Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000394.1

Orthogroup ID

OG0014052

Physical Location & Seq

Genomic Coordinates Forward (+)

121274 .. 123945

Gene Structure 2672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000394.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

atggccatttgtgcagtccacacaagtactcagttcaacccaacatgctcatcaatctccaccccctcaaaatcccacttgggattctgccaaagacaacaagtagtgttctacaccaagaggagtagcaagagatccaccccatgcgtaggtctgatagcttgcgccgcgggtggccaggagacggtggtgattggcctcgccgccgactccggttgcgggaagagcacattcatgaggaggttgacaagtgtgtttggaggagcagcagagccaccaaagggaggcaacccagactccaacactttgataagtgacaccaccactgtgatatgcttggatgattaccactcacttgataggactggaaggaaggagaagggagtcactgctcttgacccaagagccaacgactttgacctcatgtatgagcaagtcaaggctatcaaggatggcaaggctgttgataaacccatatacaaccatgttagtggactcttggaccctccagagcttatcaagcccccaaagatccttgtcattgaaggcttgcacccaatgtacgaccagcgagtcagggacctcttggacttcagtatctacttggacatcagcaatgaggttaagtttgcatggaaaattcagagggacatggccgagcgtggacacagtctcgagagcatcaaagccagtatcgaagcccgaaagcccgattttgacgcttatattgatccacaaaagcagtatgctgatgcagtcattgaagtgttgccaaccgaactcattccaggagacaatgagggcaaggttttgagagtgaggttgataatgaaggagggagtcaagttcttcaacccagtctacttgtttgatgagggctctaccatctcatggataccatgcggaaggaagcttacttgctcttaccctggaatcaaattcacctatggccctgacacttactatggccatgaggtgtcagtgttggagatggatggacagtttgacagattagatgagctgatctatgtagaaagccatctaagcaacatctccaccaagttctacggagaagtcacgcaacagatgttgaagcattccgatttccccgggagcaacaacgggactggtctcttccaaaccatcgttggattgaagatcagagacctctatgagcagctcattgcaagcaaggccaaaagaccagcagaagcaaaagcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00710 ko01100 ko01120 ko01200 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

PRK

Protein Analysis

407

Amino Acids

45.14

Weight (kDa)

6.33

Isoelectric Point (pI)

