Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0012137

Physical Location & Seq

Genomic Coordinates Reverse (-)

33358993 .. 33359895

Gene Structure 903 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG313800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGTTCTTGCCTTCCGGCGGGCTAATTGCGACGGCGGGAGGAGAGTCGGTGAAGATTTGGGATTTGATTGGAGGAGGGAAGTTGGTGTATTCAATGGAGAGCCATAACAAGACGGTGACTTCGATTTGTGTTGGGAAAGTTGGGAAGCTCAGTGGGGAAGAGGCTCAGCAGTACAGGATTTTGAGTGTTGCATTGGATGGTTACATGAAGGTTTTCGATTACGCGAAAATGAAGGTTACTCATTCAATGAGGTTCCCTGCGCCGCTCATGTCAGTGGGGTTTTCGCCGGATTGTATGACTAGGGTTATAGGAACTTCGAATGGGATAATATATGCTGGGAGGAGGAAAAACAAGGAAGATGTGGAGAGTGGTTCTGATGAGGAGCTTACCAAGTATGAAAGGAGGTTGAAGAAGTTGGGTTCCGGGAATGCTTTGGGTTTGGGGCCTGTGGCGGAGGAGCCACGGATTAGGGTCTTGAAGCCTACTAGTTTTCGGTATTTTCAGAGAGGGCAGTCAGAGAAGCCGTCTGAGAGAGATTATCTGGTGATGAGGCGGAAGAAAGTGAAGTTGGGGGAGCATGATAAGCTGTTGAAGAAGTTTAGGCATAAGGAAGCTCTGGTGTCTGTATTGGGGAGGACTAAGAATCCGGAGAATGCTGTGGCTGTGATGGAAGAATTGGTGTCGAGAAAGAAGTTGCTGAAATGTGTTTCGAATTTGGATTTGGAGGAGCTCGGAATGTTGCTGATGTTTTTGCAGAGGTACTCGACCATGCCAAGGTACTCGAGGTTGTTGATGGGTTTGACAGAGAAGGTTATTGAGATGAGGGCTGACGACATTAGAGCTTCTACAGAGTTGAATGGTCTTTTTAGAAACATTAAACGTGCTGTCGAGGAGGAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031461 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

UTP15_C WD40

Protein Analysis

300

Amino Acids

33.82

Weight (kDa)

