FvH4_5g23520

Phosphoribulokinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
14855673 .. 14858858
3186 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g23520.t1

Sequence Viewer

Length: 1227 bp
ATGGCCATTTGTGCAGTTCACACAAGCACCCAGTTCAACCCAACATGCTCATCAATCTCCACCCCTTCTAAATCCCACTTGGGATTCTGCCAAAGACAACAAGTAGTGTTCTACACCAAGAGGACTAGCAAGAGATCATCCACACCATACGTTGGCCTCATAGCTTGCGCTGCAGGCGGCCAGGAGACGGTGGTGATTGGCCTCGCTGCCGACTCCGGTTGCGGGAAGAGCACATTCATGAGGAGGTTGACAAGTGTGTTTGGAGGAGCAGCAGAGCCACCAAAGGGAGGCAACCCCGACTCCAACACTTTGATAAGTGACACCACCACTGTGATATGCTTGGATGATTACCACTCACTTGACAGGACTGGAAGGAAGGAGAAGGGAGTCACTGCTCTTGACCCAAGAGCCAACGACTTCGACCTCATGTATGAGCAAGTCAAGGCCATCAAGGATGGCAAGGCTGTTGAGAAACCTATTTACAACCATGTTAGTGGACTGTTAGACCCCCCGGAGCTCATCAAGCCCCCCAAGATCCTTGTCATTGAAGGCTTGCACCCAATGTACGATCAGCGAGTCAGGGACCTCTTGGACTTCAGTATCTACTTGGACATCAGCAATGAGGTTAAGTTTGCATGGAAAATCCAGAGGGACATGGCCGAGCGTGGACACAGTCTTGAGAGCATCAAAGCCAGTATCGAAGCCCGAAAACCCGATTTCGATGCTTACATTGATCCACAAAAGCAGTATGCTGATGCAGTTATCGAAGTGTTGCCAACCCAACTCATTCCAGGAGATAATGAGGGCAAGGTTTTGAGGGTGAGGTTGATAATGAAGGAGGGAGTCAAGTTCTTCAACCCAGTCTACTTGTTTGATGAGGGCTCTACCATTTCATGGATACCTTGCGGAAGGAAGCTTACCTGCTCTTACCCTGGAATCAAATTCACCTATGGTCCAGACACTTATTATGGCCAAGAGGTGTCAGTGTTGGAGATGGATGGACAATTTGACAGATTAGATGAGCTGATCTATGTCGAAAGCCATCTAAGCAACATCTCCACCAAGTTCTACGGAGAAGTCACCCAACAAATGTTGAAGCATTCCGACTTCCCAGGTAGCAGCAACGGGACCGGTCTCTTCCAAACCATCGTCGGGTTGAAGATCAGAGACCTCTATGAGCAGCTCATTGCAAGCAAGGCCAAAAGTCCGGTAGAAGCAAAAGCTTAA

Protein Analysis

409

Amino Acids

45.24

Weight (kDa)

6.28

Isoelectric Point (pI)

