Rroxscaffold_3G00247130

Protein of unknown function (DUF760)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0014092
Physical Location & Seq
Forward (+)
40448262 .. 40457647
9386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00247130.1

Sequence Viewer

Length: 1329 bp
ATGAGTGGGAAGGAGATGATTTGTGGAGCGCCGTCAAATAGTATGGAGGTTGATGTTTTGCCGGATTCTTGGGTGGAGGGACGAGGGAAGCGGAAGGGCCTCAAAATGCAGGTCTCAGGTGTCATCGGCGACGTTTCACTGGTAATTCCCTCAGGCGGAGGTCTCCGGTCGCCGGAATTCCGACACTTGCACTCCCACACCTACACCCATTCACACTCGCTCTCTGATTCCAAGTCATTCATTTCCAGTGGATTTTTCAGAAGTTGTCTCCCAAAGCCTGGAAATGGACTGTATAAGTGCCCAGCCAGAGGCTTGATTGTGAGAGCATCAGAGGATTCAAGTGAAAATTTGGTGCCAGTTGCTCCTCTTCAGTTTGAATCCCCTGCTGGCCAGCTTTTGGGCCAAATACTACAAACACATCCACATCTACTGCCTGCAGCTGTTGATCAGCAGCTCGAGAAACTTCAAACTGATAGAGATGCCAAAAAAGAAGAATCTCCAACATCTAAAGGTCCCCTTTACAAGAGAATAGCTGAGGTCAAAGAGAAAGAAAGGCGAGCGGCACTTCAAGAGATAATATACTGCTTAATAGTGCAAAAGTTTGTGGAGAATGAAATCTCAATGATCCCGAAGATATCAGCAACCTCGGATCCTACCGGCAGAGTGGATTTTTGGCCAAACCAAGAACAAAAACTAGAATCTGTTCATTCTTCCGAAGCATTTGAGATGATACAGAGCCACTTGTCTCTTGTGCTTGGAGAACGACTTGTCGGCGTGGGTCCCCTTTCTTCCTTGGTTGAGATTAGCAAAATAAAACTTGGAAAGCTGTATGCTGCTTCAATAATGTATGGATATTTCCTCAAAAGAGTTGATCAGCGGTTTCAGCTTGAGAGAACCATGAACATCCTTCCAAAACGCGTTACTCAGGATCCGGATCCGGCACCAGCAAACCAGCTATGGGATCCTGATTCCTTGTTCAGGATACCTCCTGATGGTGGTGATGAAGCAGGCTTCATGGATAATGGGGAAAGCAAGTCTTATCGACTGAGATCCTATGTGATGTACTTGGATGCAGAGACTCTTCAGAGATATGCTACCATAAGGTCCAAGGAAGCTATTTCTTTGATTGAAAATCAGACGCAAGCCCTGTTTGGGAAACCTGACATCAGGATTGCTGTGGATGGTTCAATTGATACATCCAACGATGAAGTGATTTCACTTACTTTCACTGGATTGACAATGCTAGTCTTGGAAGCTGTTGCATTTGGATCATTCCTGTGGGATGCTGAAACCTATGTTGAATCCAAATATAACTTTGTGCAAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF760

Protein Analysis

442

Amino Acids

49.1

Weight (kDa)

