MD16G1279100.v1.1

Protein of unknown function (DUF760)

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
37898635 .. 37900144
1510 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1279100.v1.1.491

Sequence Viewer

Length: 330 bp
ATGATCAAGTATCTAAAAGTTGCTGTTATCATATTTCCTTTCATACTTTATGGGGAAGCTTTCGGTTTATCCTTCATGAGTTCTTACGGCAATCCTTGCTTCATTATACATATCCTTACGGCAGTTGATTTTTGGCCAAACCAAGAAAATAAAATAGAATCTATTCATTCTCCTGAAGCATACGAGATGATACAGAGCCACTTATCCCTTGCTTTTAGTGAACTTGTGGGACCCCTTTCTTCCATGGTTGAGATTAGTAAAATAAAACTTGAGAGAACCATAAACACTTTTCCTAAGGGTTTCACTCCAAATCCAGCACCAAGAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

110

Amino Acids

12.32

Weight (kDa)

6.26

Isoelectric Point (pI)

45.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32160
fragaria_vesca FvH4_5g23190
malus_domestica MD06G1027100.v1.1 MD16G1279100.v1.1
prunus_persica Prupe.5G027900_v2.0.a1 Prupe.5G027900_v2.0.a1
pyrus_communis pycom06g02220
rosa_chinensis RchiOBHm_Chr7g0212111
rosa_laevigata RLG00000002934
rosa_multiflora Rmu_sc0002283.1_g000040
rosa_roxburghii Rroxscaffold_3G00247130
rosa_rugosa Rorug07G0131000
rosa_samantha Rh7AG264000 Rh7BG257700 Rh7CG280500 Rh7DG270500
rosa_wichuraiana Rw7G022530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 134
AcuI CTGAAG 1 cut(s) 195
AluBI AGCT 1 cut(s) 59
AluI AGCT 1 cut(s) 59
AoxI GGCC 1 cut(s) 134
Asp700I GAANNNNTTC 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 230
AvaII GGWCC 1 cut(s) 230
AxyI CCTNAGG 1 cut(s) 294
BalI TGGCCA 1 cut(s) 136
BceAI ACGGC 2 cut(s) 103, 135
BclI TGATCA 1 cut(s) 3
BfaI CTAG 1 cut(s) 328
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 2 cut(s) 231, 232
BpuEI CTTGAG 1 cut(s) 290
BsaJI CCNNGG 1 cut(s) 243
Bse21I CCTNAGG 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 243
BshFI GGCC 1 cut(s) 136
BslFI GGGAC 1 cut(s) 243
BsmFI GGGAC 1 cut(s) 243
BsnI GGCC 1 cut(s) 136
Bsp143I GATC 1 cut(s) 3
Bsp19I CCATGG 1 cut(s) 243
BspANI GGCC 1 cut(s) 136
BspHI TCATGA 1 cut(s) 75
BspLI GGNNCC 2 cut(s) 231, 232
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 1 cut(s) 3
BssT1I CCWWGG 1 cut(s) 243
BstAPI GCANNNNNTGC 1 cut(s) 96
BstDEI CTNAG 1 cut(s) 294
BstDSI CCRYGG 1 cut(s) 243
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 96
Bsu36I CCTNAGG 1 cut(s) 294
BsuRI GGCC 1 cut(s) 136
BtgI CCRYGG 1 cut(s) 243
CciI TCATGA 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 230
CviAII CATG 2 cut(s) 76, 244
CviJI RGCY 3 cut(s) 59, 136, 198
CviKI_1 RGCY 3 cut(s) 59, 136, 198
DdeI CTNAG 1 cut(s) 294
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
EaeI YGGCCR 1 cut(s) 134
Eco130I CCWWGG 1 cut(s) 243
Eco47I GGWCC 1 cut(s) 230
Eco57I CTGAAG 1 cut(s) 195
Eco81I CCTNAGG 1 cut(s) 294
EcoO109I RGGNCCY 1 cut(s) 230
EcoT14I CCWWGG 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 2 cut(s) 79, 247
FaiI YATR 9 cut(s) 32, 44, 51, 77, 107, 111, 181, 245, 281
FaqI GGGAC 1 cut(s) 243
FatI CATG 2 cut(s) 75, 243
FbaI TGATCA 1 cut(s) 3
FspBI CTAG 1 cut(s) 328
HaeIII GGCC 1 cut(s) 136
Hin1II CATG 2 cut(s) 79, 247
HindIII AAGCTT 1 cut(s) 57
HinfI GANTC 1 cut(s) 158
Hpy166II GTNNAC 1 cut(s) 221
Hpy188III TCNNGA 2 cut(s) 76, 173
Hpy8I GTNNAC 1 cut(s) 221
HpyAV CCTTC 1 cut(s) 82
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
HpyF3I CTNAG 1 cut(s) 294
Hsp92II CATG 2 cut(s) 79, 247
KflI GGGWCCC 1 cut(s) 230
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 1 cut(s) 186
MaeI CTAG 1 cut(s) 328
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 1 cut(s) 231
MlsI TGGCCA 1 cut(s) 136
MluNI TGGCCA 1 cut(s) 136
Mox20I TGGCCA 1 cut(s) 136
MroXI GAANNNNTTC 1 cut(s) 162
MscI TGGCCA 1 cut(s) 136
Msp20I TGGCCA 1 cut(s) 136
MwoI GCNNNNNNNGC 1 cut(s) 96
NcoI CCATGG 1 cut(s) 243
NdeII GATC 1 cut(s) 3
NlaIII CATG 2 cut(s) 79, 247
NlaIV GGNNCC 2 cut(s) 231, 232
PagI TCATGA 1 cut(s) 75
PdmI GAANNNNTTC 1 cut(s) 162
PfeI GAWTC 1 cut(s) 158
PpuMI RGGWCCY 1 cut(s) 230
Psp5II RGGWCCY 1 cut(s) 230
PspN4I GGNNCC 2 cut(s) 231, 232
PspPI GGNCC 1 cut(s) 230
PspPPI RGGWCCY 1 cut(s) 230
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 230
SetI ASST 1 cut(s) 61
SinI GGWCC 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
SspMI CTAG 1 cut(s) 328
StyI CCWWGG 1 cut(s) 243
TfiI GAWTC 1 cut(s) 158
TspDTI ATGAA 4 cut(s) 31, 64, 91, 155
VpaK11BI GGWCC 1 cut(s) 230
XmnI GAANNNNTTC 1 cut(s) 162
XspI CTAG 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.