Prupe.5G024600_v2.0.a1

Phosphoribulokinase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
2761059 .. 2764534
3476 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G024600.1

Sequence Viewer

Length: 1245 bp
ATGGCAATTTGTGCAGTTTACACAACCACCCAACTGAACCCAACATGTTCATTTTCCACACCAGCATCAAAAACCCAAACCCAGCTGGGATTTGGATTGGGGTTCTGCCAGAAGCAGCAGGTGGTGTTTTACAAGAGAAGTCAAAGTAATAGCAGAAGAGCAAGTGTGAGTTTGATAACATGCTCCGCGGGTGGCCAAGAGACGGTGGTGATTGGTCTAGCAGCAGACTCAGGGTGCGGGAAGAGCACATTCATGAGGAGGCTGACGAGCGTGTTCGGAGGAGCCGCGGAGCCACCCAAGGGAGGCAACCCGGACTCGAACACGCTCATCAGCGACACTACGACAGTCATATGCTTGGATGATTACCACTCTCTGGATAGGACAGGGAGGAAGGAGAAAGGGGTGACTGCTCTTGACCCAAGAGCCAACAACTTTGATCTCATGTATGAGCAGGTCAAGGCAATCAAGGAAGGGAAAGCTGTCGATAAGCCCATTTACAACCATGTCTCTGGTCTCTTGGACCCTCCTGAGCTCATCAAGCCCCCCAAGATTCTTGTCATTGAAGGCTTGCACCCAATGTATGATCAGCGAGTTAGGGACCTGTTGGACTTCAGCATCTACTTGGACATCAGCAATGAGGTCAAGTTTGCATGGAAAATTCAGAGGGACATGGCGGAGCGTGGTCACAGTCTTGAGAGCATCAAAGCCAGTATTGAAGCCCGGAAGCCTGATTTCGATGCTTATATTGATCCACAAAAGCAGTACGCTGATGCAGTGATTGAAGTGTTGCCAACCCAATTGATTCCAGGGGATAATGAGGGGAAGGTATTGAGAGTGAGGTTGATAATGAAAGAAGGTGTGAAATTTTTCAACCCAGTCTACTTGTTTGATGAGGGCTCCACCATCTCCTGGATACCATGTGGAAGGAAGCTCACCTGCTCTTACCCTGGAATCAAGTTCACCTATGGCCCTGACACTTACTTTGGCAACGAGGTGTCTGTGTTGGAGATGGATGGGCAATTTGACAGATTAGATGAGCTGATCTATGTAGAAAGCCATCTGAGCAACATCTCCACCAAGTTCTATGGAGAAGTCACCCAACAAATGTTGAAGCTTTCGGACTTCCCCGGCAGCAACAACGGCACTGGTCTCTTCCAAACCATAGTCGGATTAAAGATCCGAGACCTCTTTGAGCAGCTCATTGCAAGCAAGGCCAAAACTCCAGTAGAAGCAACTAAAGCTTAA

Protein Analysis

415

Amino Acids

45.85

Weight (kDa)

6.27

Isoelectric Point (pI)