27.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRK PF00485 65 - 263 1.5e-79 Phosphoribulokinase / Uridine kinase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014052)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32060
fragaria_vesca FvH4_5g23520
malus_domestica MD00G1068500.v1.1 MD06G1023500.v1.1
prunus_persica Prupe.5G024600_v2.0.a1
pyrus_communis pycom06g01910 pycom16g25320
rosa_chinensis RchiOBHm_Chr7g0212791
rosa_laevigata RLG00000002868
rosa_multiflora Rmu_sc0000394.1_g000036
rosa_roxburghii Rroxscaffold_3G00246550
rosa_rugosa Rorug07G0136800
rosa_samantha Rh7AG268300 Rh7BG263700 Rh7CG287300
rosa_wichuraiana Rw7G023180 Rw7G023290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 929
AccB7I CCANNNNNTGG 2 cut(s) 152, 894
AccI GTMKAC 1 cut(s) 864
AciI CCGC 3 cut(s) 177, 222, 906
AclWI GGATC 2 cut(s) 529, 728
AcoI YGGCCR 4 cut(s) 3, 178, 657, 970
AcsI RAATTY 1 cut(s) 941
AcuI CTGAAG 1 cut(s) 580
AfaI GTAC 1 cut(s) 566
AfiI CCNNNNNNNGG 7 cut(s) 152, 187, 222, 284, 287, 894, 1152
AgeI ACCGGT 1 cut(s) 1130
AgsI TTSAA 5 cut(s) 37, 548, 856, 1096, 1159
AjnI CCWGG 4 cut(s) 180, 790, 931, 1111
AleI CACNNNNGTG 1 cut(s) 329
AluBI AGCT 6 cut(s) 164, 517, 916, 1024, 1183, 1223
AluI AGCT 6 cut(s) 164, 517, 916, 1024, 1183, 1223
Alw21I GWGCWC 2 cut(s) 233, 519
Alw26I GTCTC 3 cut(s) 179, 1139, 1161
AlwI GGATC 2 cut(s) 529, 728
AoxI GGCC 8 cut(s) 3, 154, 178, 199, 444, 657, 970, 1197
ApeKI GCWGC 5 cut(s) 170, 206, 269, 1119, 1180
ApoI RAATTY 1 cut(s) 941
AsiGI ACCGGT 1 cut(s) 1130
AspLEI GCGC 1 cut(s) 170
AspS9I GGNCC 3 cut(s) 583, 953, 1128
AsuC2I CCSGG 1 cut(s) 512
AsuHPI GGTGA 4 cut(s) 205, 832, 937, 1072
AvaII GGWCC 3 cut(s) 583, 953, 1128
BaeI ACNNNNGTAYC 2 cut(s) 583, 616
BalI TGGCCA 2 cut(s) 5, 972
BanII GRGCYC 2 cut(s) 519, 884
BarI GAAGNNNNNNTAC 2 cut(s) 901, 933
Bbv12I GWGCWC 2 cut(s) 233, 519
BbvI GCAGC 5 cut(s) 157, 193, 281, 1131, 1192
BccI CCATC 6 cut(s) 449, 455, 988, 992, 1050, 1154
BcgI CGANNNNNNTGC 2 cut(s) 704, 738
BciT130I CCWGG 4 cut(s) 182, 792, 933, 1113
BciVI GTATCC 1 cut(s) 891
BcnI CCSGG 1 cut(s) 512
BcoDI GTCTC 3 cut(s) 179, 1139, 1161
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 171
BfuAI ACCTGC 1 cut(s) 929
BfuI GTATCC 1 cut(s) 891
BisI GCNGC 6 cut(s) 171, 178, 207, 270, 1120, 1181
BlsI GCNGC 6 cut(s) 172, 179, 208, 271, 1121, 1182
Bme1390I CCNGG 5 cut(s) 182, 512, 792, 933, 1113
Bme18I GGWCC 3 cut(s) 583, 953, 1128
BmgT120I GGNCC 3 cut(s) 583, 953, 1128
BmiI GGNNCC 2 cut(s) 584, 1129
BmrFI CCNGG 5 cut(s) 182, 512, 792, 933, 1113
BmrI ACTGGG 2 cut(s) 25, 854
BmsI GCATC 3 cut(s) 693, 712, 745
BmuI ACTGGG 2 cut(s) 25, 854
BpuEI CTTGAG 1 cut(s) 698
BpuMI CCSGG 1 cut(s) 512
BsaI GGTCTC 2 cut(s) 1139, 1161
BsaJI CCNNGG 3 cut(s) 510, 931, 1111
BsaWI WCCGGW 3 cut(s) 215, 1130, 1207
