Rorug07G0156300

Pentatricopeptide repeat-containing protein At5g61990

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
12437838 .. 12439824
1987 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0156300.1

Sequence Viewer

Length: 912 bp
ATGGAGGACGCCTGCAAATCGGCGCTGAACTTCTTCTCCGATCAGCAGCTCTGCTACGCCGACATCCTCACCCCGCCGGAGGTTATAGCTCGAATCCAAGTCGCCGTCCTCAACTTCCTCCGAATCCTGACCTCGCCGGACCCCGCAATCTCCGACCTCCCTCTCGTCGCTAGAAGCTCAAGCAATAGTCGACTGAGCCGGGGCCTGGTGACTCAGACTTCATGGATTTTCCTGACGCGCTCGTTCTGCACCAGATCGCTTCTGCGGCCCAATGCCGCCAAAGCCTTTATCAGAGTGTGGAAGGTGATGGCAATGTGCTCTGAGATTTTGGGGCAAGGAAAGAGAGTCACGCAGCGGGAGCTCTTCTACAAGTTGCTTTGCGACTCGCCGGAGTATTTCTCGTCGCAATCGCAGGTCAATCGGACTATCCAAGATGTAGTGGCATTGCTTCGCTGCAGCCGTTACAGCCTCGGAATCATGGCCTCTAGCCGAGGACTTGTTGCCGGCCGTTTGCTGTTGCAGGAGCCAAACCAAGAGGTTGTGGACTGTGCTGCCTGTGGATTTTCCGGGCATGCTATCACTGGTGACTTGAATTCGATAGATAAGTTGATGATGAAAACAGATGCGCGGTACATCATTGTAGTTGAAAAGCATGCAATATACCAGCGGCTGGTTGAGGACCATGTGTTCAACCAAATTCCCAGCATTCTTATCACTGCCAAAGGGTACCCTGATATTGCCACAAGGCTGCTTCTTCATCGATTGAGCCGTGCATTTCCTGATTTGCCAATTTTAGCACTAGTTGACTGCTGGTTTAGCTATTTTATGCACTTTCAAGTTCGGAAGTATAGGGATGGGACTGGAAGCTTACAGATATGCTTGCAATGTCAAGTGGTTGGGAATGCGAGCTGA

Protein Analysis

303

Amino Acids

34.04

Weight (kDa)

8.98

Isoelectric Point (pI)

