Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034361.1

Orthogroup ID

OG0001276

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 664

Gene Structure 663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034361.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atgttagaggctaagattgagccggatttttacacttacagcaatgtgatcaacgcacattgtaagtttggggatgttaggcagggtaagaggctactgtttgagatggtacagaagggctgtaatccgaatttgagtaccttcaatgtggtgattgatggattgtgtacaagtagggctgtcgatgaagccattgagttgaaaaaatcaatggttgagacgggattgacccctgataggtatacttattcaatactagttgatggattgtgcagacagaagagatcagaagaagcaaagatggtattgaacgagatgtatgatataggtttgaatcctgaccgcaccttgtacattgctttgattgatggattcttgaaagaaagtaacgtggataaggccctgaggatcaaagaagagatggtcgctcgaggagttaagttgtgcagtgtcacatataatgtgatttttgcagggatctgtaaaataggtaagatgaagaaggcagaatctcttttgaatgagatgaatgctatgggaattgaacctaatacccagacatataactatttaattgatgggtactgtcgggagcaaaatgtaaacaagggttatgcattacttaatgagatgaagcaaaggaacttgacacccaatgaggtc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230

Pfam Domains

Protein Families

Mem_trans PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

221

Amino Acids

25.09

Weight (kDa)

6.62

Isoelectric Point (pI)