24.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014052)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32060
fragaria_vesca FvH4_5g23520
malus_domestica MD00G1068500.v1.1 MD06G1023500.v1.1
prunus_persica Prupe.5G024600_v2.0.a1
pyrus_communis pycom06g01910 pycom16g25320
rosa_chinensis RchiOBHm_Chr7g0212791
rosa_laevigata RLG00000002868
rosa_multiflora Rmu_sc0000394.1_g000036
rosa_roxburghii Rroxscaffold_3G00246550
rosa_rugosa Rorug07G0136800
rosa_samantha Rh7AG268300 Rh7BG263700 Rh7CG287300
rosa_wichuraiana Rw7G023180 Rw7G023290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 109, 944
Acc36I ACCTGC 3 cut(s) 109, 442, 944
AccB7I CCANNNNNTGG 2 cut(s) 373, 909
AccI GTMKAC 1 cut(s) 879
AccII CGCG 2 cut(s) 188, 287
AciI CCGC 6 cut(s) 186, 188, 237, 285, 287, 674
AclWI GGATC 2 cut(s) 743, 1171
AcoI YGGCCR 1 cut(s) 193
AcsI RAATTY 2 cut(s) 657, 863
AcuI CTGAAG 1 cut(s) 595
AfaI GTAC 1 cut(s) 764
AfiI CCNNNNNNNGG 5 cut(s) 202, 299, 302, 373, 909
AflIII ACRYGT 1 cut(s) 44
AgsI TTSAA 5 cut(s) 563, 716, 782, 871, 1111
AjnI CCWGG 3 cut(s) 805, 908, 946
AluBI AGCT 8 cut(s) 85, 479, 532, 931, 1039, 1114, 1198, 1241
AluI AGCT 8 cut(s) 85, 479, 532, 931, 1039, 1114, 1198, 1241
Alw21I GWGCWC 2 cut(s) 248, 534
Alw26I GTCTC 5 cut(s) 194, 511, 518, 1154, 1176
AlwI GGATC 2 cut(s) 743, 1171
AoxI GGCC 3 cut(s) 193, 967, 1212
ApeKI GCWGC 4 cut(s) 115, 221, 1131, 1195
ApoI RAATTY 2 cut(s) 657, 863
ArsI GACNNNNNNTTYG 2 cut(s) 965, 997
Asp700I GAANNNNTTC 1 cut(s) 866
AspS9I GGNCC 3 cut(s) 520, 598, 968
AsuC2I CCSGG 3 cut(s) 311, 721, 1128
AsuHPI GGTGA 5 cut(s) 220, 415, 925, 952, 1087
AvaII GGWCC 2 cut(s) 520, 598
BalI TGGCCA 1 cut(s) 195
BanII GRGCYC 2 cut(s) 534, 899
Bbv12I GWGCWC 2 cut(s) 248, 534
BbvI GCAGC 4 cut(s) 127, 233, 1143, 1207
BccI CCATC 4 cut(s) 911, 1003, 1007, 1065
BceAI ACGGC 1 cut(s) 1156
BciT130I CCWGG 3 cut(s) 807, 910, 948
BciVI GTATCC 1 cut(s) 906
BclI TGATCA 1 cut(s) 583
BcnI CCSGG 3 cut(s) 311, 721, 1128
BcoDI GTCTC 5 cut(s) 194, 511, 518, 1154, 1176
BfaI CTAG 1 cut(s) 218
BfuAI ACCTGC 3 cut(s) 109, 442, 944
BfuI GTATCC 1 cut(s) 906
BisI GCNGC 5 cut(s) 116, 222, 285, 1132, 1196
BlsI GCNGC 5 cut(s) 117, 223, 286, 1133, 1197
Bme1390I CCNGG 6 cut(s) 311, 721, 807, 910, 948, 1128