45.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TP6A_N PF04406 95 - 159 2.2e-17 Type IIB DNA topoisomerase
TOP6A-Spo11_Toprim PF21180 211 - 270 2e-17 Topoisomerase 6 subunit A/Spo11, Toprim domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 403
Acc65I GGTACC 1 cut(s) 726
AccB1I GGYRCC 1 cut(s) 726
AccB7I CCANNNNNTGG 1 cut(s) 670
AccI GTMKAC 1 cut(s) 190
AccII CGCG 2 cut(s) 238, 628
AciI CCGC 7 cut(s) 74, 144, 265, 276, 355, 628, 667
AcoI YGGCCR 1 cut(s) 505
AcsI RAATTY 2 cut(s) 592, 696
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 2 cut(s) 632, 728
AfiI CCNNNNNNNGG 3 cut(s) 79, 205, 670
AgsI TTSAA 4 cut(s) 592, 647, 691, 836
AhlI ACTAGT 1 cut(s) 799
AjnI CCWGG 1 cut(s) 204
AloI GAACNNNNNNTCC 4 cut(s) 20, 52, 671, 703
AluBI AGCT 7 cut(s) 49, 89, 177, 361, 819, 867, 909
AluI AGCT 7 cut(s) 49, 89, 177, 361, 819, 867, 909
Alw21I GWGCWC 2 cut(s) 320, 363
AlwNI CAGNNNCTG 1 cut(s) 670
AoxI GGCC 4 cut(s) 202, 266, 480, 505
ApeKI GCWGC 6 cut(s) 46, 352, 453, 456, 551, 748
ApoI RAATTY 2 cut(s) 592, 696
Asp700I GAANNNNTTC 1 cut(s) 32
Asp718I GGTACC 1 cut(s) 726
AspLEI GCGC 3 cut(s) 25, 240, 628
AspS9I GGNCC 4 cut(s) 139, 202, 267, 679
AsuC2I CCSGG 2 cut(s) 200, 568
AsuHPI GGTGA 4 cut(s) 61, 220, 316, 596
AvaII GGWCC 2 cut(s) 139, 679
BanI GGYRCC 1 cut(s) 726
BanII GRGCYC 1 cut(s) 363
Bbv12I GWGCWC 2 cut(s) 320, 363
BbvI GCAGC 6 cut(s) 58, 364, 440, 468, 538, 735
BccI CCATC 2 cut(s) 301, 848
BceAI ACGGC 4 cut(s) 89, 444, 492, 753
BcgI CGANNNNNNTGC 2 cut(s) 401, 435
BciT130I CCWGG 1 cut(s) 206
BcnI CCSGG 2 cut(s) 200, 568
BcuI ACTAGT 1 cut(s) 799
BfaI CTAG 3 cut(s) 171, 486, 800
BfmI CTRYAG 1 cut(s) 454
BfoI RGCGCY 1 cut(s) 26
BfuAI ACCTGC 1 cut(s) 403
BisI GCNGC 9 cut(s) 47, 266, 276, 353, 454, 457, 552, 668, 749
BlsI GCNGC 9 cut(s) 48, 267, 277, 354, 455, 458, 553, 669, 750
Bme1390I CCNGG 3 cut(s) 200, 206, 568
Bme18I GGWCC 2 cut(s) 139, 679
BmgT120I GGNCC 4 cut(s) 139, 202, 267, 679
BmiI GGNNCC 4 cut(s) 141, 203, 525, 728
BmrFI CCNGG 3 cut(s) 200, 206, 568
BmsI GCATC 1 cut(s) 613
BplI GAGNNNNNCTC 2 cut(s) 383, 415
BpuEI CTTGAG 1 cut(s) 163
BpuMI CCSGG 2 cut(s) 200, 568
Bsa29I ATCGAT 1 cut(s) 760
BsaHI GRCGYC 1 cut(s) 9
BsaJI CCNNGG 3 cut(s) 199, 469, 490
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 3 cut(s) 79, 205, 670
Bse118I RCCGGY 1 cut(s) 503
Bse1I ACTGG 2 cut(s) 586, 865
Bse3DI GCAATG 3 cut(s) 318, 443, 890
BseBI CCWGG 1 cut(s) 206
BseCI ATCGAT 1 cut(s) 760
BseDI CCNNGG 3 cut(s) 199, 469, 490
BseGI GGATG 2 cut(s) 63, 859
BseLI CCNNNNNNNGG 3 cut(s) 79, 205, 670
BseMI GCAATG 3 cut(s) 318, 443, 890