32.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61990
fragaria_vesca	FvH4_5g09340 FvH4_5g09340 FvH4_5g09340 FvH4_5g09340
malus_domestica	MD06G1131900.v1.1 MD14G1148300.v1.1
prunus_persica	Prupe.5G142900_v2.0.a1 Prupe.5G142900_v2.0.a1
pyrus_communis	pycom06g12350 pycom14g12300
rosa_chinensis	RchiOBHm_Chr1g0325241 RchiOBHm_Chr1g0325261 RchiOBHm_Chr2g0162681 RchiOBHm_Chr7g0188811 RchiOBHm_Chr7g0229441
rosa_laevigata	RLG00000004657 RLG00000028121 RLG00000028122 RLG00000031426 RLG00000035825
rosa_multiflora	Rmu_sc0001621.1_g000013 Rmu_sc0001918.1_g000006 Rmu_sc0004279.1_g000018 Rmu_sc0034360.1_g000001 Rmu_sc0034361.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266000 Rroxscaffold_5G00381140
rosa_rugosa	Rorug02G0360500 Rorug05G0369000 Rorug06G0494100 Rorug07G0156300
rosa_samantha	Rh1BG033100 Rh2CG348200 Rh2CG348300 Rh4AG001800 Rh4AG163800 Rh4BG001600 Rh4BG400000 Rh4BG400100 Rh4CG415000 Rh4CG415100 Rh6DG332400 Rh6DG332500 Rh7AG098900 Rh7AG408500 Rh7BG100600 Rh7CG102100 Rh7CG477400 Rh7DG100700 Rh7DG406300 Rh7DG406400 Rh7DG446700
rosa_wichuraiana	Rw0G022150 Rw7G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	242
AciI	CCGC	1 cut(s)	343
AclWI	GGATC	2 cut(s)	416, 485
AcsI	RAATTY	1 cut(s)	130
AfaI	GTAC	5 cut(s)	111, 139, 169, 353, 584
AfiI	CCNNNNNNNGG	1 cut(s)	237
AgsI	TTSAA	8 cut(s)	145, 202, 252, 310, 334, 379, 520, 545
AhlI	ACTAGT	1 cut(s)	256
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	2 cut(s)	416, 485
Ama87I	CYCGRG	1 cut(s)	429
AoxI	GGCC	1 cut(s)	399
ApoI	RAATTY	1 cut(s)	130
AspS9I	GGNCC	1 cut(s)	400
AsuHPI	GGTGA	1 cut(s)	163
AvaI	CYCGRG	1 cut(s)	429
AxyI	CCTNAGG	1 cut(s)	404
BccI	CCATC	7 cut(s)	100, 152, 257, 295, 362, 415, 572
BclI	TGATCA	1 cut(s)	48
BcoDI	GTCTC	1 cut(s)	212
BcuI	ACTAGT	1 cut(s)	256
BfaI	CTAG	1 cut(s)	257
BmeT110I	CYCGRG	1 cut(s)	429
BmgT120I	GGNCC	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse21I	CCTNAGG	1 cut(s)	404
Bse3DI	GCAATG	2 cut(s)	49, 354
BseGI	GGATG	1 cut(s)	79
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMI	GCAATG	2 cut(s)	49, 354
BseMII	CTCAG	1 cut(s)	395
BseRI	GAGGAG	1 cut(s)	447
BsgI	GTGCAG	2 cut(s)	292, 466
BshFI	GGCC	1 cut(s)	401
BsiHKCI	CYCGRG	1 cut(s)	429
BsiSI	CCGG	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmAI	GTCTC	1 cut(s)	212
BsmBI	CGTCTC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	535
BsnI	GGCC	1 cut(s)	401
BsoBI	CYCGRG	1 cut(s)	429
Bsp1407I	TGTACA	2 cut(s)	167, 351
Bsp143I	GATC	4 cut(s)	48, 284, 408, 477
BspACI	CCGC	1 cut(s)	343
BspANI	GGCC	1 cut(s)	401
BspCNI	CTCAG	1 cut(s)	396
BspPI	GGATC	2 cut(s)	416, 485
BsrDI	GCAATG	2 cut(s)	49, 354
BsrGI	TGTACA	2 cut(s)	167, 351
BssMI	GATC	4 cut(s)	48, 284, 408, 477
BssNAI	GTATAC	1 cut(s)	243
Bst1107I	GTATAC	1 cut(s)	243
Bst4CI	ACNGT	2 cut(s)	99, 587
Bst6I	CTCTTC	2 cut(s)	275, 411
BstAUI	TGTACA	2 cut(s)	167, 351
BstDEI	CTNAG	2 cut(s)	12, 404
BstF5I	GGATG	1 cut(s)	79
BstKTI	GATC	4 cut(s)	51, 287, 411, 480
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	4 cut(s)	48, 284, 408, 477
BstX2I	RGATCY	1 cut(s)	477
BstYI	RGATCY	1 cut(s)	477
BstZ17I	GTATAC	1 cut(s)	243
Bsu36I	CCTNAGG	1 cut(s)	404
