAATAAAACTTGGAAAGCTGTATGCTGCTTCAATAATGTATGGATATTTCCTCAAAAGAGTTGATCAGCGGTTTCAGCTTGAGAGAACCATGAACATCCTTCCAAAACGCGTTACTCAGGATCCGGATCCGGCACCAGCAAACCAGCTATGGGATCCTGATTCCTTGTTCAGGATACCTCCTGATGGTGGTGATGAAGCAGGCTTCATGGATAATGGGGAAAGCAAGTCTTATCGACTGAGATCCTATGTGATGTACTTGGATGCAGAGACTCTTCAGAGATATGCTACTATGAGGTCCAAGGAAGCTATTTCTTTGATTGAAAACCAGACGCAAGCCCTGTTTGGGAAACCTGACATCAGGGTTGCTGGGGATGGTTCAATTGATACATCCAACGATGAAGTGATTTCACTTACTTTCACTGGATTGACAATGCTAGTATTGGAAGCTGTTGCATTTGGATCATTCCTGTGGGATGCTGAAACCTATGTTGAATCCAAATATAACTTTGTCCAAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF760

Protein Analysis

402

Amino Acids

44.66

Weight (kDa)

5.61

Isoelectric Point (pI)

48.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF760 PF05542 133 - 260 3.1e-20 Protein of unknown function (DUF760)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32160
fragaria_vesca FvH4_5g23190
malus_domestica MD06G1027100.v1.1 MD16G1279100.v1.1
prunus_persica Prupe.5G027900_v2.0.a1 Prupe.5G027900_v2.0.a1
pyrus_communis pycom06g02220
rosa_chinensis RchiOBHm_Chr7g0212111
rosa_laevigata RLG00000002934
rosa_multiflora Rmu_sc0002283.1_g000040
rosa_roxburghii Rroxscaffold_3G00247130
rosa_rugosa Rorug07G0131000
rosa_samantha Rh7AG264000 Rh7BG257700 Rh7CG280500 Rh7DG270500
rosa_wichuraiana Rw7G022530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 322
AccB1I GGYRCC 2 cut(s) 232, 820
AccB7I CCANNNNNTGG 2 cut(s) 158, 277
AccBSI CCGCTC 1 cut(s) 440
AccII CGCG 1 cut(s) 798
AccIII TCCGGA 1 cut(s) 811
AciI CCGC 3 cut(s) 51, 440, 757
AcoI YGGCCR 2 cut(s) 268, 554
AcsI RAATTY 1 cut(s) 71
AcuI CTGAAG 2 cut(s) 233, 947
AfaI GTAC 1 cut(s) 944
AflIII ACRYGT 1 cut(s) 796
AgsI TTSAA 7 cut(s) 219, 257, 347, 720, 1010, 1068, 1181
AjnI CCWGG 1 cut(s) 157
Alw26I GTCTC 5 cut(s) 13, 62, 152, 630, 950
Aor13HI TCCGGA 1 cut(s) 811
AoxI GGCC 3 cut(s) 268, 280, 554
ApeKI GCWGC 3 cut(s) 317, 331, 713
ApoI RAATTY 1 cut(s) 71
Asp700I GAANNNNTTC 1 cut(s) 582
AspS9I GGNCC 4 cut(s) 280, 392, 659, 984
AsuHPI GGTGA 1 cut(s) 890
AvaII GGWCC 3 cut(s) 392, 659, 984
AxyI CCTNAGG 1 cut(s) 46
BaeGI GKGCMC 1 cut(s) 182
BalI TGGCCA 1 cut(s) 270
BamHI GGATCC 4 cut(s) 529, 808, 814, 841
BanI GGYRCC 2 cut(s) 232, 820
BbvCI CCTCAGC 1 cut(s) 414