5.82

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF760 PF05542 173 - 300 2.4e-20 Protein of unknown function (DUF760)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32160
fragaria_vesca FvH4_5g23190
malus_domestica MD06G1027100.v1.1 MD16G1279100.v1.1
prunus_persica Prupe.5G027900_v2.0.a1 Prupe.5G027900_v2.0.a1
pyrus_communis pycom06g02220
rosa_chinensis RchiOBHm_Chr7g0212111
rosa_laevigata RLG00000002934
rosa_multiflora Rmu_sc0002283.1_g000040
rosa_roxburghii Rroxscaffold_3G00247130
rosa_rugosa Rorug07G0131000
rosa_samantha Rh7AG264000 Rh7BG257700 Rh7CG280500 Rh7DG270500
rosa_wichuraiana Rw7G022530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 100
AccB1I GGYRCC 2 cut(s) 352, 940
AccB7I CCANNNNNTGG 2 cut(s) 278, 397
AccBSI CCGCTC 1 cut(s) 560
AccII CGCG 1 cut(s) 918
AccIII TCCGGA 1 cut(s) 931
AciI CCGC 4 cut(s) 91, 156, 560, 877
AcoI YGGCCR 2 cut(s) 388, 674
AcsI RAATTY 2 cut(s) 176, 346
AcuI CTGAAG 2 cut(s) 353, 1067
AfaI GTAC 1 cut(s) 1064
AflIII ACRYGT 1 cut(s) 916
AgsI TTSAA 8 cut(s) 339, 377, 467, 569, 840, 1130, 1188, 1301
AjnI CCWGG 1 cut(s) 277
Alw26I GTCTC 5 cut(s) 118, 167, 272, 750, 1070
Ama87I CYCGRG 1 cut(s) 455
Aor13HI TCCGGA 1 cut(s) 931
AoxI GGCC 4 cut(s) 97, 388, 400, 674
ApeKI GCWGC 3 cut(s) 437, 451, 833
ApoI RAATTY 2 cut(s) 176, 346
ArsI GACNNNNNNTTYG 2 cut(s) 96, 128
Asp700I GAANNNNTTC 1 cut(s) 702
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 5 cut(s) 97, 400, 512, 779, 1104
AsuHPI GGTGA 1 cut(s) 1010
AvaI CYCGRG 1 cut(s) 455
AvaII GGWCC 3 cut(s) 512, 779, 1104
AxyI CCTNAGG 1 cut(s) 151
BaeGI GKGCMC 1 cut(s) 302
BalI TGGCCA 2 cut(s) 390, 676
BamHI GGATCC 4 cut(s) 649, 928, 934, 961
BanI GGYRCC 2 cut(s) 352, 940
BbvCI CCTCAGC 1 cut(s) 534
BbvI GCAGC 3 cut(s) 449, 463, 820
BccI CCATC 2 cut(s) 986, 1175
BceAI ACGGC 1 cut(s) 16
BciT130I CCWGG 1 cut(s) 279
BciVI GTATCC 1 cut(s) 975
BclI TGATCA 2 cut(s) 445, 871
BcoDI GTCTC 5 cut(s) 118, 167, 272, 750, 1070
BfaI CTAG 3 cut(s) 695, 1244, 1327
BfmI CTRYAG 1 cut(s) 435
BfoI RGCGCY 1 cut(s) 32
BfuAI ACCTGC 1 cut(s) 100
BfuI GTATCC 1 cut(s) 975
BisI GCNGC 4 cut(s) 438, 452, 561, 834
BlsI GCNGC 4 cut(s) 439, 453, 562, 835
Bme1390I CCNGG 1 cut(s) 279
Bme18I GGWCC 3 cut(s) 512, 779, 1104
BmeT110I CYCGRG 1 cut(s) 455
BmgT120I GGNCC 5 cut(s) 97, 400, 512, 779, 1104
BmiI GGNNCC 9 cut(s) 354, 514, 651, 780, 781, 930, 936, 942, 963
BmrFI CCNGG 1 cut(s) 279
BmsI GCATC 4 cut(s) 335, 469, 1060, 1273
Bpu10I CCTNAGC 1 cut(s) 534
BpuEI CTTGAG 1 cut(s) 908
BsaBI GATNNNNATC 1 cut(s) 933
BsaI GGTCTC 2 cut(s) 118, 167
BsaJI CCNNGG 3 cut(s) 645, 792, 1107
BsaWI WCCGGW 2 cut(s) 165, 931
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bse118I RCCGGY 1 cut(s) 656
Bse1I ACTGG 4 cut(s) 144, 246, 356, 1234
Bse21I CCTNAGG 1 cut(s) 151
Bse8I GATNNNNATC 1 cut(s) 933
BseAI TCCGGA 1 cut(s) 931