27.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32060
fragaria_vesca	FvH4_5g23520
malus_domestica	MD00G1068500.v1.1 MD06G1023500.v1.1
prunus_persica	Prupe.5G024600_v2.0.a1
pyrus_communis	pycom06g01910 pycom16g25320
rosa_chinensis	RchiOBHm_Chr7g0212791
rosa_laevigata	RLG00000002868
rosa_multiflora	Rmu_sc0000394.1_g000036
rosa_roxburghii	Rroxscaffold_3G00246550
rosa_rugosa	Rorug07G0136800
rosa_samantha	Rh7AG268300 Rh7BG263700 Rh7CG287300
rosa_wichuraiana	Rw7G023180 Rw7G023290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	572
AccB7I	CCANNNNNTGG	1 cut(s)	891
AccI	GTMKAC	1 cut(s)	861
AccII	CGCG	1 cut(s)	170
AciI	CCGC	5 cut(s)	168, 170, 204, 219, 903
AclWI	GGATC	3 cut(s)	129, 526, 725
AcoI	YGGCCR	4 cut(s)	3, 175, 654, 967
AcsI	RAATTY	2 cut(s)	639, 938
AcuI	CTGAAG	1 cut(s)	577
AfaI	GTAC	2 cut(s)	28, 563
AfiI	CCNNNNNNNGG	6 cut(s)	149, 184, 219, 281, 284, 891
AgsI	TTSAA	6 cut(s)	37, 545, 764, 853, 1093, 1156
AjnI	CCWGG	3 cut(s)	177, 787, 928
AleI	CACNNNNGTG	1 cut(s)	326
AluBI	AGCT	6 cut(s)	161, 514, 913, 1021, 1180, 1220
AluI	AGCT	6 cut(s)	161, 514, 913, 1021, 1180, 1220
Alw21I	GWGCWC	1 cut(s)	230
Alw26I	GTCTC	5 cut(s)	176, 677, 786, 1136, 1158
AlwI	GGATC	3 cut(s)	129, 526, 725
Ama87I	CYCGRG	2 cut(s)	674, 1109
AoxI	GGCC	7 cut(s)	3, 175, 196, 654, 949, 967, 1194
ApeKI	GCWGC	2 cut(s)	266, 1177
ApoI	RAATTY	2 cut(s)	639, 938
Asp700I	GAANNNNTTC	1 cut(s)	783
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	3 cut(s)	502, 580, 950
AsuC2I	CCSGG	2 cut(s)	1110, 1111
AsuHPI	GGTGA	2 cut(s)	202, 934
AvaI	CYCGRG	2 cut(s)	674, 1109
AvaII	GGWCC	2 cut(s)	502, 580
BaeI	ACNNNNGTAYC	2 cut(s)	580, 613
BalI	TGGCCA	3 cut(s)	5, 177, 969
BanII	GRGCYC	1 cut(s)	881
BarI	GAAGNNNNNNTAC	2 cut(s)	898, 930
Bbv12I	GWGCWC	1 cut(s)	230
BbvI	GCAGC	2 cut(s)	278, 1189
BccI	CCATC	6 cut(s)	446, 893, 985, 989, 1047, 1151
BciT130I	CCWGG	3 cut(s)	179, 789, 930
BciVI	GTATCC	1 cut(s)	888
BcnI	CCSGG	2 cut(s)	1110, 1111
BcoDI	GTCTC	5 cut(s)	176, 677, 786, 1136, 1158
BfuI	GTATCC	1 cut(s)	888
BisI	GCNGC	4 cut(s)	168, 204, 267, 1178
BlsI	GCNGC	4 cut(s)	169, 205, 268, 1179
BmcAI	AGTACT	1 cut(s)	28
Bme1390I	CCNGG	5 cut(s)	179, 789, 930, 1110, 1111
Bme18I	GGWCC	2 cut(s)	502, 580
BmeT110I	CYCGRG	2 cut(s)	674, 1109
BmgT120I	GGNCC	3 cut(s)	502, 580, 950
BmiI	GGNNCC	2 cut(s)	504, 581
BmrFI	CCNGG	5 cut(s)	179, 789, 930, 1110, 1111
BmrI	ACTGGG	1 cut(s)	851
BmsI	GCATC	2 cut(s)	690, 742
BmuI	ACTGGG	1 cut(s)	851
BpmI	CTGGAG	1 cut(s)	492
BpuMI	CCSGG	2 cut(s)	1110, 1111
BsaI	GGTCTC	2 cut(s)	1136, 1158
BsaJI	CCNNGG	4 cut(s)	168, 928, 1108, 1109
BsaWI	WCCGGW	1 cut(s)	212
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bsc4I	CCNNNNNNNGG	6 cut(s)	149, 184, 219, 281, 284, 891
Bse1I	ACTGG	4 cut(s)	370, 690, 857, 1132