BbvI GCAGC 3 cut(s) 329, 343, 700
BccI CCATC 2 cut(s) 866, 1055
BciT130I CCWGG 1 cut(s) 159
BciVI GTATCC 1 cut(s) 855
BclI TGATCA 2 cut(s) 325, 751
BcoDI GTCTC 5 cut(s) 13, 62, 152, 630, 950
BfaI CTAG 3 cut(s) 575, 1124, 1207
BfmI CTRYAG 1 cut(s) 315
BfuAI ACCTGC 1 cut(s) 322
BfuI GTATCC 1 cut(s) 855
BisI GCNGC 4 cut(s) 318, 332, 441, 714
BlsI GCNGC 4 cut(s) 319, 333, 442, 715
Bme1390I CCNGG 1 cut(s) 159
Bme18I GGWCC 3 cut(s) 392, 659, 984
BmgT120I GGNCC 4 cut(s) 280, 392, 659, 984
BmiI GGNNCC 9 cut(s) 234, 394, 531, 660, 661, 810, 816, 822, 843
BmrFI CCNGG 1 cut(s) 159
BmsI GCATC 4 cut(s) 215, 349, 940, 1153
Bpu10I CCTNAGC 1 cut(s) 414
BpuEI CTTGAG 2 cut(s) 356, 788
BsaBI GATNNNNATC 1 cut(s) 813
BsaI GGTCTC 2 cut(s) 13, 62
BsaJI CCNNGG 3 cut(s) 525, 672, 987
BsaWI WCCGGW 2 cut(s) 60, 811
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bse118I RCCGGY 2 cut(s) 235, 536
Bse1I ACTGG 2 cut(s) 39, 1114
Bse21I CCTNAGG 1 cut(s) 46
Bse8I GATNNNNATC 1 cut(s) 813
BseAI TCCGGA 1 cut(s) 811
BseBI CCWGG 1 cut(s) 159
BseDI CCNNGG 3 cut(s) 525, 672, 987
BseGI GGATG 6 cut(s) 298, 783, 955, 1066, 1076, 1168
BseJI GATNNNNATC 1 cut(s) 813
BseMII CTCAG 5 cut(s) 24, 60, 405, 818, 917
BseNI ACTGG 2 cut(s) 39, 1114
BseRI GAGGAG 1 cut(s) 234
BseSI GKGCMC 1 cut(s) 182
BseXI GCAGC 3 cut(s) 329, 343, 700
BseYI CCCAGC 2 cut(s) 181, 1055
Bsh1236I CGCG 1 cut(s) 798
Bsh1285I CGRYCG 1 cut(s) 65
BshFI GGCC 3 cut(s) 270, 282, 556
BshNI GGYRCC 2 cut(s) 232, 820
BsiEI CGRYCG 1 cut(s) 65
BsiSI CCGG 6 cut(s) 61, 68, 236, 537, 812, 818
BslFI GGGAC 2 cut(s) 378, 645
BsmAI GTCTC 5 cut(s) 13, 62, 152, 630, 950
BsmFI GGGAC 2 cut(s) 378, 645
BsnI GGCC 3 cut(s) 270, 282, 556
Bso31I GGTCTC 2 cut(s) 13, 62
Bsp1286I GDGCHC 1 cut(s) 182
Bsp13I TCCGGA 1 cut(s) 811
Bsp143I GATC 9 cut(s) 325, 504, 529, 751, 808, 814, 841, 929, 1148
BspACI CCGC 3 cut(s) 51, 440, 757
BspANI GGCC 3 cut(s) 270, 282, 556
BspCNI CTCAG 5 cut(s) 23, 59, 406, 817, 918
BspEI TCCGGA 1 cut(s) 811
BspFNI CGCG 1 cut(s) 798
BspLI GGNNCC 9 cut(s) 234, 394, 531, 660, 661, 810, 816, 822, 843
BspMAI CTGCAG 1 cut(s) 319
BspMI ACCTGC 1 cut(s) 322
BspT107I GGYRCC 2 cut(s) 232, 820
BspTNI GGTCTC 2 cut(s) 13, 62