BsuRI	GGCC	1 cut(s)	401
BtsCI	GGATG	1 cut(s)	79
BtsI	GCAGTG	1 cut(s)	454
BtsIMutI	CAGTG	1 cut(s)	454
Cfr13I	GGNCC	1 cut(s)	400
Csp6I	GTAC	5 cut(s)	110, 138, 168, 352, 583
CviJI	RGCY	7 cut(s)	11, 22, 94, 120, 179, 191, 401
CviKI_1	RGCY	7 cut(s)	11, 22, 94, 120, 179, 191, 401
CviQI	GTAC	5 cut(s)	110, 138, 168, 352, 583
DdeI	CTNAG	2 cut(s)	12, 404
DpnI	GATC	4 cut(s)	50, 286, 410, 479
DpnII	GATC	4 cut(s)	48, 284, 408, 477
Eam1104I	CTCTTC	2 cut(s)	275, 411
EarI	CTCTTC	2 cut(s)	275, 411
Eco81I	CCTNAGG	1 cut(s)	404
Eco88I	CYCGRG	1 cut(s)	429
EcoO109I	RGGNCCY	1 cut(s)	400
EcoT22I	ATGCAT	1 cut(s)	619
Esp3I	CGTCTC	1 cut(s)	212
FaiI	YATR	9 cut(s)	243, 321, 326, 457, 459, 536, 562, 564, 615
FbaI	TGATCA	1 cut(s)	48
FblI	GTMKAC	1 cut(s)	242
FokI	GGATG	1 cut(s)	86
FspBI	CTAG	1 cut(s)	257
HaeIII	GGCC	1 cut(s)	401
HapII	CCGG	1 cut(s)	23
HinfI	GANTC	3 cut(s)	334, 372, 509
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	3 cut(s)	168, 243, 604
Hpy188I	TCNGA	2 cut(s)	129, 289
Hpy188III	TCNNGA	3 cut(s)	338, 376, 590
Hpy8I	GTNNAC	3 cut(s)	168, 243, 604
HpyAV	CCTTC	3 cut(s)	109, 151, 496
HpyCH4III	ACNGT	2 cut(s)	99, 587
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	4 cut(s)	273, 447, 473, 617
HpyF3I	CTNAG	2 cut(s)	12, 404
HpySE526I	ACGT	1 cut(s)	390
Ksp22I	TGATCA	1 cut(s)	48
Kzo9I	GATC	4 cut(s)	48, 284, 408, 477
LmnI	GCTCC	1 cut(s)	592
LpnPI	CCDG	7 cut(s)	36, 68, 246, 351, 416, 459, 569
MaeI	CTAG	1 cut(s)	257
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	2 cut(s)	386, 451
MalI	GATC	4 cut(s)	50, 286, 410, 479
MboI	GATC	4 cut(s)	48, 284, 408, 477
MboII	GAAGA	4 cut(s)	292, 302, 428, 511
MflI	RGATCY	1 cut(s)	477
MluCI	AATT	3 cut(s)	130, 540, 573
MnlI	CCTC	4 cut(s)	84, 399, 425, 652
Mph1103I	ATGCAT	1 cut(s)	619
MseI	TTAA	3 cut(s)	438, 572, 624
MspI	CCGG	1 cut(s)	23
Mva1269I	GAATGC	1 cut(s)	535
NdeII	GATC	4 cut(s)	48, 284, 408, 477
NmuCI	GTSAC	1 cut(s)	451
NsiI	ATGCAT	1 cut(s)	619
PaeR7I	CTCGAG	1 cut(s)	429
PctI	GAATGC	1 cut(s)	535
PfeI	GAWTC	3 cut(s)	334, 372, 509
PspPI	GGNCC	1 cut(s)	400
PspXI	VCTCGAGB	1 cut(s)	429
PsuI	RGATCY	1 cut(s)	477
RsaI	GTAC	5 cut(s)	111, 139, 169, 353, 584
RsaNI	GTAC	5 cut(s)	110, 138, 168, 352, 583
SaqAI	TTAA	3 cut(s)	438, 572, 624
Sau3AI	GATC	4 cut(s)	48, 284, 408, 477
Sau96I	GGNCC	1 cut(s)	400
SetI	ASST	8 cut(s)	143, 242, 331, 350, 393, 493, 550, 663
Sfr274I	CTCGAG	1 cut(s)	429
SlaI	CTCGAG	1 cut(s)	429
SmlI	CTYRAG	1 cut(s)	429
SmoI	CTYRAG	1 cut(s)	429
SpeI	ACTAGT	1 cut(s)	256
Sse9I	AATT	3 cut(s)	130, 540, 573
SsiI	CCGC	1 cut(s)	343
SspMI	CTAG	1 cut(s)	257
TaaI	ACNGT	2 cut(s)	99, 587
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	2 cut(s)	183, 430
TasI	AATT	3 cut(s)	130, 540, 573
TatI	WGTACW	2 cut(s)	167, 351
TfiI	GAWTC	3 cut(s)	334, 372, 509
Tru1I	TTAA	3 cut(s)	438, 572, 624
Tru9I	TTAA	3 cut(s)	438, 572, 624
TscAI	CASTG	1 cut(s)	454
TseFI	GTSAC	1 cut(s)	451
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	4 cut(s)	201, 512, 542, 647
TspRI	CASTG	1 cut(s)	454
XapI	RAATTY	1 cut(s)	130
XhoI	CTCGAG	1 cut(s)	429
XmiI	GTMKAC	1 cut(s)	242
XspI	CTAG	1 cut(s)	257
Zsp2I	ATGCAT	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.