Bse3DI	GCAATG	2 cut(s)	622, 1182
BseBI	CCWGG	3 cut(s)	179, 789, 930
BseDI	CCNNGG	4 cut(s)	168, 928, 1108, 1109
BseGI	GGATG	3 cut(s)	346, 457, 1000
BseLI	CCNNNNNNNGG	6 cut(s)	149, 184, 219, 281, 284, 891
BseMI	GCAATG	2 cut(s)	622, 1182
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	4 cut(s)	370, 690, 857, 1132
BseRI	GAGGAG	3 cut(s)	136, 253, 276
BseXI	GCAGC	2 cut(s)	278, 1189
BsgI	GTGCAG	1 cut(s)	33
Bsh1236I	CGCG	1 cut(s)	170
BshFI	GGCC	7 cut(s)	5, 177, 198, 656, 951, 969, 1196
BsiHKAI	GWGCWC	1 cut(s)	230
BsiHKCI	CYCGRG	2 cut(s)	674, 1109
BsiSI	CCGG	2 cut(s)	213, 1110
BslFI	GGGAC	3 cut(s)	593, 662, 1138
BslI	CCNNNNNNNGG	6 cut(s)	149, 184, 219, 281, 284, 891
BsmAI	GTCTC	5 cut(s)	176, 677, 786, 1136, 1158
BsmBI	CGTCTC	1 cut(s)	176
BsmFI	GGGAC	3 cut(s)	593, 662, 1138
BsmI	GAATGC	1 cut(s)	1096
BsnI	GGCC	7 cut(s)	5, 177, 198, 656, 951, 969, 1196
Bso31I	GGTCTC	2 cut(s)	1136, 1158
BsoBI	CYCGRG	2 cut(s)	674, 1109
Bsp1286I	GDGCHC	2 cut(s)	230, 881
Bsp143I	GATC	5 cut(s)	134, 531, 730, 1023, 1158
BspACI	CCGC	5 cut(s)	168, 170, 204, 219, 903
BspANI	GGCC	7 cut(s)	5, 177, 198, 656, 951, 969, 1196
BspCNI	CTCAG	1 cut(s)	43
BspFNI	CGCG	1 cut(s)	170
BspHI	TCATGA	1 cut(s)	234
BspLI	GGNNCC	2 cut(s)	504, 581
BspPI	GGATC	3 cut(s)	129, 526, 725
BspQI	GCTCTTC	1 cut(s)	218
BspTNI	GGTCTC	2 cut(s)	1136, 1158
BsrDI	GCAATG	2 cut(s)	622, 1182
BsrI	ACTGG	4 cut(s)	370, 690, 857, 1132
BssECI	CCNNGG	4 cut(s)	168, 928, 1108, 1109
BssMI	GATC	5 cut(s)	134, 531, 730, 1023, 1158
Bst2UI	CCWGG	3 cut(s)	179, 789, 930
Bst4CI	ACNGT	4 cut(s)	187, 328, 671, 1002
Bst6I	CTCTTC	2 cut(s)	218, 1139
BstC8I	GCNNGC	3 cut(s)	163, 551, 1189
BstDEI	CTNAG	2 cut(s)	30, 1043
BstDSI	CCRYGG	1 cut(s)	168
BstF5I	GGATG	3 cut(s)	346, 457, 1000
BstFNI	CGCG	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	5 cut(s)	137, 534, 733, 1026, 1161
BstMAI	GTCTC	5 cut(s)	176, 677, 786, 1136, 1158
BstMBI	GATC	5 cut(s)	134, 531, 730, 1023, 1158
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 167, 225, 520, 1044, 1193
BstNI	CCWGG	3 cut(s)	179, 789, 930
BstNSI	RCATGY	1 cut(s)	48
BstSCI	CCNGG	5 cut(s)	177, 787, 928, 1108, 1109
BstUI	CGCG	1 cut(s)	170
BstV1I	GCAGC	2 cut(s)	278, 1189
BstX2I	RGATCY	2 cut(s)	134, 531
BstXI	CCANNNNNNTGG	1 cut(s)	491
BstYI	RGATCY	2 cut(s)	134, 531
BsuI	GTATCC	1 cut(s)	888
BsuRI	GGCC	7 cut(s)	5, 177, 198, 656, 951, 969, 1196
BtgI	CCRYGG	1 cut(s)	168
BtsCI	GGATG	3 cut(s)	346, 457, 1000
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	3 cut(s)	324, 387, 987
Cac8I	GCNNGC	3 cut(s)	163, 551, 1189
CciI	TCATGA	1 cut(s)	234
CfoI	GCGC	1 cut(s)	167
Cfr13I	GGNCC	3 cut(s)	502, 580, 950
Cfr42I	CCGCGG	1 cut(s)	171
Cfr9I	CCCGGG	1 cut(s)	1109
CseI	GACGC	1 cut(s)	728
Csp6I	GTAC	2 cut(s)	27, 562
CviQI	GTAC	2 cut(s)	27, 562