BsrBI CCGCTC 1 cut(s) 440
BsrFI RCCGGY 2 cut(s) 235, 536
BsrI ACTGG 2 cut(s) 39, 1114
BssAI RCCGGY 2 cut(s) 235, 536
BssECI CCNNGG 3 cut(s) 525, 672, 987
BssMI GATC 9 cut(s) 325, 504, 529, 751, 808, 814, 841, 929, 1148
BssT1I CCWWGG 2 cut(s) 672, 987
Bst2UI CCWGG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 171
Bst6I CTCTTC 2 cut(s) 252, 966
BstC8I GCNNGC 5 cut(s) 268, 272, 438, 889, 1023
BstDEI CTNAG 5 cut(s) 10, 46, 414, 804, 926
BstENI CCTNNNNNAGG 1 cut(s) 856
BstF5I GGATG 6 cut(s) 298, 783, 955, 1066, 1076, 1168
BstFNI CGCG 1 cut(s) 798
BstKTI GATC 9 cut(s) 328, 507, 532, 754, 811, 817, 844, 932, 1151
BstMAI GTCTC 5 cut(s) 13, 62, 152, 630, 950
BstMBI GATC 9 cut(s) 325, 504, 529, 751, 808, 814, 841, 929, 1148
BstMCI CGRYCG 1 cut(s) 65
BstMWI GCNNNNNNNGC 1 cut(s) 763
BstNI CCWGG 1 cut(s) 159
BstSCI CCNGG 1 cut(s) 157
BstSFI CTRYAG 1 cut(s) 315
BstSLI GKGCMC 1 cut(s) 182
BstUI CGCG 1 cut(s) 798
BstV1I GCAGC 3 cut(s) 329, 343, 700
BstX2I RGATCY 5 cut(s) 529, 808, 814, 841, 929
BstYI RGATCY 5 cut(s) 529, 808, 814, 841, 929
Bsu36I CCTNAGG 1 cut(s) 46
BsuI GTATCC 1 cut(s) 855
BsuRI GGCC 3 cut(s) 270, 282, 556
BtsCI GGATG 6 cut(s) 298, 783, 955, 1066, 1076, 1168
BtsI GCAGTG 1 cut(s) 443
BtsIMutI CAGTG 3 cut(s) 32, 443, 1107
BveI ACCTGC 1 cut(s) 322
Cac8I GCNNGC 5 cut(s) 268, 272, 438, 889, 1023
Cfr10I RCCGGY 2 cut(s) 235, 536
Cfr13I GGNCC 4 cut(s) 280, 392, 659, 984
CseI GACGC 1 cut(s) 1027
Csp6I GTAC 1 cut(s) 943
CviAII CATG 2 cut(s) 778, 895
CviQI GTAC 1 cut(s) 943
DdeI CTNAG 5 cut(s) 10, 46, 414, 804, 926
DpnI GATC 9 cut(s) 327, 506, 531, 753, 810, 816, 843, 931, 1150
DpnII GATC 9 cut(s) 325, 504, 529, 751, 808, 814, 841, 929, 1148
EaeI YGGCCR 2 cut(s) 268, 554
Eam1104I CTCTTC 2 cut(s) 252, 966
EarI CTCTTC 2 cut(s) 252, 966
EciI GGCGGA 1 cut(s) 66
Eco130I CCWWGG 2 cut(s) 672, 987
Eco31I GGTCTC 2 cut(s) 13, 62
Eco32I GATATC 1 cut(s) 516
Eco47I GGWCC 3 cut(s) 392, 659, 984
Eco57I CTGAAG 2 cut(s) 233, 947
Eco81I CCTNAGG 1 cut(s) 46
EcoNI CCTNNNNNAGG 1 cut(s) 856
EcoO109I RGGNCCY 2 cut(s) 392, 659
EcoRI GAATTC 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 157
EcoRV GATATC 1 cut(s) 516
EcoT14I CCWWGG 2 cut(s) 672, 987
ErhI CCWWGG 2 cut(s) 672, 987