9.64

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	4 - 117	8.9e-06	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	4 - 99	8.9e-06	WDR5 beta-propeller domain
UTP15_C	PF09384	173 - 300	2.2e-32	UTP15 C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47990
fragaria_vesca	FvH4_5g25500
malus_domestica	MD03G1274200.v1.1 MD11G1296600.v1.1
prunus_persica	Prupe.1G201800_v2.0.a1 Prupe.1G201800_v2.0.a1
pyrus_communis	pycom03g21860
rosa_chinensis	RchiOBHm_Chr7g0215731
rosa_laevigata	RLG00000002628 RLG00000002630
rosa_multiflora	Rmu_sc0000898.1_g000015
rosa_roxburghii	Rroxscaffold_3G00243890
rosa_rugosa	Rorug07G0156300
rosa_samantha	Rh7AG293400 Rh7BG285700 Rh7CG313600 Rh7CG313800 Rh7DG296700
rosa_wichuraiana	Rw7G024970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	265
AccII	CGCG	1 cut(s)	224
AccIII	TCCGGA	1 cut(s)	646
AciI	CCGC	5 cut(s)	18, 35, 263, 452, 553
AcsI	RAATTY	1 cut(s)	712
AfaI	GTAC	3 cut(s)	173, 761, 779
AfiI	CCNNNNNNNGG	2 cut(s)	17, 774
AgsI	TTSAA	6 cut(s)	93, 246, 409, 478, 592, 856
AhlI	ACTAGT	1 cut(s)	485
AjuI	GAANNNNNNNTTGG	4 cut(s)	551, 583, 704, 736
AluBI	AGCT	6 cut(s)	148, 385, 586, 614, 730, 842
AluI	AGCT	6 cut(s)	148, 385, 586, 614, 730, 842
Alw21I	GWGCWC	1 cut(s)	732
Ama87I	CYCGRG	1 cut(s)	781
Aor13HI	TCCGGA	1 cut(s)	646
AoxI	GGCC	1 cut(s)	443
ApoI	RAATTY	1 cut(s)	712
ArsI	GACNNNNNNTTYG	2 cut(s)	103, 135
Asp700I	GAANNNNTTC	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	262
AspS9I	GGNCC	1 cut(s)	443
AsuC2I	CCSGG	1 cut(s)	424
AsuHPI	GGTGA	3 cut(s)	61, 127, 556
AsuII	TTCGAA	2 cut(s)	317, 710
AvaI	CYCGRG	1 cut(s)	781
BanII	GRGCYC	1 cut(s)	732
Bbv12I	GWGCWC	1 cut(s)	732
BccI	CCATC	3 cut(s)	191, 661, 787
BceAI	ACGGC	2 cut(s)	48, 508
BcnI	CCSGG	1 cut(s)	424
BcuI	ACTAGT	1 cut(s)	485
BfaI	CTAG	2 cut(s)	300, 486
BfmI	CTRYAG	1 cut(s)	846
BisI	GCNGC	1 cut(s)	263
BlpI	GCTNAGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	264
Bme1390I	CCNGG	1 cut(s)	424
BmeT110I	CYCGRG	1 cut(s)	781
BmgT120I	GGNCC	1 cut(s)	443
BmiI	GGNNCC	4 cut(s)	254, 421, 444, 459
BmrFI	CCNGG	1 cut(s)	424
Bpu1102I	GCTNAGC	1 cut(s)	165
Bpu14I	TTCGAA	2 cut(s)	317, 710
BpuMI	CCSGG	1 cut(s)	424
BsaJI	CCNNGG	2 cut(s)	461, 773
BsaWI	WCCGGW	1 cut(s)	646
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 774
BseAI	TCCGGA	1 cut(s)	646
BseDI	CCNNGG	2 cut(s)	461, 773
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	2 cut(s)	17, 774
BseMII	CTCAG	3 cut(s)	163, 179, 519
BseRI	GAGGAG	6 cut(s)	54, 87, 355, 395, 470, 740
BseYI	CCCAGC	1 cut(s)	335
Bsh1236I	CGCG	1 cut(s)	224
BshFI	GGCC	1 cut(s)	445
BsiHKAI	GWGCWC	1 cut(s)	732
