Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0012137

Physical Location & Seq

Genomic Coordinates Reverse (-)

16967505 .. 16969145

Gene Structure 1641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g25500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1641 bp

ATGGCGGAACCCCAAATCTCCAAGACGTTCCCAGTGAAACCCAAGCAGAAACCGAAGCCGCGCACCCCAAAGCAAACCCCAGAATCCAGGTACTGGTCATCCTTCAAAACCAAGCAAATCCCTAATCTCATCTCCTCCATCAACTCCCTCACCTTCTCCCCCGCCGCCCCTCACTCCTTGGCCGCCGCCCACTCCACCTCCCTCACCCTCTACAACCCCCAATCCCTCTTCTCCTCCCAGCCCTCCAAAATCTCCCTCAACGACGTCGTCTCCTCCGCCTCCTTCCGCTCCGACGGCCGCCTCATCGCCGCCGCCGACCTCTCCGGCCTCGTCCAAGTCTTCGACGTCAAGACCCGCACCCCTCTCCGCCGCCTCCGCTCCCACACCCGCCCCGTCCGCTTCGTCAAGTTCCCCCTCCACGACAAGCTCCACCTCGTCTCCGGCGGCGACGACGCCGTCGTCAAGTACTGGGACGTCGCCGGCGAGACCACAATCTGCGACTTTCTAGGGCACAAGGACTACGTGCGCTGCGGCGATTGGTCCCCTAATGATTCCAACATGTTCGTCACCGGGTCGTATGATCACACTGTGAAGCTCTGGGATGTGAGGGATAAGGATTCTTCGAGCTCCGTTACGGAGGTGAACCACGGCAAGCCGGTGGAGGACGTCATGTTCTTGCCCTCTGGCGGGTTGATTGCGACCGCGGGGGGGGATTCGGTGAAGATTTGGGACTTGATTGGGGGAGGGAAGCTGGTGTATTCAATGGAGAGCCATAACAAGACGGTGACTTCGATTTGTGTTGGGAAAGTTGGGAAGCTCAGTGGGGAGGAGGCTCAGCAGTATCGGATTTTGAGTGTGGCATTGGATGGTTACTTGAAGGTTTTCGACTATGCCAAAATGAGGGTTACTCATTCAATGAGGTTCCCTGCTCCGCTCATGTCGGTGGGGTTTTCTCCCGATTGTATGACTAGGGTGATTGGAACCTCGAATGGGATAATATATGCTGGGAGGAGGAAGAGCAAGGAAGATGTGGAGAGTGGTTCTGATGAGGAGGTTACGAAATATGAGAGGAGATTGAAGAGGTTGGGTTCCGGGAATGCTTTGGGGTTGGGGCCTGTGGCGGAGGAGCCACGGATGCGGGTTTTGAAGCCTACGAGTTTTCGGTATTTTCATAGAGGGCAGTCAGAGAAGCCTTCTGAGAGAGATTATCTGGTGATGAGGCCGAAGAAAGTGAAGTTAGGGGAGCATGACAGGCTGTTGAAGAAGTTTAGGCATAAGGAAGCTCTGGTGTCTGTGTTAGGGAGAAGTAAGAATCCGGAGAATGCTGTGGCTGTGATGGAGGAGTTGGTATCAAGAAAGAAGTTGCTGAAATGTGTTTCAAATTTGGATTTGGAGGAGCTCCGAGTGTTGCTGTTGTTTTTGCAGAAGCACTGTACCATGCCAAGGTACGGGAGGTTGTTGATGGGGTTGACAGAGAAGGTTATTGAGATGAGGGCTGACGACATTAGAGCTTCTACAGAGTTGAAGGGTCTTATTAGAAACATCAAACGTGCTGTCGAAGAGGAAATACGAATACAACTATCTTTGCAAGAGATACAGGGTGTGATTTCTCCTTTGTTGAGGATAACTGGAAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031461 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

UTP15_C WD40

Protein Analysis

547

Amino Acids

61.17

Weight (kDa)

9.71

Isoelectric Point (pI)