FaeI CATG 2 cut(s) 781, 898
FalI AAGNNNNNCTT 4 cut(s) 381, 413, 901, 933
FaqI GGGAC 2 cut(s) 378, 645
FatI CATG 2 cut(s) 777, 894
FbaI TGATCA 2 cut(s) 325, 751
Fnu4HI GCNGC 4 cut(s) 318, 332, 441, 714
FokI GGATG 6 cut(s) 285, 770, 962, 1063, 1073, 1175
Fsp4HI GCNGC 4 cut(s) 318, 332, 441, 714
FspBI CTAG 3 cut(s) 575, 1124, 1207
GluI GCNGC 4 cut(s) 318, 332, 441, 714
GsaI CCCAGC 2 cut(s) 185, 1059
HaeIII GGCC 3 cut(s) 270, 282, 556
HapII CCGG 6 cut(s) 61, 68, 236, 537, 812, 818
HgaI GACGC 1 cut(s) 1027
Hin1II CATG 2 cut(s) 781, 898
HinfI GANTC 8 cut(s) 121, 215, 257, 374, 578, 848, 958, 1181
HpaII CCGG 6 cut(s) 61, 68, 236, 537, 812, 818
HphI GGTGA 1 cut(s) 890
Hpy188I TCNGA 7 cut(s) 77, 120, 141, 211, 529, 595, 966
Hpy188III TCNNGA 5 cut(s) 806, 812, 845, 859, 869
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 1 cut(s) 797
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 6 cut(s) 4, 317, 448, 475, 953, 1142
HpyF10VI GCNNNNNNNGC 1 cut(s) 763
HpyF3I CTNAG 5 cut(s) 10, 46, 414, 804, 926
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 2 cut(s) 781, 898
KflI GGGWCCC 1 cut(s) 659
Kpn2I TCCGGA 1 cut(s) 811
Ksp22I TGATCA 2 cut(s) 325, 751
Kzo9I GATC 9 cut(s) 325, 504, 529, 751, 808, 814, 841, 929, 1148
LmnI GCTCC 1 cut(s) 247
Lsp1109I GCAGC 3 cut(s) 329, 343, 700
LweI GCATC 4 cut(s) 215, 349, 940, 1153
MaeI CTAG 3 cut(s) 575, 1124, 1207
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 799
MalI GATC 9 cut(s) 327, 506, 531, 753, 810, 816, 843, 931, 1150
MbiI CCGCTC 1 cut(s) 440
MboI GATC 9 cut(s) 325, 504, 529, 751, 808, 814, 841, 929, 1148
MboII GAAGA 5 cut(s) 239, 383, 582, 660, 953
MfeI CAATTG 1 cut(s) 1068
MflI RGATCY 5 cut(s) 529, 808, 814, 841, 929
MhlI GDGCHC 1 cut(s) 182
MlsI TGGCCA 1 cut(s) 270
MluCI AATT 4 cut(s) 39, 71, 226, 1068
MluI ACGCGT 1 cut(s) 796
MluNI TGGCCA 1 cut(s) 270
MlyI GAGTC 1 cut(s) 952
MmeI TCCRAC 3 cut(s) 100, 404, 1104
Mox20I TGGCCA 1 cut(s) 270
MroI TCCGGA 1 cut(s) 811
MroXI GAANNNNTTC 1 cut(s) 582
MscI TGGCCA 1 cut(s) 270
MseI TTAA 1 cut(s) 467
MslI CAYNNNNRTG 1 cut(s) 1156
Msp20I TGGCCA 1 cut(s) 270
MspA1I CMGCKG 2 cut(s) 320, 757
MspI CCGG 6 cut(s) 61, 68, 236, 537, 812, 818
MspR9I CCNGG 1 cut(s) 159