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bsc4I CCNNNNNNNGG 7 cut(s) 152, 187, 222, 284, 287, 894, 1152
Bse118I RCCGGY 1 cut(s) 1130
Bse1I ACTGG 4 cut(s) 31, 373, 693, 860
Bse3DI GCAATG 2 cut(s) 625, 1185
BseBI CCWGG 4 cut(s) 182, 792, 933, 1113
BseDI CCNNGG 3 cut(s) 510, 931, 1111
BseGI GGATG 4 cut(s) 137, 349, 460, 1003
BseLI CCNNNNNNNGG 7 cut(s) 152, 187, 222, 284, 287, 894, 1152
BseMI GCAATG 2 cut(s) 625, 1185
BseNI ACTGG 4 cut(s) 31, 373, 693, 860
BseRI GAGGAG 2 cut(s) 256, 279
BseXI GCAGC 5 cut(s) 157, 193, 281, 1131, 1192
BsgI GTGCAG 1 cut(s) 33
BshFI GGCC 8 cut(s) 5, 156, 180, 201, 446, 659, 972, 1199
BshTI ACCGGT 1 cut(s) 1130
BsiHKAI GWGCWC 2 cut(s) 233, 519
BsiSI CCGG 4 cut(s) 216, 512, 1131, 1208
BslFI GGGAC 3 cut(s) 596, 665, 1141
BslI CCNNNNNNNGG 7 cut(s) 152, 187, 222, 284, 287, 894, 1152
BsmAI GTCTC 3 cut(s) 179, 1139, 1161
BsmBI CGTCTC 1 cut(s) 179
BsmFI GGGAC 3 cut(s) 596, 665, 1141
BsmI GAATGC 1 cut(s) 1099
BsnI GGCC 8 cut(s) 5, 156, 180, 201, 446, 659, 972, 1199
Bso31I GGTCTC 2 cut(s) 1139, 1161
Bsp1286I GDGCHC 3 cut(s) 233, 519, 884
Bsp143I GATC 6 cut(s) 134, 534, 568, 733, 1026, 1161
BspACI CCGC 3 cut(s) 177, 222, 906
BspANI GGCC 8 cut(s) 5, 156, 180, 201, 446, 659, 972, 1199
BspHI TCATGA 1 cut(s) 237
BspLI GGNNCC 2 cut(s) 584, 1129
BspMAI CTGCAG 1 cut(s) 175
BspMI ACCTGC 1 cut(s) 929
BspPI GGATC 2 cut(s) 529, 728
BspQI GCTCTTC 1 cut(s) 221
BspTNI GGTCTC 2 cut(s) 1139, 1161
BsrDI GCAATG 2 cut(s) 625, 1185
BsrFI RCCGGY 1 cut(s) 1130
BsrI ACTGG 4 cut(s) 31, 373, 693, 860
BssAI RCCGGY 1 cut(s) 1130
BssECI CCNNGG 3 cut(s) 510, 931, 1111
BssMI GATC 6 cut(s) 134, 534, 568, 733, 1026, 1161
Bst2UI CCWGG 4 cut(s) 182, 792, 933, 1113
Bst4CI ACNGT 4 cut(s) 190, 331, 501, 674
Bst6I CTCTTC 2 cut(s) 221, 1142
BstC8I GCNNGC 4 cut(s) 166, 175, 554, 1192
BstDEI CTNAG 1 cut(s) 1046
BstF5I GGATG 4 cut(s) 137, 349, 460, 1003
BstHHI GCGC 1 cut(s) 170
BstKTI GATC 6 cut(s) 137, 537, 571, 736, 1029, 1164
BstMAI GTCTC 3 cut(s) 179, 1139, 1161
BstMBI GATC 6 cut(s) 134, 534, 568, 733, 1026, 1161
BstMWI GCNNNNNNNGC 7 cut(s) 11, 170, 174, 228, 523, 1047, 1196
BstNI CCWGG 4 cut(s) 182, 792, 933, 1113
BstNSI RCATGY 1 cut(s) 48
BstSCI CCNGG 5 cut(s) 180, 510, 790, 931, 1111
BstSFI CTRYAG 1 cut(s) 171
BstV1I GCAGC 5 cut(s) 157, 193, 281, 1131, 1192
BstX2I RGATCY 1 cut(s) 534
BstXI CCANNNNNNTGG 1 cut(s) 494
BstYI RGATCY 1 cut(s) 534
BsuI GTATCC 1 cut(s) 891
BsuRI GGCC 8 cut(s) 5, 156, 180, 201, 446, 659, 972, 1199
BtsCI GGATG 4 cut(s) 137, 349, 460, 1003
BtsI GCAGTG 1 cut(s) 390
BtsIMutI CAGTG 3 cut(s) 327, 390, 990
BveI ACCTGC 1 cut(s) 929
Cac8I GCNNGC 4 cut(s) 166, 175, 554, 1192
CciI TCATGA 1 cut(s) 237
CfoI GCGC 1 cut(s) 170
Cfr10I RCCGGY 1 cut(s) 1130
Cfr13I GGNCC 3 cut(s) 583, 953, 1128
Csp6I GTAC 1 cut(s) 565
CspAI ACCGGT 1 cut(s) 1130
CviAII CATG 7 cut(s) 45, 238, 427, 488, 636, 655, 894
CviQI GTAC 1 cut(s) 565