47.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Prp19	PF24814	45 - 158	5.7e-10	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	45 - 160	3.5e-10	THOC3 beta-propeller domain
WDR55	PF24796	46 - 176	1.1e-07	WDR55
Beta-prop_EML_2	PF23414	49 - 184	3.4e-08	Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz	PF24807	49 - 265	4.2e-22	CDC20/Fizzy WD40 domain
WDR55	PF24796	81 - 238	1.4e-13	WDR55
Beta-prop_WDR36-Utp21_2nd	PF25168	81 - 176	5.5e-06	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	87 - 239	5.5e-22	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	88 - 264	4.3e-30	WDR5 beta-propeller domain
WD40_Gbeta	PF25391	90 - 273	4.8e-16	G protein beta WD-40 repeat protein
WD40_MABP1-WDR62_2nd	PF24782	97 - 265	1.1e-06	MABP1/WDR62 second WD40 domain
Beta-prop_WDR41	PF25178	110 - 244	2.8e-07	WDR41
Beta-prop_EML	PF23409	110 - 287	3e-10	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_TEP1_2nd	PF25047	118 - 294	8.6e-12	TEP-1 second beta-propeller
EIF3I	PF24805	125 - 234	6.8e-08	EIF3I
WD40_WDHD1_1st	PF24817	129 - 212	1.4e-06	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	144 - 245	6.9e-16	THOC3 beta-propeller domain
WD40_Prp19	PF24814	145 - 264	2.2e-14	Prp19 WD40 domain
WD40	PF00400	166 - 201	1.4e-07	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	166 - 273	9.9e-09	WDR3 second beta-propeller domain
Beta-prop_EIPR1	PF23609	169 - 258	2.4e-06	EIPR1 beta-propeller
Beta-prop_RIG_2nd	PF23775	170 - 232	2.3e-06	RIG second beta-propeller
WD40_Prp19	PF24814	175 - 333	1.3e-12	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	184 - 304	9.8e-07	WDHD1 first WD40 domain
Beta-prop_WDR3_1st	PF25173	208 - 323	6.6e-06	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	216 - 322	4.6e-06	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	216 - 351	2.1e-07	THOC3 beta-propeller domain
UTP15_C	PF09384	396 - 539	4.7e-37	UTP15 C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47990
fragaria_vesca	FvH4_5g25500
malus_domestica	MD03G1274200.v1.1 MD11G1296600.v1.1
prunus_persica	Prupe.1G201800_v2.0.a1 Prupe.1G201800_v2.0.a1
pyrus_communis	pycom03g21860
rosa_chinensis	RchiOBHm_Chr7g0215731
rosa_laevigata	RLG00000002628 RLG00000002630
rosa_multiflora	Rmu_sc0000898.1_g000015
rosa_roxburghii	Rroxscaffold_3G00243890