BseBI CCWGG 1 cut(s) 279
BseDI CCNNGG 3 cut(s) 645, 792, 1107
BseGI GGATG 6 cut(s) 418, 903, 1075, 1186, 1196, 1288
BseJI GATNNNNATC 1 cut(s) 933
BseMII CTCAG 5 cut(s) 129, 165, 525, 938, 1037
BseNI ACTGG 4 cut(s) 144, 246, 356, 1234
BseRI GAGGAG 1 cut(s) 354
BseSI GKGCMC 1 cut(s) 302
BseXI GCAGC 3 cut(s) 449, 463, 820
BseYI CCCAGC 1 cut(s) 301
Bsh1236I CGCG 1 cut(s) 918
Bsh1285I CGRYCG 1 cut(s) 170
BshFI GGCC 4 cut(s) 99, 390, 402, 676
BshNI GGYRCC 2 cut(s) 352, 940
BsiEI CGRYCG 1 cut(s) 170
BsiHKCI CYCGRG 1 cut(s) 455
BsiSI CCGG 6 cut(s) 62, 166, 173, 657, 932, 938
BslFI GGGAC 3 cut(s) 93, 498, 765
BsmAI GTCTC 5 cut(s) 118, 167, 272, 750, 1070
BsmFI GGGAC 3 cut(s) 93, 498, 765
BsnI GGCC 4 cut(s) 99, 390, 402, 676
Bso31I GGTCTC 2 cut(s) 118, 167
BsoBI CYCGRG 1 cut(s) 455
Bsp1286I GDGCHC 1 cut(s) 302
Bsp13I TCCGGA 1 cut(s) 931
Bsp143I GATC 9 cut(s) 445, 624, 649, 871, 928, 934, 961, 1049, 1268
BspACI CCGC 4 cut(s) 91, 156, 560, 877
BspANI GGCC 4 cut(s) 99, 390, 402, 676
BspCNI CTCAG 5 cut(s) 128, 164, 526, 937, 1038
BspEI TCCGGA 1 cut(s) 931
BspFNI CGCG 1 cut(s) 918
BspLI GGNNCC 9 cut(s) 354, 514, 651, 780, 781, 930, 936, 942, 963
BspMAI CTGCAG 1 cut(s) 439
BspMI ACCTGC 1 cut(s) 100
BspT107I GGYRCC 2 cut(s) 352, 940
BspTNI GGTCTC 2 cut(s) 118, 167
BsrBI CCGCTC 1 cut(s) 560
BsrFI RCCGGY 1 cut(s) 656
BsrI ACTGG 4 cut(s) 144, 246, 356, 1234
BssAI RCCGGY 1 cut(s) 656
BssECI CCNNGG 3 cut(s) 645, 792, 1107
BssMI GATC 9 cut(s) 445, 624, 649, 871, 928, 934, 961, 1049, 1268
BssT1I CCWWGG 2 cut(s) 792, 1107
Bst2UI CCWGG 1 cut(s) 279
Bst4CI ACNGT 1 cut(s) 291
Bst6I CTCTTC 2 cut(s) 372, 1086
BstC8I GCNNGC 6 cut(s) 388, 392, 435, 558, 1009, 1143
BstDEI CTNAG 5 cut(s) 115, 151, 534, 924, 1046
BstENI CCTNNNNNAGG 1 cut(s) 976
BstF5I GGATG 6 cut(s) 418, 903, 1075, 1186, 1196, 1288
BstFNI CGCG 1 cut(s) 918
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 9 cut(s) 448, 627, 652, 874, 931, 937, 964, 1052, 1271
BstMAI GTCTC 5 cut(s) 118, 167, 272, 750, 1070
BstMBI GATC 9 cut(s) 445, 624, 649, 871, 928, 934, 961, 1049, 1268
BstMCI CGRYCG 1 cut(s) 170
BstMWI GCNNNNNNNGC 1 cut(s) 883
BstNI CCWGG 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 277
BstSFI CTRYAG 1 cut(s) 435
BstSLI GKGCMC 1 cut(s) 302
BstUI CGCG 1 cut(s) 918
BstV1I GCAGC 3 cut(s) 449, 463, 820
BstX2I RGATCY 5 cut(s) 649, 928, 934, 961, 1049
BstYI RGATCY 5 cut(s) 649, 928, 934, 961, 1049
Bsu36I CCTNAGG 1 cut(s) 151
BsuI GTATCC 1 cut(s) 975
BsuRI GGCC 4 cut(s) 99, 390, 402, 676
BtsCI GGATG 6 cut(s) 418, 903, 1075, 1186, 1196, 1288
BtsIMutI CAGTG 3 cut(s) 137, 253, 1227
BveI ACCTGC 1 cut(s) 100
Cac8I GCNNGC 6 cut(s) 388, 392, 435, 558, 1009, 1143
CfoI GCGC 1 cut(s) 31
Cfr10I RCCGGY 1 cut(s) 656
Cfr13I GGNCC 5 cut(s) 97, 400, 512, 779, 1104
CseI GACGC 1 cut(s) 1147
Csp6I GTAC 1 cut(s) 1063
CviAII CATG 2 cut(s) 898, 1015