DdeI CTNAG 1 cut(s) 1046
DpnI GATC 6 cut(s) 136, 536, 570, 735, 1028, 1163
DpnII GATC 6 cut(s) 134, 534, 568, 733, 1026, 1161
EaeI YGGCCR 4 cut(s) 3, 178, 657, 970
Eam1104I CTCTTC 2 cut(s) 221, 1142
EarI CTCTTC 2 cut(s) 221, 1142
Ecl136II GAGCTC 1 cut(s) 517
Eco24I GRGCYC 2 cut(s) 519, 884
Eco31I GGTCTC 2 cut(s) 1139, 1161
Eco47I GGWCC 3 cut(s) 583, 953, 1128
Eco53kI GAGCTC 1 cut(s) 517
Eco57I CTGAAG 1 cut(s) 580
EcoICRI GAGCTC 1 cut(s) 517
EcoO109I RGGNCCY 1 cut(s) 583
EcoRII CCWGG 4 cut(s) 180, 790, 931, 1111
EcoT38I GRGCYC 2 cut(s) 519, 884
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 7 cut(s) 48, 241, 430, 491, 639, 658, 897
FaqI GGGAC 3 cut(s) 596, 665, 1141
FatI CATG 7 cut(s) 44, 237, 426, 487, 635, 654, 893
FauI CCCGC 1 cut(s) 215
FblI GTMKAC 1 cut(s) 864
Fnu4HI GCNGC 6 cut(s) 171, 178, 207, 270, 1120, 1181
FokI GGATG 4 cut(s) 124, 356, 467, 1010
FriOI GRGCYC 2 cut(s) 519, 884
Fsp4HI GCNGC 6 cut(s) 171, 178, 207, 270, 1120, 1181
FspBI CTAG 1 cut(s) 126
GlaI GCGC 1 cut(s) 169
GluI GCNGC 6 cut(s) 171, 178, 207, 270, 1120, 1181
HaeIII GGCC 8 cut(s) 5, 156, 180, 201, 446, 659, 972, 1199
HapII CCGG 4 cut(s) 216, 512, 1131, 1208
HhaI GCGC 1 cut(s) 170
Hin1II CATG 7 cut(s) 48, 241, 430, 491, 639, 658, 897
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HincII GTYRAC 1 cut(s) 249
HindII GTYRAC 1 cut(s) 249
HindIII AAGCTT 2 cut(s) 914, 1221
HinfI GANTC 7 cut(s) 84, 212, 299, 387, 576, 843, 936
HpaII CCGG 4 cut(s) 216, 512, 1131, 1208
HphI GGTGA 4 cut(s) 205, 832, 937, 1072
Hpy166II GTNNAC 5 cut(s) 19, 249, 497, 668, 865
Hpy188I TCNGA 2 cut(s) 1105, 1166
Hpy188III TCNNGA 5 cut(s) 238, 398, 646, 677, 956
Hpy8I GTNNAC 5 cut(s) 19, 249, 497, 668, 865
Hpy99I CGWCG 1 cut(s) 1154
HpyAV CCTTC 7 cut(s) 75, 366, 370, 376, 542, 829, 903
HpyCH4III ACNGT 4 cut(s) 190, 331, 501, 674
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 6 cut(s) 14, 173, 556, 635, 758, 1190
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 170, 174, 228, 523, 1047, 1196
HpyF3I CTNAG 1 cut(s) 1046
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 7 cut(s) 48, 241, 430, 491, 639, 658, 897
HspAI GCGC 1 cut(s) 168
Kzo9I GATC 6 cut(s) 134, 534, 568, 733, 1026, 1161
LguI GCTCTTC 1 cut(s) 221
LmnI GCTCC 2 cut(s) 266, 514
Lsp1109I GCAGC 5 cut(s) 157, 193, 281, 1131, 1192
LweI GCATC 3 cut(s) 693, 712, 745
MaeI CTAG 1 cut(s) 126
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 3 cut(s) 317, 388, 1078
MalI GATC 6 cut(s) 136, 536, 570, 735, 1028, 1163
MboI GATC 6 cut(s) 134, 534, 568, 733, 1026, 1161
MboII GAAGA 4 cut(s) 238, 844, 1129, 1171
MflI RGATCY 1 cut(s) 534
MhlI GDGCHC 3 cut(s) 233, 519, 884
MlsI TGGCCA 2 cut(s) 5, 972
MluCI AATT 2 cut(s) 941, 1004
MluNI TGGCCA 2 cut(s) 5, 972
MlyI GAGTC 5 cut(s) 206, 293, 396, 585, 852
MmeI TCCRAC 3 cut(s) 327, 969, 1128
Mox20I TGGCCA 2 cut(s) 5, 972