rosa_rugosa	Rorug07G0156300
rosa_samantha	Rh7AG293400 Rh7BG285700 Rh7CG313600 Rh7CG313800 Rh7DG296700
rosa_wichuraiana	Rw7G024970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	455, 458
AatII	GACGTC	4 cut(s)	267, 348, 477, 669
AccB7I	CCANNNNNTGG	1 cut(s)	93
AccBSI	CCGCTC	3 cut(s)	288, 378, 934
AccII	CGCG	2 cut(s)	61, 704
AccIII	TCCGGA	1 cut(s)	1315
AcoI	YGGCCR	2 cut(s)	180, 295
AcsI	RAATTY	1 cut(s)	1381
AcyI	GRCGYC	5 cut(s)	264, 345, 453, 474, 666
AdeI	CACNNNGTG	1 cut(s)	589
AfaI	GTAC	4 cut(s)	92, 467, 1435, 1448
AfiI	CCNNNNNNNGG	8 cut(s)	93, 686, 687, 708, 900, 990, 1443, 1448
AflIII	ACRYGT	1 cut(s)	558
AgsI	TTSAA	9 cut(s)	106, 762, 877, 915, 1078, 1147, 1261, 1380, 1525
AjnI	CCWGG	1 cut(s)	86
AloI	GAACNNNNNNTCC	2 cut(s)	656, 688
AluBI	AGCT	8 cut(s)	427, 595, 627, 751, 817, 1283, 1399, 1511
AluI	AGCT	8 cut(s)	427, 595, 627, 751, 817, 1283, 1399, 1511
Alw21I	GWGCWC	2 cut(s)	629, 1401
Alw26I	GTCTC	3 cut(s)	274, 442, 479
AlwNI	CAGNNNCTG	1 cut(s)	93
Aor13HI	TCCGGA	1 cut(s)	1315
AoxI	GGCC	5 cut(s)	180, 295, 325, 1112, 1220
ApeKI	GCWGC	1 cut(s)	528
ApoI	RAATTY	1 cut(s)	1381
ArsI	GACNNNNNNTTYG	4 cut(s)	772, 804, 1539, 1571
Asp700I	GAANNNNTTC	1 cut(s)	881
AspLEI	GCGC	2 cut(s)	63, 528
AspS9I	GGNCC	2 cut(s)	540, 1112
AsuC2I	CCSGG	2 cut(s)	571, 1093
AsuHPI	GGTGA	8 cut(s)	142, 196, 559, 652, 730, 796, 985, 1225
AvaII	GGWCC	1 cut(s)	540
BaeGI	GKGCMC	1 cut(s)	513
BanII	GRGCYC	2 cut(s)	629, 1401
BarI	GAAGNNNNNNTAC	2 cut(s)	1551, 1583
BbsI	GAAGAC	1 cut(s)	331
Bbv12I	GWGCWC	2 cut(s)	629, 1401
BbvI	GCAGC	1 cut(s)	515
BccI	CCATC	4 cut(s)	146, 860, 1330, 1456
BceAI	ACGGC	3 cut(s)	310, 440, 664
BciT130I	CCWGG	1 cut(s)	88
BclI	TGATCA	1 cut(s)	580
BcnI	CCSGG	2 cut(s)	571, 1093
BcoDI	GTCTC	3 cut(s)	274, 442, 479
BfaI	CTAG	2 cut(s)	506, 969
BfmI	CTRYAG	1 cut(s)	1515
BlpI	GCTNAGC	1 cut(s)	834
BmcAI	AGTACT	1 cut(s)	467
Bme1390I	CCNGG	3 cut(s)	88, 571, 1093
Bme18I	GGWCC	1 cut(s)	540
BmgT120I	GGNCC	2 cut(s)	540, 1112
BmiI	GGNNCC	7 cut(s)	9, 542, 923, 982, 1090, 1113, 1128
BmrFI	CCNGG	3 cut(s)	88, 571, 1093
BmrI	ACTGGG	2 cut(s)	26, 478
BmsI	GCATC	1 cut(s)	1125
BmuI	ACTGGG	2 cut(s)	26, 478
BpiI	GAAGAC	1 cut(s)	331
BplI	GAGNNNNNCTC	2 cut(s)	892, 924
Bpu1102I	GCTNAGC	1 cut(s)	834
BpuMI	CCSGG	2 cut(s)	571, 1093
BsaAI	YACGTR	1 cut(s)	523