BseMII CTCAG 3 cut(s) 185, 227, 312
BseNI ACTGG 2 cut(s) 586, 865
BseX3I CGGCCG 1 cut(s) 505
BseXI GCAGC 6 cut(s) 58, 364, 440, 468, 538, 735
BseYI CCCAGC 1 cut(s) 701
BsgI GTGCAG 1 cut(s) 232
Bsh1236I CGCG 2 cut(s) 238, 628
Bsh1285I CGRYCG 1 cut(s) 508
BshFI GGCC 4 cut(s) 204, 268, 482, 507
BshNI GGYRCC 1 cut(s) 726
BshVI ATCGAT 1 cut(s) 760
BsiEI CGRYCG 1 cut(s) 508
BsiHKAI GWGCWC 2 cut(s) 320, 363
BsiSI CCGG 6 cut(s) 77, 137, 199, 389, 504, 567
BslFI GGGAC 1 cut(s) 871
BslI CCNNNNNNNGG 3 cut(s) 79, 205, 670
BsmFI GGGAC 1 cut(s) 871
BsmI GAATGC 2 cut(s) 705, 907
BsnI GGCC 4 cut(s) 204, 268, 482, 507
Bsp1286I GDGCHC 2 cut(s) 320, 363
Bsp143I GATC 2 cut(s) 40, 254
BspACI CCGC 7 cut(s) 74, 144, 265, 276, 355, 628, 667
BspANI GGCC 4 cut(s) 204, 268, 482, 507
BspCNI CTCAG 3 cut(s) 186, 226, 313
BspDI ATCGAT 1 cut(s) 760
BspFNI CGCG 2 cut(s) 238, 628
BspLI GGNNCC 4 cut(s) 141, 203, 525, 728
BspMAI CTGCAG 1 cut(s) 458
BspMI ACCTGC 1 cut(s) 403
BspQI GCTCTTC 1 cut(s) 368
BspT107I GGYRCC 1 cut(s) 726
BsrDI GCAATG 3 cut(s) 318, 443, 890
BsrFI RCCGGY 1 cut(s) 503
BsrI ACTGG 2 cut(s) 586, 865
BssAI RCCGGY 1 cut(s) 503
BssECI CCNNGG 3 cut(s) 199, 469, 490
BssMI GATC 2 cut(s) 40, 254
BssNI GRCGYC 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 1 cut(s) 548
Bst6I CTCTTC 1 cut(s) 368
BstACI GRCGYC 1 cut(s) 9
BstC8I GCNNGC 6 cut(s) 13, 505, 573, 654, 881, 907
BstDEI CTNAG 3 cut(s) 194, 213, 321
BstF5I GGATG 2 cut(s) 63, 859
BstFNI CGCG 2 cut(s) 238, 628
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 3 cut(s) 25, 240, 628
BstKTI GATC 2 cut(s) 43, 257
BstMBI GATC 2 cut(s) 40, 254
BstMCI CGRYCG 1 cut(s) 508
BstMWI GCNNNNNNNGC 6 cut(s) 246, 265, 281, 358, 465, 816
BstNI CCWGG 1 cut(s) 206
BstNSI RCATGY 2 cut(s) 575, 656
BstSCI CCNGG 3 cut(s) 198, 204, 566
BstSFI CTRYAG 1 cut(s) 454
BstUI CGCG 2 cut(s) 238, 628
BstV1I GCAGC 6 cut(s) 58, 364, 440, 468, 538, 735
BstZI CGGCCG 1 cut(s) 505
Bsu15I ATCGAT 1 cut(s) 760
BsuRI GGCC 4 cut(s) 204, 268, 482, 507
BsuTUI ATCGAT 1 cut(s) 760
BtsCI GGATG 2 cut(s) 63, 859
BtsI GCAGTG 1 cut(s) 714
BtsIMutI CAGTG 2 cut(s) 579, 714
BveI ACCTGC 1 cut(s) 403
Cac8I GCNNGC 6 cut(s) 13, 505, 573, 654, 881, 907
CaiI CAGNNNCTG 1 cut(s) 670
CfoI GCGC 3 cut(s) 25, 240, 628
Cfr10I RCCGGY 1 cut(s) 503
Cfr13I GGNCC 4 cut(s) 139, 202, 267, 679
ClaI ATCGAT 1 cut(s) 760
CseI GACGC 2 cut(s) 17, 244
Csp6I GTAC 2 cut(s) 631, 727
CviAII CATG 5 cut(s) 222, 478, 572, 653, 683
CviQI GTAC 2 cut(s) 631, 727
DdeI CTNAG 3 cut(s) 194, 213, 321
DpnI GATC 2 cut(s) 42, 256
DpnII GATC 2 cut(s) 40, 254
EaeI YGGCCR 1 cut(s) 505