Bme18I GGWCC 2 cut(s) 520, 598
BmgT120I GGNCC 3 cut(s) 520, 598, 968
BmiI GGNNCC 5 cut(s) 283, 291, 522, 599, 898
BmrFI CCNGG 6 cut(s) 311, 721, 807, 910, 948, 1128
BmrI ACTGGG 1 cut(s) 869
BmsI GCATC 5 cut(s) 74, 624, 708, 727, 760
BmuI ACTGGG 1 cut(s) 869
BpmI CTGGAG 1 cut(s) 1206
Bpu10I CCTNAGC 1 cut(s) 528
BpuEI CTTGAG 1 cut(s) 713
BpuMI CCSGG 3 cut(s) 311, 721, 1128
BsaI GGTCTC 3 cut(s) 518, 1154, 1176
BsaJI CCNNGG 6 cut(s) 186, 285, 297, 806, 946, 1126
Bsc4I CCNNNNNNNGG 5 cut(s) 202, 299, 302, 373, 909
Bse1I ACTGG 4 cut(s) 708, 875, 1150, 1223
Bse3DI GCAATG 2 cut(s) 640, 1200
BseBI CCWGG 3 cut(s) 807, 910, 948
BseDI CCNNGG 6 cut(s) 186, 285, 297, 806, 946, 1126
BseGI GGATG 2 cut(s) 364, 1018
BseLI CCNNNNNNNGG 5 cut(s) 202, 299, 302, 373, 909
BseMI GCAATG 2 cut(s) 640, 1200
BseMII CTCAG 3 cut(s) 243, 519, 1052
BseNI ACTGG 4 cut(s) 708, 875, 1150, 1223
BseRI GAGGAG 2 cut(s) 271, 294
BseXI GCAGC 4 cut(s) 127, 233, 1143, 1207
BseYI CCCAGC 2 cut(s) 81, 85
BsgI GTGCAG 1 cut(s) 33
Bsh1236I CGCG 2 cut(s) 188, 287
BshFI GGCC 3 cut(s) 195, 969, 1214
BsiHKAI GWGCWC 2 cut(s) 248, 534
BsiSI CCGG 3 cut(s) 311, 721, 1128
BslFI GGGAC 2 cut(s) 611, 680
BslI CCNNNNNNNGG 5 cut(s) 202, 299, 302, 373, 909
BsmAI GTCTC 5 cut(s) 194, 511, 518, 1154, 1176
BsmBI CGTCTC 1 cut(s) 194
BsmFI GGGAC 2 cut(s) 611, 680
BsnI GGCC 3 cut(s) 195, 969, 1214
Bso31I GGTCTC 3 cut(s) 518, 1154, 1176
Bsp1286I GDGCHC 3 cut(s) 248, 534, 899
Bsp143I GATC 5 cut(s) 436, 583, 748, 1041, 1176
BspACI CCGC 6 cut(s) 186, 188, 237, 285, 287, 674
BspANI GGCC 3 cut(s) 195, 969, 1214
BspCNI CTCAG 3 cut(s) 242, 520, 1053
BspFNI CGCG 2 cut(s) 188, 287
BspHI TCATGA 1 cut(s) 252
BspLI GGNNCC 5 cut(s) 283, 291, 522, 599, 898
BspMI ACCTGC 3 cut(s) 109, 442, 944
BspPI GGATC 2 cut(s) 743, 1171
BspQI GCTCTTC 2 cut(s) 151, 236
BspTNI GGTCTC 3 cut(s) 518, 1154, 1176
BsrDI GCAATG 2 cut(s) 640, 1200
BsrI ACTGG 4 cut(s) 708, 875, 1150, 1223
BssECI CCNNGG 6 cut(s) 186, 285, 297, 806, 946, 1126
BssMI GATC 5 cut(s) 436, 583, 748, 1041, 1176
BssT1I CCWWGG 1 cut(s) 297
Bst2UI CCWGG 3 cut(s) 807, 910, 948
Bst4CI ACNGT 3 cut(s) 205, 346, 689
Bst6I CTCTTC 3 cut(s) 151, 236, 1157
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 2 cut(s) 569, 1207
BstDEI CTNAG 3 cut(s) 229, 528, 1061