BsaHI	GRCGYC	5 cut(s)	264, 345, 453, 474, 666
BsaI	GGTCTC	1 cut(s)	479
BsaJI	CCNNGG	5 cut(s)	177, 646, 702, 1130, 1442
BsaWI	WCCGGW	1 cut(s)	1315
BsaXI	ACNNNNNCTCC	6 cut(s)	182, 212, 254, 284, 422, 452
Bsc4I	CCNNNNNNNGG	8 cut(s)	93, 686, 687, 708, 900, 990, 1443, 1448
Bse118I	RCCGGY	2 cut(s)	479, 655
Bse1I	ACTGG	4 cut(s)	32, 98, 473, 1633
BseAI	TCCGGA	1 cut(s)	1315
BseBI	CCWGG	1 cut(s)	88
BseDI	CCNNGG	5 cut(s)	177, 646, 702, 1130, 1442
BseGI	GGATG	4 cut(s)	98, 607, 871, 1140
BseLI	CCNNNNNNNGG	8 cut(s)	93, 686, 687, 708, 900, 990, 1443, 1448
BseMII	CTCAG	3 cut(s)	832, 848, 1188
BseNI	ACTGG	4 cut(s)	32, 98, 473, 1633
BseSI	GKGCMC	1 cut(s)	513
BseX3I	CGGCCG	1 cut(s)	295
BseXI	GCAGC	1 cut(s)	515
BseYI	CCCAGC	2 cut(s)	237, 1004
Bsh1236I	CGCG	2 cut(s)	61, 704
Bsh1285I	CGRYCG	2 cut(s)	298, 702
BshFI	GGCC	5 cut(s)	182, 297, 327, 1114, 1222
BsiEI	CGRYCG	2 cut(s)	298, 702
BsiHKAI	GWGCWC	2 cut(s)	629, 1401
BsiSI	CCGG	7 cut(s)	324, 441, 480, 570, 656, 1092, 1316
BslFI	GGGAC	3 cut(s)	485, 526, 743
BslI	CCNNNNNNNGG	8 cut(s)	93, 686, 687, 708, 900, 990, 1443, 1448
BsmAI	GTCTC	3 cut(s)	274, 442, 479
BsmBI	CGTCTC	2 cut(s)	274, 442
BsmFI	GGGAC	3 cut(s)	485, 526, 743
BsmI	GAATGC	2 cut(s)	1102, 1327
BsnI	GGCC	5 cut(s)	182, 297, 327, 1114, 1222
Bso31I	GGTCTC	1 cut(s)	479
Bsp1286I	GDGCHC	3 cut(s)	513, 629, 1401
Bsp13I	TCCGGA	1 cut(s)	1315
Bsp143I	GATC	1 cut(s)	580
Bsp1720I	GCTNAGC	1 cut(s)	834
BspANI	GGCC	5 cut(s)	182, 297, 327, 1114, 1222
BspCNI	CTCAG	3 cut(s)	831, 847, 1189
BspEI	TCCGGA	1 cut(s)	1315
BspFNI	CGCG	2 cut(s)	61, 704
BspLI	GGNNCC	7 cut(s)	9, 542, 923, 982, 1090, 1113, 1128
BspQI	GCTCTTC	1 cut(s)	1010
BspTNI	GGTCTC	1 cut(s)	479
BsrBI	CCGCTC	3 cut(s)	288, 378, 934
BsrFI	RCCGGY	2 cut(s)	479, 655
BsrI	ACTGG	4 cut(s)	32, 98, 473, 1633
BssAI	RCCGGY	2 cut(s)	479, 655
BssECI	CCNNGG	5 cut(s)	177, 646, 702, 1130, 1442
BssMI	GATC	1 cut(s)	580
BssNI	GRCGYC	5 cut(s)	264, 345, 453, 474, 666
BssT1I	CCWWGG	2 cut(s)	177, 1442
Bst2UI	CCWGG	1 cut(s)	88
Bst4CI	ACNGT	3 cut(s)	589, 784, 1433
Bst6I	CTCTTC	4 cut(s)	233, 1010, 1073, 1554
BstACI	GRCGYC	5 cut(s)	264, 345, 453, 474, 666
BstBAI	YACGTR	1 cut(s)	523
BstC8I	GCNNGC	2 cut(s)	481, 653
BstDEI	CTNAG	3 cut(s)	818, 834, 1197
BstDSI	CCRYGG	3 cut(s)	646, 702, 1130
BstF5I	GGATG	4 cut(s)	98, 607, 871, 1140