CviQI GTAC 1 cut(s) 1063
DdeI CTNAG 5 cut(s) 115, 151, 534, 924, 1046
DpnI GATC 9 cut(s) 447, 626, 651, 873, 930, 936, 963, 1051, 1270
DpnII GATC 9 cut(s) 445, 624, 649, 871, 928, 934, 961, 1049, 1268
EaeI YGGCCR 2 cut(s) 388, 674
Eam1104I CTCTTC 2 cut(s) 372, 1086
EarI CTCTTC 2 cut(s) 372, 1086
EciI GGCGGA 1 cut(s) 171
Eco130I CCWWGG 2 cut(s) 792, 1107
Eco31I GGTCTC 2 cut(s) 118, 167
Eco32I GATATC 1 cut(s) 636
Eco47I GGWCC 3 cut(s) 512, 779, 1104
Eco57I CTGAAG 2 cut(s) 353, 1067
Eco81I CCTNAGG 1 cut(s) 151
Eco88I CYCGRG 1 cut(s) 455
EcoNI CCTNNNNNAGG 1 cut(s) 976
EcoO109I RGGNCCY 3 cut(s) 97, 512, 779
EcoRI GAATTC 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 277
EcoRV GATATC 1 cut(s) 636
EcoT14I CCWWGG 2 cut(s) 792, 1107
ErhI CCWWGG 2 cut(s) 792, 1107
FaeI CATG 2 cut(s) 901, 1018
FalI AAGNNNNNCTT 4 cut(s) 501, 533, 1021, 1053
FaqI GGGAC 3 cut(s) 93, 498, 765
FatI CATG 2 cut(s) 897, 1014
FbaI TGATCA 2 cut(s) 445, 871
Fnu4HI GCNGC 4 cut(s) 438, 452, 561, 834
FokI GGATG 6 cut(s) 405, 890, 1082, 1183, 1193, 1295
Fsp4HI GCNGC 4 cut(s) 438, 452, 561, 834
FspBI CTAG 3 cut(s) 695, 1244, 1327
GlaI GCGC 1 cut(s) 30
GluI GCNGC 4 cut(s) 438, 452, 561, 834
GsaI CCCAGC 1 cut(s) 305
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 4 cut(s) 99, 390, 402, 676
HapII CCGG 6 cut(s) 62, 166, 173, 657, 932, 938
HgaI GACGC 1 cut(s) 1147
HhaI GCGC 1 cut(s) 31
Hin1II CATG 2 cut(s) 901, 1018
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HinfI GANTC 9 cut(s) 65, 227, 335, 377, 494, 698, 968, 1078, 1301
HpaII CCGG 6 cut(s) 62, 166, 173, 657, 932, 938
HphI GGTGA 1 cut(s) 1010
Hpy188I TCNGA 8 cut(s) 182, 226, 260, 331, 649, 715, 1086, 1137
Hpy188III TCNNGA 9 cut(s) 457, 569, 628, 926, 932, 965, 979, 989, 1168
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 3 cut(s) 4, 88, 917
HpyCH4III ACNGT 1 cut(s) 291
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 7 cut(s) 109, 190, 437, 595, 1073, 1262, 1321
HpyF10VI GCNNNNNNNGC 1 cut(s) 883
HpyF3I CTNAG 5 cut(s) 115, 151, 534, 924, 1046
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 2 cut(s) 901, 1018
HspAI GCGC 1 cut(s) 29
KflI GGGWCCC 1 cut(s) 779
Kpn2I TCCGGA 1 cut(s) 931
Ksp22I TGATCA 2 cut(s) 445, 871
Kzo9I GATC 9 cut(s) 445, 624, 649, 871, 928, 934, 961, 1049, 1268
LmnI GCTCC 2 cut(s) 26, 367
Lsp1109I GCAGC 3 cut(s) 449, 463, 820
LweI GCATC 4 cut(s) 335, 469, 1060, 1273
MaeI CTAG 3 cut(s) 695, 1244, 1327
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 919
MalI GATC 9 cut(s) 447, 626, 651, 873, 930, 936, 963, 1051, 1270
MbiI CCGCTC 1 cut(s) 560
MboI GATC 9 cut(s) 445, 624, 649, 871, 928, 934, 961, 1049, 1268
MboII GAAGA 6 cut(s) 359, 503, 643, 702, 780, 1073
MfeI CAATTG 1 cut(s) 1188
MflI RGATCY 5 cut(s) 649, 928, 934, 961, 1049
MhlI GDGCHC 1 cut(s) 302
MlsI TGGCCA 2 cut(s) 390, 676