DdeI	CTNAG	2 cut(s)	30, 1043
DpnI	GATC	5 cut(s)	136, 533, 732, 1025, 1160
DpnII	GATC	5 cut(s)	134, 531, 730, 1023, 1158
DrdI	GACNNNNNNGTC	1 cut(s)	572
DseDI	GACNNNNNNGTC	1 cut(s)	572
EaeI	YGGCCR	4 cut(s)	3, 175, 654, 967
Eam1104I	CTCTTC	2 cut(s)	218, 1139
EarI	CTCTTC	2 cut(s)	218, 1139
Eco24I	GRGCYC	1 cut(s)	881
Eco31I	GGTCTC	2 cut(s)	1136, 1158
Eco47I	GGWCC	2 cut(s)	502, 580
Eco57I	CTGAAG	1 cut(s)	577
Eco88I	CYCGRG	2 cut(s)	674, 1109
EcoO109I	RGGNCCY	1 cut(s)	580
EcoRII	CCWGG	3 cut(s)	177, 787, 928
EcoT38I	GRGCYC	1 cut(s)	881
Esp3I	CGTCTC	1 cut(s)	176
FaqI	GGGAC	3 cut(s)	593, 662, 1138
FauI	CCCGC	2 cut(s)	163, 212
FblI	GTMKAC	1 cut(s)	861
Fnu4HI	GCNGC	4 cut(s)	168, 204, 267, 1178
FokI	GGATG	3 cut(s)	353, 464, 1007
FriOI	GRGCYC	1 cut(s)	881
Fsp4HI	GCNGC	4 cut(s)	168, 204, 267, 1178
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	4 cut(s)	168, 204, 267, 1178
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	7 cut(s)	5, 177, 198, 656, 951, 969, 1196
HapII	CCGG	2 cut(s)	213, 1110
HgaI	GACGC	1 cut(s)	728
HhaI	GCGC	1 cut(s)	167
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HindIII	AAGCTT	2 cut(s)	911, 1218
HinfI	GANTC	8 cut(s)	84, 209, 296, 384, 495, 573, 840, 933
HpaII	CCGG	2 cut(s)	213, 1110
HphI	GGTGA	2 cut(s)	202, 934
Hpy166II	GTNNAC	5 cut(s)	19, 246, 494, 665, 862
Hpy188I	TCNGA	4 cut(s)	156, 645, 1102, 1163
Hpy188III	TCNNGA	5 cut(s)	235, 395, 509, 674, 676
Hpy8I	GTNNAC	5 cut(s)	19, 246, 494, 665, 862
HpyAV	CCTTC	6 cut(s)	363, 367, 373, 539, 826, 900
HpyCH4III	ACNGT	4 cut(s)	187, 328, 671, 1002
HpyCH4V	TGCA	5 cut(s)	14, 553, 632, 755, 1187
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 167, 225, 520, 1044, 1193
HpyF3I	CTNAG	2 cut(s)	30, 1043
HspAI	GCGC	1 cut(s)	165
KspI	CCGCGG	1 cut(s)	171
Kzo9I	GATC	5 cut(s)	134, 531, 730, 1023, 1158
LguI	GCTCTTC	1 cut(s)	218
LmnI	GCTCC	2 cut(s)	263, 1113
Lsp1109I	GCAGC	2 cut(s)	278, 1189
LweI	GCATC	2 cut(s)	690, 742
MaeIII	GTNAC	3 cut(s)	314, 385, 1075
MalI	GATC	5 cut(s)	136, 533, 732, 1025, 1160
MboI	GATC	5 cut(s)	134, 531, 730, 1023, 1158
MboII	GAAGA	4 cut(s)	235, 841, 1126, 1168
MflI	RGATCY	2 cut(s)	134, 531
MhlI	GDGCHC	2 cut(s)	230, 881
MlsI	TGGCCA	3 cut(s)	5, 177, 969
MluCI	AATT	2 cut(s)	639, 938
MluNI	TGGCCA	3 cut(s)	5, 177, 969
MlyI	GAGTC	6 cut(s)	203, 290, 393, 489, 582, 849
MmeI	TCCRAC	3 cut(s)	324, 966, 1129
Mox20I	TGGCCA	3 cut(s)	5, 177, 969
MroXI	GAANNNNTTC	1 cut(s)	783
MscI	TGGCCA	3 cut(s)	5, 177, 969
MseI	TTAA	2 cut(s)	624, 1222
MslI	CAYNNNNRTG	4 cut(s)	233, 326, 489, 764
Msp20I	TGGCCA	3 cut(s)	5, 177, 969
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	2 cut(s)	213, 1110
MspR9I	CCNGG	5 cut(s)	179, 789, 930, 1110, 1111
Mva1269I	GAATGC	1 cut(s)	1096
MvaI	CCWGG	3 cut(s)	179, 789, 930