EagI CGGCCG 1 cut(s) 505
Eam1104I CTCTTC 1 cut(s) 368
EarI CTCTTC 1 cut(s) 368
Ecl136II GAGCTC 1 cut(s) 361
EclXI CGGCCG 1 cut(s) 505
Eco24I GRGCYC 1 cut(s) 363
Eco47I GGWCC 2 cut(s) 139, 679
Eco52I CGGCCG 1 cut(s) 505
Eco53kI GAGCTC 1 cut(s) 361
EcoICRI GAGCTC 1 cut(s) 361
EcoO109I RGGNCCY 1 cut(s) 202
EcoRI GAATTC 1 cut(s) 592
EcoRII CCWGG 1 cut(s) 204
EcoT38I GRGCYC 1 cut(s) 363
FaeI CATG 5 cut(s) 225, 481, 575, 656, 686
FaqI GGGAC 1 cut(s) 871
FatI CATG 5 cut(s) 221, 477, 571, 652, 682
FauI CCCGC 3 cut(s) 81, 151, 348
FblI GTMKAC 1 cut(s) 190
Fnu4HI GCNGC 9 cut(s) 47, 266, 276, 353, 454, 457, 552, 668, 749
FokI GGATG 2 cut(s) 50, 866
FriOI GRGCYC 1 cut(s) 363
Fsp4HI GCNGC 9 cut(s) 47, 266, 276, 353, 454, 457, 552, 668, 749
FspBI CTAG 3 cut(s) 171, 486, 800
GlaI GCGC 3 cut(s) 24, 239, 627
GluI GCNGC 9 cut(s) 47, 266, 276, 353, 454, 457, 552, 668, 749
GsaI CCCAGC 1 cut(s) 705
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 4 cut(s) 204, 268, 482, 507
HapII CCGG 6 cut(s) 77, 137, 199, 389, 504, 567
HgaI GACGC 2 cut(s) 17, 244
HhaI GCGC 3 cut(s) 25, 240, 628
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 5 cut(s) 225, 481, 575, 656, 686
Hin6I GCGC 3 cut(s) 23, 238, 626
HinP1I GCGC 3 cut(s) 23, 238, 626
HincII GTYRAC 2 cut(s) 191, 805
HindII GTYRAC 2 cut(s) 191, 805
HindIII AAGCTT 1 cut(s) 865
HinfI GANTC 6 cut(s) 93, 123, 211, 345, 383, 474
HpaII CCGG 6 cut(s) 77, 137, 199, 389, 504, 567
HphI GGTGA 4 cut(s) 61, 220, 316, 596
Hpy166II GTNNAC 3 cut(s) 191, 544, 805
Hpy188I TCNGA 9 cut(s) 40, 122, 154, 216, 293, 322, 423, 473, 843
Hpy188III TCNNGA 3 cut(s) 127, 232, 779
Hpy8I GTNNAC 3 cut(s) 191, 544, 805
Hpy99I CGWCG 2 cut(s) 170, 406
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 1 cut(s) 548
HpyCH4V TGCA 8 cut(s) 15, 249, 456, 520, 656, 773, 829, 883
HpyF10VI GCNNNNNNNGC 6 cut(s) 246, 265, 281, 358, 465, 816
HpyF3I CTNAG 3 cut(s) 194, 213, 321
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 5 cut(s) 225, 481, 575, 656, 686
HspAI GCGC 3 cut(s) 23, 238, 626
KpnI GGTACC 1 cut(s) 730
KroI GCCGGC 1 cut(s) 503
KroNI GCCGGC 1 cut(s) 505
Kzo9I GATC 2 cut(s) 40, 254
LguI GCTCTTC 1 cut(s) 368
LmnI GCTCC 2 cut(s) 358, 523
Lsp1109I GCAGC 6 cut(s) 58, 364, 440, 468, 538, 735
LweI GCATC 1 cut(s) 613
MaeI CTAG 3 cut(s) 171, 486, 800
MaeIII GTNAC 4 cut(s) 208, 346, 461, 584
MalI GATC 2 cut(s) 42, 256
MboI GATC 2 cut(s) 40, 254
MboII GAAGA 3 cut(s) 25, 355, 746
MhlI GDGCHC 2 cut(s) 320, 363
MluCI AATT 3 cut(s) 592, 696, 789
MlyI GAGTC 3 cut(s) 205, 354, 377
MmeI TCCRAC 1 cut(s) 177
MroNI GCCGGC 1 cut(s) 503
MroXI GAANNNNTTC 1 cut(s) 32