BstDSI CCRYGG 2 cut(s) 186, 285
BstF5I GGATG 2 cut(s) 364, 1018
BstFNI CGCG 2 cut(s) 188, 287
BstKTI GATC 5 cut(s) 439, 586, 751, 1044, 1179
BstMAI GTCTC 5 cut(s) 194, 511, 518, 1154, 1176
BstMBI GATC 5 cut(s) 436, 583, 748, 1041, 1176
BstMWI GCNNNNNNNGC 7 cut(s) 11, 243, 538, 1062, 1140, 1211, 1238
BstNI CCWGG 3 cut(s) 807, 910, 948
BstNSI RCATGY 2 cut(s) 48, 183
BstSCI CCNGG 6 cut(s) 309, 719, 805, 908, 946, 1126
BstUI CGCG 2 cut(s) 188, 287
BstV1I GCAGC 4 cut(s) 127, 233, 1143, 1207
BstX2I RGATCY 1 cut(s) 1176
BstXI CCANNNNNNTGG 1 cut(s) 509
BstYI RGATCY 1 cut(s) 1176
BsuI GTATCC 1 cut(s) 906
BsuRI GGCC 3 cut(s) 195, 969, 1214
BtgI CCRYGG 2 cut(s) 186, 285
BtsCI GGATG 2 cut(s) 364, 1018
BtsI GCAGTG 1 cut(s) 780
BtsIMutI CAGTG 2 cut(s) 780, 1143
BveI ACCTGC 3 cut(s) 109, 442, 944
Cac8I GCNNGC 2 cut(s) 569, 1207
CciI TCATGA 1 cut(s) 252
Cfr13I GGNCC 3 cut(s) 520, 598, 968
Cfr42I CCGCGG 2 cut(s) 189, 288
Csp6I GTAC 1 cut(s) 763
CviAII CATG 8 cut(s) 45, 180, 253, 442, 503, 651, 670, 918
CviQI GTAC 1 cut(s) 763
DdeI CTNAG 3 cut(s) 229, 528, 1061
DpnI GATC 5 cut(s) 438, 585, 750, 1043, 1178
DpnII GATC 5 cut(s) 436, 583, 748, 1041, 1176
EaeI YGGCCR 1 cut(s) 193
Eam1104I CTCTTC 3 cut(s) 151, 236, 1157
EarI CTCTTC 3 cut(s) 151, 236, 1157
EciI GGCGGA 1 cut(s) 689
Ecl136II GAGCTC 1 cut(s) 532
Eco130I CCWWGG 1 cut(s) 297
Eco24I GRGCYC 2 cut(s) 534, 899
Eco31I GGTCTC 3 cut(s) 518, 1154, 1176
Eco47I GGWCC 2 cut(s) 520, 598
Eco53kI GAGCTC 1 cut(s) 532
Eco57I CTGAAG 1 cut(s) 595
EcoICRI GAGCTC 1 cut(s) 532
EcoO109I RGGNCCY 1 cut(s) 598
EcoRII CCWGG 3 cut(s) 805, 908, 946
EcoT14I CCWWGG 1 cut(s) 297
EcoT38I GRGCYC 2 cut(s) 534, 899
ErhI CCWWGG 1 cut(s) 297
Esp3I CGTCTC 1 cut(s) 194
FaeI CATG 8 cut(s) 48, 183, 256, 445, 506, 654, 673, 921
FaqI GGGAC 2 cut(s) 611, 680
FatI CATG 8 cut(s) 44, 179, 252, 441, 502, 650, 669, 917
FauI CCCGC 2 cut(s) 181, 230
FauNDI CATATG 1 cut(s) 350
FbaI TGATCA 1 cut(s) 583
FblI GTMKAC 1 cut(s) 879
Fnu4HI GCNGC 5 cut(s) 116, 222, 285, 1132, 1196
FokI GGATG 2 cut(s) 371, 1025
FriOI GRGCYC 2 cut(s) 534, 899
Fsp4HI GCNGC 5 cut(s) 116, 222, 285, 1132, 1196
FspBI CTAG 1 cut(s) 218
GluI GCNGC 5 cut(s) 116, 222, 285, 1132, 1196
GsaI CCCAGC 2 cut(s) 85, 89
GsuI CTGGAG 1 cut(s) 1206
HaeIII GGCC 3 cut(s) 195, 969, 1214