BsiHKCI	CYCGRG	1 cut(s)	781
BsiSI	CCGG	4 cut(s)	15, 287, 423, 647
BslI	CCNNNNNNNGG	2 cut(s)	17, 774
BsmI	GAATGC	2 cut(s)	433, 658
BsnI	GGCC	1 cut(s)	445
BsoBI	CYCGRG	1 cut(s)	781
Bsp119I	TTCGAA	2 cut(s)	317, 710
Bsp1286I	GDGCHC	1 cut(s)	732
Bsp13I	TCCGGA	1 cut(s)	646
Bsp1720I	GCTNAGC	1 cut(s)	165
BspACI	CCGC	5 cut(s)	18, 35, 263, 452, 553
BspANI	GGCC	1 cut(s)	445
BspCNI	CTCAG	3 cut(s)	162, 178, 520
BspEI	TCCGGA	1 cut(s)	646
BspFNI	CGCG	1 cut(s)	224
BspLI	GGNNCC	4 cut(s)	254, 421, 444, 459
BspT104I	TTCGAA	2 cut(s)	317, 710
BsrBI	CCGCTC	1 cut(s)	265
BssECI	CCNNGG	2 cut(s)	461, 773
BssT1I	CCWWGG	1 cut(s)	773
Bst4CI	ACNGT	1 cut(s)	115
Bst6I	CTCTTC	1 cut(s)	153
BstBI	TTCGAA	2 cut(s)	317, 710
BstC8I	GCNNGC	1 cut(s)	20
BstDEI	CTNAG	4 cut(s)	149, 165, 528, 639
BstDSI	CCRYGG	1 cut(s)	461
BstF5I	GGATG	1 cut(s)	202
BstFNI	CGCG	1 cut(s)	224
BstHHI	GCGC	1 cut(s)	262
BstMWI	GCNNNNNNNGC	1 cut(s)	583
BstSCI	CCNGG	1 cut(s)	422
BstSFI	CTRYAG	1 cut(s)	846
BstUI	CGCG	1 cut(s)	224
BsuRI	GGCC	1 cut(s)	445
BtgI	CCRYGG	1 cut(s)	461
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	2 cut(s)	157, 279
Cac8I	GCNNGC	1 cut(s)	20
CfoI	GCGC	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	443
Csp6I	GTAC	3 cut(s)	172, 760, 778
CviAII	CATG	4 cut(s)	205, 268, 578, 769
CviQI	GTAC	3 cut(s)	172, 760, 778
DdeI	CTNAG	4 cut(s)	149, 165, 528, 639
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
EciI	GGCGGA	2 cut(s)	467, 568
Ecl136II	GAGCTC	1 cut(s)	730
Eco130I	CCWWGG	1 cut(s)	773
Eco24I	GRGCYC	1 cut(s)	732
Eco53kI	GAGCTC	1 cut(s)	730
Eco88I	CYCGRG	1 cut(s)	781
EcoICRI	GAGCTC	1 cut(s)	730
EcoO109I	RGGNCCY	1 cut(s)	443
EcoT14I	CCWWGG	1 cut(s)	773
EcoT38I	GRGCYC	1 cut(s)	732
ErhI	CCWWGG	1 cut(s)	773
FaeI	CATG	4 cut(s)	208, 271, 581, 772
FatI	CATG	4 cut(s)	204, 267, 577, 768
FauI	CCCGC	2 cut(s)	11, 28
Fnu4HI	GCNGC	1 cut(s)	263
FokI	GGATG	1 cut(s)	209
FriOI	GRGCYC	1 cut(s)	732
Fsp4HI	GCNGC	1 cut(s)	263
FspBI	CTAG	2 cut(s)	300, 486
GlaI	GCGC	1 cut(s)	261
GluI	GCNGC	1 cut(s)	263
GsaI	CCCAGC	1 cut(s)	339
HaeIII	GGCC	1 cut(s)	445
HapII	CCGG	4 cut(s)	15, 287, 423, 647
HhaI	GCGC	1 cut(s)	262
Hin1II	CATG	4 cut(s)	208, 271, 581, 772
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HinfI	GANTC	2 cut(s)	44, 643
HpaII	CCGG	4 cut(s)	15, 287, 423, 647
HphI	GGTGA	3 cut(s)	61, 127, 556
Hpy188I	TCNGA	5 cut(s)	376, 504, 517, 529, 734
Hpy188III	TCNNGA	3 cut(s)	475, 647, 684
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	4 cut(s)	21, 202, 226, 802
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4IV	ACGT	1 cut(s)	880
HpyCH4V	TGCA	2 cut(s)	191, 754
HpyF10VI	GCNNNNNNNGC	1 cut(s)	583