MscI TGGCCA 2 cut(s) 5, 972
MseI TTAA 2 cut(s) 627, 1225
MslI CAYNNNNRTG 3 cut(s) 236, 329, 492
Msp20I TGGCCA 2 cut(s) 5, 972
MspI CCGG 4 cut(s) 216, 512, 1131, 1208
MspR9I CCNGG 5 cut(s) 182, 512, 792, 933, 1113
Mva1269I GAATGC 1 cut(s) 1099
MvaI CCWGG 4 cut(s) 182, 792, 933, 1113
MwoI GCNNNNNNNGC 7 cut(s) 11, 170, 174, 228, 523, 1047, 1196
NciI CCSGG 1 cut(s) 512
NdeII GATC 6 cut(s) 134, 534, 568, 733, 1026, 1161
NlaIII CATG 7 cut(s) 48, 241, 430, 491, 639, 658, 897
NlaIV GGNNCC 2 cut(s) 584, 1129
NmeAIII GCCGAG 1 cut(s) 685
NmuCI GTSAC 3 cut(s) 317, 388, 1078
NspI RCATGY 1 cut(s) 48
OliI CACNNNNGTG 1 cut(s) 329
PagI TCATGA 1 cut(s) 237
PciSI GCTCTTC 1 cut(s) 221
PctI GAATGC 1 cut(s) 1099
PfeI GAWTC 2 cut(s) 84, 936
PflFI GACNNNGTC 1 cut(s) 672
PflMI CCANNNNNTGG 2 cut(s) 152, 894
PfoI TCCNGGA 1 cut(s) 790
PinAI ACCGGT 1 cut(s) 1130
PkrI GCNGC 6 cut(s) 172, 179, 208, 271, 1121, 1182
PleI GAGTC 5 cut(s) 206, 293, 395, 584, 851
PpsI GAGTC 5 cut(s) 206, 293, 395, 584, 851
PpuMI RGGWCCY 1 cut(s) 583
Psp124BI GAGCTC 1 cut(s) 519
Psp5II RGGWCCY 1 cut(s) 583
Psp6I CCWGG 4 cut(s) 180, 790, 931, 1111
PspGI CCWGG 4 cut(s) 180, 790, 931, 1111
PspN4I GGNNCC 2 cut(s) 584, 1129
PspPI GGNCC 3 cut(s) 583, 953, 1128
PspPPI RGGWCCY 1 cut(s) 583
PstI CTGCAG 1 cut(s) 175
PsuI RGATCY 1 cut(s) 534
PsyI GACNNNGTC 1 cut(s) 672
RsaI GTAC 1 cut(s) 566
RsaNI GTAC 1 cut(s) 565
RseI CAYNNNNRTG 3 cut(s) 236, 329, 492
SacI GAGCTC 1 cut(s) 519
SapI GCTCTTC 1 cut(s) 221
SaqAI TTAA 2 cut(s) 627, 1225
SatI GCNGC 6 cut(s) 171, 178, 207, 270, 1120, 1181
Sau3AI GATC 6 cut(s) 134, 534, 568, 733, 1026, 1161
Sau96I GGNCC 3 cut(s) 583, 953, 1128
SchI GAGTC 5 cut(s) 206, 293, 396, 585, 852
ScrFI CCNGG 5 cut(s) 182, 512, 792, 933, 1113
SduI GDGCHC 3 cut(s) 233, 519, 884
SfaNI GCATC 3 cut(s) 693, 712, 745
SfcI CTRYAG 1 cut(s) 171
SinI GGWCC 3 cut(s) 583, 953, 1128
SmiMI CAYNNNNRTG 3 cut(s) 236, 329, 492
SmlI CTYRAG 1 cut(s) 677
SmoI CTYRAG 1 cut(s) 677
Sse9I AATT 2 cut(s) 941, 1004
SsiI CCGC 3 cut(s) 177, 222, 906
SspMI CTAG 1 cut(s) 126
SstI GAGCTC 1 cut(s) 519
StyD4I CCNGG 5 cut(s) 180, 510, 790, 931, 1111
TaaI ACNGT 4 cut(s) 190, 331, 501, 674
TaiI ACGT 1 cut(s) 153
TaqI TCGA 5 cut(s) 420, 699, 720, 765, 1035
TasI AATT 2 cut(s) 941, 1004
TauI GCSGC 1 cut(s) 180
TfiI GAWTC 2 cut(s) 84, 936
Tru1I TTAA 2 cut(s) 627, 1225
Tru9I TTAA 2 cut(s) 627, 1225
TscAI CASTG 3 cut(s) 334, 397, 990
TseFI GTSAC 3 cut(s) 317, 388, 1078
TseI GCWGC 5 cut(s) 170, 206, 269, 1119, 1180
Tsp45I GTSAC 3 cut(s) 317, 388, 1078
TspDTI ATGAA 3 cut(s) 226, 848, 882
TspGWI ACGGA 1 cut(s) 1086
TspRI CASTG 3 cut(s) 334, 397, 990
Tth111I GACNNNGTC 1 cut(s) 672
Van91I CCANNNNNTGG 2 cut(s) 152, 894
VpaK11BI GGWCC 3 cut(s) 583, 953, 1128
XapI RAATTY 1 cut(s) 941
XceI RCATGY 1 cut(s) 48
XmiI GTMKAC 1 cut(s) 864
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.