HapII CCGG 3 cut(s) 311, 721, 1128
Hin1II CATG 8 cut(s) 48, 183, 256, 445, 506, 654, 673, 921
HindIII AAGCTT 2 cut(s) 1112, 1239
HinfI GANTC 5 cut(s) 227, 314, 550, 802, 951
HpaII CCGG 3 cut(s) 311, 721, 1128
HphI GGTGA 5 cut(s) 220, 415, 925, 952, 1087
Hpy166II GTNNAC 3 cut(s) 19, 880, 960
Hpy188I TCNGA 6 cut(s) 278, 663, 1062, 1120, 1169, 1181
Hpy188III TCNNGA 5 cut(s) 253, 374, 413, 527, 692
Hpy8I GTNNAC 3 cut(s) 19, 880, 960
HpyAV CCTTC 6 cut(s) 385, 464, 557, 817, 848, 918
HpyCH4III ACNGT 3 cut(s) 205, 346, 689
HpyCH4V TGCA 5 cut(s) 14, 571, 650, 773, 1205
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 243, 538, 1062, 1140, 1211, 1238
HpyF3I CTNAG 3 cut(s) 229, 528, 1061
Hsp92II CATG 8 cut(s) 48, 183, 256, 445, 506, 654, 673, 921
Ksp22I TGATCA 1 cut(s) 583
KspI CCGCGG 2 cut(s) 189, 288
Kzo9I GATC 5 cut(s) 436, 583, 748, 1041, 1176
LguI GCTCTTC 2 cut(s) 151, 236
LmnI GCTCC 5 cut(s) 188, 281, 289, 676, 902
Lsp1109I GCAGC 4 cut(s) 127, 233, 1143, 1207
LweI GCATC 5 cut(s) 74, 624, 708, 727, 760
MaeI CTAG 1 cut(s) 218
MaeIII GTNAC 3 cut(s) 403, 683, 1093
MalI GATC 5 cut(s) 438, 585, 750, 1043, 1178
MboI GATC 5 cut(s) 436, 583, 748, 1041, 1176
MboII GAAGA 3 cut(s) 168, 253, 1144
MfeI CAATTG 1 cut(s) 797
MflI RGATCY 1 cut(s) 1176
MhlI GDGCHC 3 cut(s) 248, 534, 899
MlsI TGGCCA 1 cut(s) 195
MluCI AATT 5 cut(s) 6, 657, 797, 863, 1019
MluNI TGGCCA 1 cut(s) 195
MlyI GAGTC 2 cut(s) 221, 308
MmeI TCCRAC 3 cut(s) 585, 984, 1147
Mox20I TGGCCA 1 cut(s) 195
MroXI GAANNNNTTC 1 cut(s) 866
MscI TGGCCA 1 cut(s) 195
MseI TTAA 2 cut(s) 1172, 1243
MslI CAYNNNNRTG 1 cut(s) 251
Msp20I TGGCCA 1 cut(s) 195
MspA1I CMGCKG 3 cut(s) 85, 188, 287
MspI CCGG 3 cut(s) 311, 721, 1128
MspR9I CCNGG 6 cut(s) 311, 721, 807, 910, 948, 1128
MunI CAATTG 1 cut(s) 797
MvaI CCWGG 3 cut(s) 807, 910, 948
MvnI CGCG 2 cut(s) 188, 287
MwoI GCNNNNNNNGC 7 cut(s) 11, 243, 538, 1062, 1140, 1211, 1238
NciI CCSGG 3 cut(s) 311, 721, 1128
NdeI CATATG 1 cut(s) 350
NdeII GATC 5 cut(s) 436, 583, 748, 1041, 1176
NlaIII CATG 8 cut(s) 48, 183, 256, 445, 506, 654, 673, 921
NlaIV GGNNCC 5 cut(s) 283, 291, 522, 599, 898
NmuCI GTSAC 3 cut(s) 403, 683, 1093
NspI RCATGY 2 cut(s) 48, 183
PagI TCATGA 1 cut(s) 252
PaqCI CACCTGC 2 cut(s) 109, 944