BstFNI	CGCG	2 cut(s)	61, 704
BstHHI	GCGC	2 cut(s)	63, 528
BstKTI	GATC	1 cut(s)	583
BstMAI	GTCTC	3 cut(s)	274, 442, 479
BstMBI	GATC	1 cut(s)	580
BstMCI	CGRYCG	2 cut(s)	298, 702
BstMWI	GCNNNNNNNGC	5 cut(s)	294, 375, 396, 1135, 1252
BstNI	CCWGG	1 cut(s)	88
BstNSI	RCATGY	1 cut(s)	562
BstSCI	CCNGG	3 cut(s)	86, 569, 1091
BstSFI	CTRYAG	1 cut(s)	1515
BstSLI	GKGCMC	1 cut(s)	513
BstUI	CGCG	2 cut(s)	61, 704
BstV1I	GCAGC	1 cut(s)	515
BstV2I	GAAGAC	1 cut(s)	331
BstZI	CGGCCG	1 cut(s)	295
BsuRI	GGCC	5 cut(s)	182, 297, 327, 1114, 1222
BtgI	CCRYGG	3 cut(s)	646, 702, 1130
BtgZI	GCGATG	1 cut(s)	289
BtsCI	GGATG	4 cut(s)	98, 607, 871, 1140
BtsIMutI	CAGTG	4 cut(s)	39, 585, 826, 1429
Cac8I	GCNNGC	2 cut(s)	481, 653
CaiI	CAGNNNCTG	1 cut(s)	93
CfoI	GCGC	2 cut(s)	63, 528
Cfr10I	RCCGGY	2 cut(s)	479, 655
Cfr13I	GGNCC	2 cut(s)	540, 1112
Cfr42I	CCGCGG	1 cut(s)	705
CseI	GACGC	1 cut(s)	461
Csp6I	GTAC	4 cut(s)	91, 466, 1434, 1447
CviAII	CATG	5 cut(s)	559, 670, 937, 1247, 1438
CviQI	GTAC	4 cut(s)	91, 466, 1434, 1447
DdeI	CTNAG	3 cut(s)	818, 834, 1197
DpnI	GATC	1 cut(s)	582
DpnII	GATC	1 cut(s)	580
DraIII	CACNNNGTG	1 cut(s)	589
DrdI	GACNNNNNNGTC	2 cut(s)	455, 458
DseDI	GACNNNNNNGTC	2 cut(s)	455, 458
EaeI	YGGCCR	2 cut(s)	180, 295
EagI	CGGCCG	1 cut(s)	295
Eam1104I	CTCTTC	4 cut(s)	233, 1010, 1073, 1554
EarI	CTCTTC	4 cut(s)	233, 1010, 1073, 1554
EciI	GGCGGA	4 cut(s)	20, 265, 356, 1136
Ecl136II	GAGCTC	2 cut(s)	627, 1399
EclXI	CGGCCG	1 cut(s)	295
Eco130I	CCWWGG	2 cut(s)	177, 1442
Eco24I	GRGCYC	2 cut(s)	629, 1401
Eco31I	GGTCTC	1 cut(s)	479
Eco47I	GGWCC	1 cut(s)	540
Eco52I	CGGCCG	1 cut(s)	295
Eco53kI	GAGCTC	2 cut(s)	627, 1399
EcoICRI	GAGCTC	2 cut(s)	627, 1399
EcoO109I	RGGNCCY	1 cut(s)	1112
EcoRII	CCWGG	1 cut(s)	86
EcoT14I	CCWWGG	2 cut(s)	177, 1442
EcoT38I	GRGCYC	2 cut(s)	629, 1401
ErhI	CCWWGG	2 cut(s)	177, 1442
Esp3I	CGTCTC	2 cut(s)	274, 442
FaeI	CATG	5 cut(s)	562, 673, 940, 1250, 1441
FaqI	GGGAC	3 cut(s)	485, 526, 743
FatI	CATG	5 cut(s)	558, 669, 936, 1246, 1437
FauI	CCCGC	6 cut(s)	169, 362, 395, 680, 697, 1131
FbaI	TGATCA	1 cut(s)	580
FokI	GGATG	4 cut(s)	85, 614, 878, 1147
FriOI	GRGCYC	2 cut(s)	629, 1401
FspBI	CTAG	2 cut(s)	506, 969
GlaI	GCGC	2 cut(s)	62, 527
GsaI	CCCAGC	2 cut(s)	241, 1008
HaeIII	GGCC	5 cut(s)	182, 297, 327, 1114, 1222