MspA1I CMGCKG 2 cut(s) 355, 667
MspI CCGG 6 cut(s) 77, 137, 199, 389, 504, 567
MspR9I CCNGG 3 cut(s) 200, 206, 568
Mva1269I GAATGC 2 cut(s) 705, 907
MvaI CCWGG 1 cut(s) 206
MvnI CGCG 2 cut(s) 238, 628
MwoI GCNNNNNNNGC 6 cut(s) 246, 265, 281, 358, 465, 816
NaeI GCCGGC 1 cut(s) 505
NciI CCSGG 2 cut(s) 200, 568
NdeII GATC 2 cut(s) 40, 254
NgoMIV GCCGGC 1 cut(s) 503
NlaIII CATG 5 cut(s) 225, 481, 575, 656, 686
NlaIV GGNNCC 4 cut(s) 141, 203, 525, 728
NmeAIII GCCGAG 1 cut(s) 515
NmuCI GTSAC 3 cut(s) 208, 346, 584
NspI RCATGY 2 cut(s) 575, 656
PaeI GCATGC 2 cut(s) 575, 656
PciSI GCTCTTC 1 cut(s) 368
PcsI WCGNNNNNNNCGW 2 cut(s) 457, 766
PctI GAATGC 2 cut(s) 705, 907
PdiI GCCGGC 1 cut(s) 505
PdmI GAANNNNTTC 1 cut(s) 32
PfeI GAWTC 3 cut(s) 93, 123, 474
PflMI CCANNNNNTGG 1 cut(s) 670
PkrI GCNGC 9 cut(s) 48, 267, 277, 354, 455, 458, 553, 669, 750
PleI GAGTC 3 cut(s) 205, 353, 377
PpsI GAGTC 3 cut(s) 205, 353, 377
Psp124BI GAGCTC 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 204
PspFI CCCAGC 1 cut(s) 701
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 4 cut(s) 141, 203, 525, 728
PspPI GGNCC 4 cut(s) 139, 202, 267, 679
PstI CTGCAG 1 cut(s) 458
PstNI CAGNNNCTG 1 cut(s) 670
RsaI GTAC 2 cut(s) 632, 728
RsaNI GTAC 2 cut(s) 631, 727
SacI GAGCTC 1 cut(s) 363
SalI GTCGAC 1 cut(s) 189
SapI GCTCTTC 1 cut(s) 368
SatI GCNGC 9 cut(s) 47, 266, 276, 353, 454, 457, 552, 668, 749
Sau3AI GATC 2 cut(s) 40, 254
Sau96I GGNCC 4 cut(s) 139, 202, 267, 679
SchI GAGTC 3 cut(s) 205, 354, 377
ScrFI CCNGG 3 cut(s) 200, 206, 568
SduI GDGCHC 2 cut(s) 320, 363
SfaNI GCATC 1 cut(s) 613
SfcI CTRYAG 1 cut(s) 454
SinI GGWCC 2 cut(s) 139, 679
SmlI CTYRAG 1 cut(s) 178
SmoI CTYRAG 1 cut(s) 178
SpeI ACTAGT 1 cut(s) 799
SphI GCATGC 2 cut(s) 575, 656
Sse9I AATT 3 cut(s) 592, 696, 789
SsiI CCGC 7 cut(s) 74, 144, 265, 276, 355, 628, 667
SspMI CTAG 3 cut(s) 171, 486, 800
SstI GAGCTC 1 cut(s) 363
StyD4I CCNGG 3 cut(s) 198, 204, 566
TaaI ACNGT 1 cut(s) 548
TaqI TCGA 4 cut(s) 91, 190, 596, 760
TasI AATT 3 cut(s) 592, 696, 789
TauI GCSGC 3 cut(s) 268, 278, 670
TfiI GAWTC 3 cut(s) 93, 123, 474
TscAI CASTG 2 cut(s) 586, 721
TseFI GTSAC 3 cut(s) 208, 346, 584
TseI GCWGC 6 cut(s) 46, 352, 453, 456, 551, 748
Tsp45I GTSAC 3 cut(s) 208, 346, 584
TspDTI ATGAA 3 cut(s) 210, 629, 746
TspRI CASTG 2 cut(s) 586, 721
Van91I CCANNNNNTGG 1 cut(s) 670
VpaK11BI GGWCC 2 cut(s) 139, 679
XapI RAATTY 2 cut(s) 592, 696
XceI RCATGY 2 cut(s) 575, 656
XmiI GTMKAC 1 cut(s) 190
XmnI GAANNNNTTC 1 cut(s) 32
XspI CTAG 3 cut(s) 171, 486, 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.