PciI ACATGT 1 cut(s) 44
PciSI GCTCTTC 2 cut(s) 151, 236
PdmI GAANNNNTTC 1 cut(s) 866
PfeI GAWTC 3 cut(s) 550, 802, 951
PflMI CCANNNNNTGG 2 cut(s) 373, 909
PfoI TCCNGGA 1 cut(s) 908
PkrI GCNGC 5 cut(s) 117, 223, 286, 1133, 1197
PleI GAGTC 2 cut(s) 221, 308
PpsI GAGTC 2 cut(s) 221, 308
PpuMI RGGWCCY 1 cut(s) 598
PscI ACATGT 1 cut(s) 44
Psp124BI GAGCTC 1 cut(s) 534
Psp5II RGGWCCY 1 cut(s) 598
Psp6I CCWGG 3 cut(s) 805, 908, 946
PspFI CCCAGC 2 cut(s) 81, 85
PspGI CCWGG 3 cut(s) 805, 908, 946
PspN4I GGNNCC 5 cut(s) 283, 291, 522, 599, 898
PspPI GGNCC 3 cut(s) 520, 598, 968
PspPPI RGGWCCY 1 cut(s) 598
PsuI RGATCY 1 cut(s) 1176
PvuII CAGCTG 1 cut(s) 85
RsaI GTAC 1 cut(s) 764
RsaNI GTAC 1 cut(s) 763
RseI CAYNNNNRTG 1 cut(s) 251
SacI GAGCTC 1 cut(s) 534
SacII CCGCGG 2 cut(s) 189, 288
SapI GCTCTTC 2 cut(s) 151, 236
SaqAI TTAA 2 cut(s) 1172, 1243
SatI GCNGC 5 cut(s) 116, 222, 285, 1132, 1196
Sau3AI GATC 5 cut(s) 436, 583, 748, 1041, 1176
Sau96I GGNCC 3 cut(s) 520, 598, 968
SchI GAGTC 2 cut(s) 221, 308
ScrFI CCNGG 6 cut(s) 311, 721, 807, 910, 948, 1128
SduI GDGCHC 3 cut(s) 248, 534, 899
SfaNI GCATC 5 cut(s) 74, 624, 708, 727, 760
Sfr303I CCGCGG 2 cut(s) 189, 288
SgrBI CCGCGG 2 cut(s) 189, 288
SinI GGWCC 2 cut(s) 520, 598
SmiMI CAYNNNNRTG 1 cut(s) 251
SmlI CTYRAG 1 cut(s) 692
SmoI CTYRAG 1 cut(s) 692
Sse9I AATT 5 cut(s) 6, 657, 797, 863, 1019
SsiI CCGC 6 cut(s) 186, 188, 237, 285, 287, 674
SspMI CTAG 1 cut(s) 218
SstI GAGCTC 1 cut(s) 534
StyD4I CCNGG 6 cut(s) 309, 719, 805, 908, 946, 1126
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 3 cut(s) 205, 346, 689
TaqI TCGA 3 cut(s) 317, 483, 735
TasI AATT 5 cut(s) 6, 657, 797, 863, 1019
TauI GCSGC 1 cut(s) 287
TfiI GAWTC 3 cut(s) 550, 802, 951
Tru1I TTAA 2 cut(s) 1172, 1243
Tru9I TTAA 2 cut(s) 1172, 1243
TscAI CASTG 2 cut(s) 780, 1150
TseFI GTSAC 3 cut(s) 403, 683, 1093
TseI GCWGC 4 cut(s) 115, 221, 1131, 1195
Tsp45I GTSAC 3 cut(s) 403, 683, 1093
TspDTI ATGAA 3 cut(s) 39, 241, 863
TspRI CASTG 2 cut(s) 780, 1150
Van91I CCANNNNNTGG 2 cut(s) 373, 909
VpaK11BI GGWCC 2 cut(s) 520, 598
XapI RAATTY 2 cut(s) 657, 863
XceI RCATGY 2 cut(s) 48, 183
XcmI CCANNNNNNNNNTGG 1 cut(s) 89
XmiI GTMKAC 1 cut(s) 879
XmnI GAANNNNTTC 1 cut(s) 866
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.