HapII	CCGG	7 cut(s)	324, 441, 480, 570, 656, 1092, 1316
HgaI	GACGC	1 cut(s)	461
HhaI	GCGC	2 cut(s)	63, 528
Hin1I	GRCGYC	5 cut(s)	264, 345, 453, 474, 666
Hin1II	CATG	5 cut(s)	562, 673, 940, 1250, 1441
Hin6I	GCGC	2 cut(s)	61, 526
HinP1I	GCGC	2 cut(s)	61, 526
HincII	GTYRAC	1 cut(s)	1470
HindII	GTYRAC	1 cut(s)	1470
HinfI	GANTC	5 cut(s)	83, 551, 617, 713, 1312
HpaII	CCGG	7 cut(s)	324, 441, 480, 570, 656, 1092, 1316
HphI	GGTGA	8 cut(s)	142, 196, 559, 652, 730, 796, 985, 1225
Hpy166II	GTNNAC	2 cut(s)	643, 1470
Hpy188I	TCNGA	6 cut(s)	292, 846, 1045, 1186, 1198, 1403
Hpy188III	TCNNGA	4 cut(s)	349, 956, 1316, 1353
Hpy8I	GTNNAC	2 cut(s)	643, 1470
Hpy99I	CGWCG	8 cut(s)	266, 269, 296, 347, 452, 455, 461, 479
HpyAV	CCTTC	7 cut(s)	112, 163, 292, 871, 1203, 1471, 1519
HpyCH4III	ACNGT	3 cut(s)	589, 784, 1433
HpyCH4IV	ACGT	7 cut(s)	26, 264, 345, 474, 522, 666, 1549
HpyCH4V	TGCA	2 cut(s)	1423, 1588
HpyF10VI	GCNNNNNNNGC	5 cut(s)	294, 375, 396, 1135, 1252
HpyF3I	CTNAG	3 cut(s)	818, 834, 1197
HpySE526I	ACGT	7 cut(s)	26, 264, 345, 474, 522, 666, 1549
Hsp92I	GRCGYC	5 cut(s)	264, 345, 453, 474, 666
Hsp92II	CATG	5 cut(s)	562, 673, 940, 1250, 1441
HspAI	GCGC	2 cut(s)	61, 526
Kpn2I	TCCGGA	1 cut(s)	1315
KroI	GCCGGC	1 cut(s)	479
KroNI	GCCGGC	1 cut(s)	481
Ksp22I	TGATCA	1 cut(s)	580
KspI	CCGCGG	1 cut(s)	705
Kzo9I	GATC	1 cut(s)	580
LguI	GCTCTTC	1 cut(s)	1010
LmnI	GCTCC	9 cut(s)	293, 383, 432, 632, 934, 1126, 1243, 1396, 1404
Lsp1109I	GCAGC	1 cut(s)	515
LweI	GCATC	1 cut(s)	1125
MaeI	CTAG	2 cut(s)	506, 969
MaeII	ACGT	7 cut(s)	26, 264, 345, 474, 522, 666, 1549
MaeIII	GTNAC	6 cut(s)	565, 631, 784, 869, 904, 1054
MalI	GATC	1 cut(s)	582
MbiI	CCGCTC	3 cut(s)	288, 378, 934
MboI	GATC	1 cut(s)	580
MhlI	GDGCHC	3 cut(s)	513, 629, 1401
MluCI	AATT	1 cut(s)	1381
MmeI	TCCRAC	2 cut(s)	315, 579
MreI	CGCCGGCG	1 cut(s)	479
MroI	TCCGGA	1 cut(s)	1315
MroNI	GCCGGC	1 cut(s)	479
MroXI	GAANNNNTTC	1 cut(s)	881
MslI	CAYNNNNRTG	1 cut(s)	941
MspA1I	CMGCKG	1 cut(s)	704
MspI	CCGG	7 cut(s)	324, 441, 480, 570, 656, 1092, 1316
MspR9I	CCNGG	3 cut(s)	88, 571, 1093
Mva1269I	GAATGC	2 cut(s)	1102, 1327
MvaI	CCWGG	1 cut(s)	88
MvnI	CGCG	2 cut(s)	61, 704
MwoI	GCNNNNNNNGC	5 cut(s)	294, 375, 396, 1135, 1252
NaeI	GCCGGC	1 cut(s)	481
NciI	CCSGG	2 cut(s)	571, 1093
NdeII	GATC	1 cut(s)	580
NgoMIV	GCCGGC	1 cut(s)	479