MunI CAATTG 1 cut(s) 1068
MvaI CCWGG 1 cut(s) 159
MvnI CGCG 1 cut(s) 798
MwoI GCNNNNNNNGC 1 cut(s) 763
NdeII GATC 9 cut(s) 325, 504, 529, 751, 808, 814, 841, 929, 1148
NlaIII CATG 2 cut(s) 781, 898
NlaIV GGNNCC 9 cut(s) 234, 394, 531, 660, 661, 810, 816, 822, 843
PdmI GAANNNNTTC 1 cut(s) 582
PfeI GAWTC 7 cut(s) 121, 215, 257, 374, 578, 848, 1181
PflMI CCANNNNNTGG 2 cut(s) 158, 277
PkrI GCNGC 4 cut(s) 319, 333, 442, 715
PleI GAGTC 1 cut(s) 952
PpsI GAGTC 1 cut(s) 952
PpuMI RGGWCCY 2 cut(s) 392, 659
Psp5II RGGWCCY 2 cut(s) 392, 659
Psp6I CCWGG 1 cut(s) 157
PspFI CCCAGC 2 cut(s) 181, 1055
PspGI CCWGG 1 cut(s) 157
PspN4I GGNNCC 9 cut(s) 234, 394, 531, 660, 661, 810, 816, 822, 843
PspPI GGNCC 4 cut(s) 280, 392, 659, 984
PspPPI RGGWCCY 2 cut(s) 392, 659
PstI CTGCAG 1 cut(s) 319
PsuI RGATCY 5 cut(s) 529, 808, 814, 841, 929
PvuII CAGCTG 1 cut(s) 320
RsaI GTAC 1 cut(s) 944
RsaNI GTAC 1 cut(s) 943
RseI CAYNNNNRTG 1 cut(s) 1156
SaqAI TTAA 1 cut(s) 467
SatI GCNGC 4 cut(s) 318, 332, 441, 714
Sau3AI GATC 9 cut(s) 325, 504, 529, 751, 808, 814, 841, 929, 1148
Sau96I GGNCC 4 cut(s) 280, 392, 659, 984
SchI GAGTC 1 cut(s) 952
ScrFI CCNGG 1 cut(s) 159
SduI GDGCHC 1 cut(s) 182
SfaNI GCATC 4 cut(s) 215, 349, 940, 1153
SfcI CTRYAG 1 cut(s) 315
SinI GGWCC 3 cut(s) 392, 659, 984
SmiMI CAYNNNNRTG 1 cut(s) 1156
SmlI CTYRAG 2 cut(s) 335, 767
SmoI CTYRAG 2 cut(s) 335, 767
Sse9I AATT 4 cut(s) 39, 71, 226, 1068
SsiI CCGC 3 cut(s) 51, 440, 757
SspMI CTAG 3 cut(s) 575, 1124, 1207
StyD4I CCNGG 1 cut(s) 157
StyI CCWWGG 2 cut(s) 672, 987
TaaI ACNGT 1 cut(s) 171
TaiI ACGT 1 cut(s) 30
TaqI TCGA 1 cut(s) 922
TasI AATT 4 cut(s) 39, 71, 226, 1068
TatI WGTACW 1 cut(s) 942
TauI GCSGC 1 cut(s) 443
TfiI GAWTC 7 cut(s) 121, 215, 257, 374, 578, 848, 1181
Tru1I TTAA 1 cut(s) 467
Tru9I TTAA 1 cut(s) 467
TscAI CASTG 3 cut(s) 39, 450, 1114
TseI GCWGC 3 cut(s) 317, 331, 713
TspDTI ATGAA 7 cut(s) 123, 507, 575, 794, 883, 897, 1101
TspRI CASTG 3 cut(s) 39, 450, 1114
Van91I CCANNNNNTGG 2 cut(s) 158, 277
VpaK11BI GGWCC 3 cut(s) 392, 659, 984
XagI CCTNNNNNAGG 1 cut(s) 856
XapI RAATTY 1 cut(s) 71
XmnI GAANNNNTTC 1 cut(s) 582
XspI CTAG 3 cut(s) 575, 1124, 1207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.