HpyF3I	CTNAG	4 cut(s)	149, 165, 528, 639
HpySE526I	ACGT	1 cut(s)	880
Hsp92II	CATG	4 cut(s)	208, 271, 581, 772
HspAI	GCGC	1 cut(s)	260
Kpn2I	TCCGGA	1 cut(s)	646
LmnI	GCTCC	4 cut(s)	382, 457, 574, 727
MaeI	CTAG	2 cut(s)	300, 486
MaeII	ACGT	1 cut(s)	880
MaeIII	GTNAC	3 cut(s)	115, 200, 235
MbiI	CCGCTC	1 cut(s)	265
MboII	GAAGA	7 cut(s)	64, 170, 368, 421, 568, 604, 683
MhlI	GDGCHC	1 cut(s)	732
MluCI	AATT	3 cut(s)	24, 674, 712
MlyI	GAGTC	1 cut(s)	53
MroI	TCCGGA	1 cut(s)	646
MroXI	GAANNNNTTC	1 cut(s)	212
MseI	TTAA	1 cut(s)	876
MslI	CAYNNNNRTG	1 cut(s)	272
MspI	CCGG	4 cut(s)	15, 287, 423, 647
MspR9I	CCNGG	1 cut(s)	424
Mva1269I	GAATGC	2 cut(s)	433, 658
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	1 cut(s)	583
NciI	CCSGG	1 cut(s)	424
NlaIII	CATG	4 cut(s)	208, 271, 581, 772
NlaIV	GGNNCC	4 cut(s)	254, 421, 444, 459
NmuCI	GTSAC	1 cut(s)	115
NspV	TTCGAA	2 cut(s)	317, 710
PaeR7I	CTCGAG	1 cut(s)	781
PcsI	WCGNNNNNNNCGW	1 cut(s)	119
PctI	GAATGC	2 cut(s)	433, 658
PdmI	GAANNNNTTC	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	643
PfoI	TCCNGGA	1 cut(s)	422
PkrI	GCNGC	1 cut(s)	264
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
Psp124BI	GAGCTC	1 cut(s)	732
PspFI	CCCAGC	1 cut(s)	335
PspN4I	GGNNCC	4 cut(s)	254, 421, 444, 459
PspPI	GGNCC	1 cut(s)	443
PspXI	VCTCGAGB	1 cut(s)	781
RsaI	GTAC	3 cut(s)	173, 761, 779
RsaNI	GTAC	3 cut(s)	172, 760, 778
RseI	CAYNNNNRTG	1 cut(s)	272
SacI	GAGCTC	1 cut(s)	732
SaqAI	TTAA	1 cut(s)	876
SatI	GCNGC	1 cut(s)	263
Sau96I	GGNCC	1 cut(s)	443
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	424
SduI	GDGCHC	1 cut(s)	732
SfcI	CTRYAG	1 cut(s)	846
Sfr274I	CTCGAG	1 cut(s)	781
SfuI	TTCGAA	2 cut(s)	317, 710
SlaI	CTCGAG	1 cut(s)	781
SmiMI	CAYNNNNRTG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	781
SmoI	CTYRAG	1 cut(s)	781
SpeI	ACTAGT	1 cut(s)	485
Sse9I	AATT	3 cut(s)	24, 674, 712
SsiI	CCGC	5 cut(s)	18, 35, 263, 452, 553
SspMI	CTAG	2 cut(s)	300, 486
SstI	GAGCTC	1 cut(s)	732
StyD4I	CCNGG	1 cut(s)	422
StyI	CCWWGG	1 cut(s)	773
TaaI	ACNGT	1 cut(s)	115
TaiI	ACGT	1 cut(s)	883
TaqI	TCGA	8 cut(s)	122, 216, 317, 683, 710, 764, 782, 888
TasI	AATT	3 cut(s)	24, 674, 712
TatI	WGTACW	1 cut(s)	171
TauI	GCSGC	1 cut(s)	265
TfiI	GAWTC	1 cut(s)	643
Tru1I	TTAA	1 cut(s)	876
Tru9I	TTAA	1 cut(s)	876
TscAI	CASTG	2 cut(s)	157, 279
TseFI	GTSAC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	3 cut(s)	221, 245, 411
TspGWI	ACGGA	1 cut(s)	478
TspRI	CASTG	2 cut(s)	157, 279
XapI	RAATTY	1 cut(s)	712
XhoI	CTCGAG	1 cut(s)	781
XmnI	GAANNNNTTC	1 cut(s)	212
XspI	CTAG	2 cut(s)	300, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.