NlaIII	CATG	5 cut(s)	562, 673, 940, 1250, 1441
NlaIV	GGNNCC	7 cut(s)	9, 542, 923, 982, 1090, 1113, 1128
NmuCI	GTSAC	2 cut(s)	565, 784
NspI	RCATGY	1 cut(s)	562
PciI	ACATGT	1 cut(s)	558
PciSI	GCTCTTC	1 cut(s)	1010
PcsI	WCGNNNNNNNCGW	4 cut(s)	312, 456, 480, 788
PctI	GAATGC	2 cut(s)	1102, 1327
PdiI	GCCGGC	1 cut(s)	481
PdmI	GAANNNNTTC	1 cut(s)	881
PfeI	GAWTC	5 cut(s)	83, 551, 617, 713, 1312
PflFI	GACNNNGTC	2 cut(s)	266, 455
PflMI	CCANNNNNTGG	1 cut(s)	93
PfoI	TCCNGGA	1 cut(s)	1091
Ppu21I	YACGTR	1 cut(s)	523
PscI	ACATGT	1 cut(s)	558
Psp124BI	GAGCTC	2 cut(s)	629, 1401
Psp6I	CCWGG	1 cut(s)	86
PspFI	CCCAGC	2 cut(s)	237, 1004
PspGI	CCWGG	1 cut(s)	86
PspN4I	GGNNCC	7 cut(s)	9, 542, 923, 982, 1090, 1113, 1128
PspPI	GGNCC	2 cut(s)	540, 1112
PstNI	CAGNNNCTG	1 cut(s)	93
PsyI	GACNNNGTC	2 cut(s)	266, 455
RsaI	GTAC	4 cut(s)	92, 467, 1435, 1448
RsaNI	GTAC	4 cut(s)	91, 466, 1434, 1447
RseI	CAYNNNNRTG	1 cut(s)	941
SacI	GAGCTC	2 cut(s)	629, 1401
SacII	CCGCGG	1 cut(s)	705
SapI	GCTCTTC	1 cut(s)	1010
Sau3AI	GATC	1 cut(s)	580
Sau96I	GGNCC	2 cut(s)	540, 1112
ScaI	AGTACT	1 cut(s)	467
ScrFI	CCNGG	3 cut(s)	88, 571, 1093
SduI	GDGCHC	3 cut(s)	513, 629, 1401
SfaNI	GCATC	1 cut(s)	1125
SfcI	CTRYAG	1 cut(s)	1515
Sfr303I	CCGCGG	1 cut(s)	705
SgrAI	CRCCGGYG	1 cut(s)	479
SgrBI	CCGCGG	1 cut(s)	705
SinI	GGWCC	1 cut(s)	540
SmiMI	CAYNNNNRTG	1 cut(s)	941
Sse9I	AATT	1 cut(s)	1381
SspMI	CTAG	2 cut(s)	506, 969
SstI	GAGCTC	2 cut(s)	629, 1401
StyD4I	CCNGG	3 cut(s)	86, 569, 1091
StyI	CCWWGG	2 cut(s)	177, 1442
TaaI	ACNGT	3 cut(s)	589, 784, 1433
TaiI	ACGT	7 cut(s)	29, 267, 348, 477, 525, 669, 1552
TaqI	TCGA	6 cut(s)	342, 623, 791, 885, 986, 1557
TasI	AATT	1 cut(s)	1381
TatI	WGTACW	1 cut(s)	465
TfiI	GAWTC	5 cut(s)	83, 551, 617, 713, 1312
TscAI	CASTG	4 cut(s)	39, 592, 826, 1436
TseFI	GTSAC	2 cut(s)	565, 784
TseI	GCWGC	1 cut(s)	528
Tsp45I	GTSAC	2 cut(s)	565, 784
TspDTI	ATGAA	1 cut(s)	1160
TspGWI	ACGGA	3 cut(s)	619, 650, 1147
TspRI	CASTG	4 cut(s)	39, 592, 826, 1436
Tth111I	GACNNNGTC	2 cut(s)	266, 455
Van91I	CCANNNNNTGG	1 cut(s)	93
VpaK11BI	GGWCC	1 cut(s)	540
XapI	RAATTY	1 cut(s)	1381
XceI	RCATGY	1 cut(s)	562
XmnI	GAANNNNTTC	1 cut(s)	881
XspI	CTAG	2 cut(s)	506, 969
ZraI	GACGTC	4 cut(s)	265, 346, 475, 667
ZrmI	AGTACT	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.