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	6 cut(s)	11, 167, 225, 520, 1044, 1193
NciI	CCSGG	2 cut(s)	1110, 1111
NdeII	GATC	5 cut(s)	134, 531, 730, 1023, 1158
NlaIV	GGNNCC	2 cut(s)	504, 581
NmeAIII	GCCGAG	1 cut(s)	682
NmuCI	GTSAC	3 cut(s)	314, 385, 1075
NspI	RCATGY	1 cut(s)	48
OliI	CACNNNNGTG	1 cut(s)	326
PaeR7I	CTCGAG	1 cut(s)	674
PagI	TCATGA	1 cut(s)	234
PciSI	GCTCTTC	1 cut(s)	218
PctI	GAATGC	1 cut(s)	1096
PdmI	GAANNNNTTC	1 cut(s)	783
PfeI	GAWTC	2 cut(s)	84, 933
PflFI	GACNNNGTC	1 cut(s)	669
PflMI	CCANNNNNTGG	1 cut(s)	891
PfoI	TCCNGGA	1 cut(s)	787
PkrI	GCNGC	4 cut(s)	169, 205, 268, 1179
PleI	GAGTC	6 cut(s)	203, 290, 392, 489, 581, 848
PpsI	GAGTC	6 cut(s)	203, 290, 392, 489, 581, 848
PpuMI	RGGWCCY	1 cut(s)	580
Psp5II	RGGWCCY	1 cut(s)	580
Psp6I	CCWGG	3 cut(s)	177, 787, 928
PspGI	CCWGG	3 cut(s)	177, 787, 928
PspN4I	GGNNCC	2 cut(s)	504, 581
PspPI	GGNCC	3 cut(s)	502, 580, 950
PspPPI	RGGWCCY	1 cut(s)	580
PsuI	RGATCY	2 cut(s)	134, 531
PsyI	GACNNNGTC	1 cut(s)	669
RsaI	GTAC	2 cut(s)	28, 563
RsaNI	GTAC	2 cut(s)	27, 562
RseI	CAYNNNNRTG	4 cut(s)	233, 326, 489, 764
SacII	CCGCGG	1 cut(s)	171
SapI	GCTCTTC	1 cut(s)	218
SaqAI	TTAA	2 cut(s)	624, 1222
SatI	GCNGC	4 cut(s)	168, 204, 267, 1178
Sau3AI	GATC	5 cut(s)	134, 531, 730, 1023, 1158
Sau96I	GGNCC	3 cut(s)	502, 580, 950
ScaI	AGTACT	1 cut(s)	28
SchI	GAGTC	6 cut(s)	203, 290, 393, 489, 582, 849
ScrFI	CCNGG	5 cut(s)	179, 789, 930, 1110, 1111
SduI	GDGCHC	2 cut(s)	230, 881
SfaNI	GCATC	2 cut(s)	690, 742
Sfr274I	CTCGAG	1 cut(s)	674
Sfr303I	CCGCGG	1 cut(s)	171
SgrBI	CCGCGG	1 cut(s)	171
SinI	GGWCC	2 cut(s)	502, 580
SlaI	CTCGAG	1 cut(s)	674
SmaI	CCCGGG	1 cut(s)	1111
SmiMI	CAYNNNNRTG	4 cut(s)	233, 326, 489, 764
SmlI	CTYRAG	1 cut(s)	674
SmoI	CTYRAG	1 cut(s)	674
Sse9I	AATT	2 cut(s)	639, 938
SsiI	CCGC	5 cut(s)	168, 170, 204, 219, 903
StyD4I	CCNGG	5 cut(s)	177, 787, 928, 1108, 1109
TaaI	ACNGT	4 cut(s)	187, 328, 671, 1002
TaqI	TCGA	2 cut(s)	675, 696
TasI	AATT	2 cut(s)	639, 938
TatI	WGTACW	1 cut(s)	26
TauI	GCSGC	2 cut(s)	170, 206
TfiI	GAWTC	2 cut(s)	84, 933
Tru1I	TTAA	2 cut(s)	624, 1222
Tru9I	TTAA	2 cut(s)	624, 1222
TscAI	CASTG	3 cut(s)	331, 394, 987
TseFI	GTSAC	3 cut(s)	314, 385, 1075
TseI	GCWGC	2 cut(s)	266, 1177
Tsp45I	GTSAC	3 cut(s)	314, 385, 1075
TspDTI	ATGAA	2 cut(s)	223, 845
TspGWI	ACGGA	1 cut(s)	1083
TspMI	CCCGGG	1 cut(s)	1109
TspRI	CASTG	3 cut(s)	331, 394, 987
Tth111I	GACNNNGTC	1 cut(s)	669
Van91I	CCANNNNNTGG	1 cut(s)	891
VpaK11BI	GGWCC	2 cut(s)	502, 580
XapI	RAATTY	2 cut(s)	639, 938
XceI	RCATGY	1 cut(s)	48
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1145
XhoI	CTCGAG	1 cut(s)	674
XmaI	CCCGGG	1 cut(s)	1109
XmiI	GTMKAC	1 cut(s)	861
XmnI	GAANNNNTTC	1 cut(s)	783
ZrmI	AGTACT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.