MluCI AATT 4 cut(s) 144, 176, 346, 1188
MluI ACGCGT 1 cut(s) 916
MluNI TGGCCA 2 cut(s) 390, 676
MlyI GAGTC 1 cut(s) 1072
MmeI TCCRAC 3 cut(s) 205, 524, 1224
Mox20I TGGCCA 2 cut(s) 390, 676
MroI TCCGGA 1 cut(s) 931
MroXI GAANNNNTTC 1 cut(s) 702
MscI TGGCCA 2 cut(s) 390, 676
MseI TTAA 1 cut(s) 587
MslI CAYNNNNRTG 1 cut(s) 1276
Msp20I TGGCCA 2 cut(s) 390, 676
MspA1I CMGCKG 2 cut(s) 440, 877
MspI CCGG 6 cut(s) 62, 166, 173, 657, 932, 938
MspR9I CCNGG 1 cut(s) 279
MunI CAATTG 1 cut(s) 1188
MvaI CCWGG 1 cut(s) 279
MvnI CGCG 1 cut(s) 918
MwoI GCNNNNNNNGC 1 cut(s) 883
NdeII GATC 9 cut(s) 445, 624, 649, 871, 928, 934, 961, 1049, 1268
NlaIII CATG 2 cut(s) 901, 1018
NlaIV GGNNCC 9 cut(s) 354, 514, 651, 780, 781, 930, 936, 942, 963
PaeR7I CTCGAG 1 cut(s) 455
PdmI GAANNNNTTC 1 cut(s) 702
PfeI GAWTC 8 cut(s) 65, 227, 335, 377, 494, 698, 968, 1301
PflMI CCANNNNNTGG 2 cut(s) 278, 397
PkrI GCNGC 4 cut(s) 439, 453, 562, 835
PleI GAGTC 1 cut(s) 1072
PpsI GAGTC 1 cut(s) 1072
PpuMI RGGWCCY 2 cut(s) 512, 779
Psp5II RGGWCCY 2 cut(s) 512, 779
Psp6I CCWGG 1 cut(s) 277
PspFI CCCAGC 1 cut(s) 301
PspGI CCWGG 1 cut(s) 277
PspN4I GGNNCC 9 cut(s) 354, 514, 651, 780, 781, 930, 936, 942, 963
PspPI GGNCC 5 cut(s) 97, 400, 512, 779, 1104
PspPPI RGGWCCY 2 cut(s) 512, 779
PstI CTGCAG 1 cut(s) 439
PsuI RGATCY 5 cut(s) 649, 928, 934, 961, 1049
PvuII CAGCTG 1 cut(s) 440
RsaI GTAC 1 cut(s) 1064
RsaNI GTAC 1 cut(s) 1063
RseI CAYNNNNRTG 1 cut(s) 1276
SaqAI TTAA 1 cut(s) 587
SatI GCNGC 4 cut(s) 438, 452, 561, 834
Sau3AI GATC 9 cut(s) 445, 624, 649, 871, 928, 934, 961, 1049, 1268
Sau96I GGNCC 5 cut(s) 97, 400, 512, 779, 1104
SchI GAGTC 1 cut(s) 1072
ScrFI CCNGG 1 cut(s) 279
SduI GDGCHC 1 cut(s) 302
SfaNI GCATC 4 cut(s) 335, 469, 1060, 1273
SfcI CTRYAG 1 cut(s) 435
Sfr274I CTCGAG 1 cut(s) 455
SinI GGWCC 3 cut(s) 512, 779, 1104
SlaI CTCGAG 1 cut(s) 455
SmiMI CAYNNNNRTG 1 cut(s) 1276
SmlI CTYRAG 2 cut(s) 455, 887
SmoI CTYRAG 2 cut(s) 455, 887
Sse9I AATT 4 cut(s) 144, 176, 346, 1188
SsiI CCGC 4 cut(s) 91, 156, 560, 877
SspMI CTAG 3 cut(s) 695, 1244, 1327
StyD4I CCNGG 1 cut(s) 277
StyI CCWWGG 2 cut(s) 792, 1107
TaaI ACNGT 1 cut(s) 291
TaiI ACGT 1 cut(s) 135
TaqI TCGA 2 cut(s) 456, 1042
TasI AATT 4 cut(s) 144, 176, 346, 1188
TatI WGTACW 1 cut(s) 1062
TauI GCSGC 1 cut(s) 563
TfiI GAWTC 8 cut(s) 65, 227, 335, 377, 494, 698, 968, 1301
Tru1I TTAA 1 cut(s) 587
Tru9I TTAA 1 cut(s) 587
TscAI CASTG 3 cut(s) 144, 253, 1234
TseI GCWGC 3 cut(s) 437, 451, 833
TspDTI ATGAA 7 cut(s) 229, 627, 695, 914, 1003, 1017, 1221
TspRI CASTG 3 cut(s) 144, 253, 1234
Van91I CCANNNNNTGG 2 cut(s) 278, 397
VpaK11BI GGWCC 3 cut(s) 512, 779, 1104
XagI CCTNNNNNAGG 1 cut(s) 976
XapI RAATTY 2 cut(s) 176, 346
XhoI CTCGAG 1 cut(s) 455
XmnI GAANNNNTTC 1 cut(s) 702
XspI CTAG 3 cut(s) 695, 1244, 1327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.