Rmu_sc0004279.1_g000018

Pentatricopeptide repeat-containing protein At5g61990

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004279.1
Physical Location & Seq
Reverse (-)
79635 .. 81322
1688 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004279.1_g000018.1.cds

Sequence Viewer

Length: 1218 bp
atgggtttagcttcacatgggagaaaccttgcatttcagattggtaatccaaaatcaaggcttttgattcgggtccactactactgcagttataaatcagagagtaaaaagcaagaggatgatgaaacagtgagggaaatctgtaccattctgaagcgaagcagagagtgggagtccgtgttgagctcatcagggtttcccaagaagctaaacccttgtgtggttctatccgttcttcaacaacaccaccaggttggtgacccagaaagacttttaagtttctttgattggtctggtgcccaattgggtgtgctcccaaatttgcattctttttcgattatggctgttgttttgtgtaattccaagctttttgggcatgcccatggtgtgttggagagaatggttaggacccggaagccggctttagaagttttggattgtgttgttaggagtgttgggatttcgccgagattggaatgctgtaattctctgttgaatgagttgttgaagcgtaataggatgaggctgttctggaaagtgtatgatgggatgttagaggctaagatttacacttatagcaatgtgatcaatgcacattgtaagtttggggatgttaggcagggtaagaggctactgtttgagatggtagagaagggctgtaatccgaatttgagtaccttcaatgtggtgattgatggattgtgtagaagtagggctgttgatgaagccattgagttgaaaaaatcgatggttgagaagggattgacacctgataggtaccatattcctcgtacttgggtacaagatggagagaaccttctagttctccatgaagagcttgggggtgacccttcaaaaatttctgtgaggacacgaactggccaagagatatgtgcgtatgtatcagacactgatcctccgcctgccagttcttggaaaccaaactctgaattcatgtcccaaaatcctgaagttcaactgacctgtgaacatggatggcacattacttcaattaactttgctagctatggaactcctatcagaagctgtggcgccactttcactctgggaacttgcaatgctgatgtcttaacaatcgttgagcaggcttgccttggcaaagaaggatgttcgattaccatctccacagaaaccttaggtgatccttgtccaggtgtattaaatagtttagctgttcaagctctttgcagcaattga

Protein Analysis

405

Amino Acids

45.15

Weight (kDa)

7.82

Isoelectric Point (pI)

37.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 93
Acc65I GGTACC 1 cut(s) 777
AccB1I GGYRCC 3 cut(s) 296, 777, 1052
AccB7I CCANNNNNTGG 1 cut(s) 933
AciI CCGC 1 cut(s) 920
AclWI GGATC 2 cut(s) 908, 1157
AcoI YGGCCR 1 cut(s) 880
AcsI RAATTY 4 cut(s) 319, 667, 858, 950
AcuI CTGAAG 2 cut(s) 173, 990
AcyI GRCGYC 1 cut(s) 1053
AfaI GTAC 5 cut(s) 145, 676, 779, 793, 801
AfiI CCNNNNNNNGG 4 cut(s) 220, 418, 933, 1172
AgsI TTSAA 9 cut(s) 239, 496, 508, 682, 739, 855, 977, 1011, 1199
AjnI CCWGG 2 cut(s) 249, 1171
AjuI GAANNNNNNNTTGG 2 cut(s) 310, 342
AluBI AGCT 9 cut(s) 11, 186, 208, 367, 838, 1026, 1047, 1193, 1202
AluI AGCT 9 cut(s) 11, 186, 208, 367, 838, 1026, 1047, 1193, 1202
Alw21I GWGCWC 2 cut(s) 188, 315
AlwI GGATC 2 cut(s) 908, 1157
AlwNI CAGNNNCTG 2 cut(s) 911, 1047
AoxI GGCC 1 cut(s) 880
ApeKI GCWGC 1 cut(s) 1209
ApoI RAATTY 4 cut(s) 319, 667, 858, 950
Asp718I GGTACC 1 cut(s) 777
AspLEI GCGC 1 cut(s) 1055
AspS9I GGNCC 2 cut(s) 73, 408
AsuC2I CCSGG 1 cut(s) 412
AsuHPI GGTGA 4 cut(s) 269, 700, 857, 1172
AsuNHI GCTAGC 1 cut(s) 1022
AvaII GGWCC 2 cut(s) 73, 408
AxyI CCTNAGG 1 cut(s) 1156
BaeGI GKGCMC 1 cut(s) 301
BalI TGGCCA 1 cut(s) 882
BanI GGYRCC 3 cut(s) 296, 777, 1052
BanII GRGCYC 1 cut(s) 188
Bbv12I GWGCWC 2 cut(s) 188, 315
BccI CCATC 7 cut(s) 539, 637, 689, 742, 800, 990, 1148
BciT130I CCWGG 2 cut(s) 251, 1173
BclI TGATCA 1 cut(s) 585
BcnI CCSGG 1 cut(s) 412
BfaI CTAG 2 cut(s) 821, 1023
BfmI CTRYAG 1 cut(s) 85
BfoI RGCGCY 1 cut(s) 1056
BisI GCNGC 1 cut(s) 1210
BlsI GCNGC 1 cut(s) 1211
Bme1390I CCNGG 3 cut(s) 251, 412, 1173
Bme18I GGWCC 2 cut(s) 73, 408
BmgT120I GGNCC 2 cut(s) 73, 408
BmiI GGNNCC 5 cut(s) 74, 298, 410, 779, 1054
BmrFI CCNGG 3 cut(s) 251, 412, 1173
BmtI GCTAGC 1 cut(s) 1026
BpuMI CCSGG 1 cut(s) 412
Bsa29I ATCGAT 1 cut(s) 746
BsaBI GATNNNNATC 1 cut(s) 1139
BsaHI GRCGYC 1 cut(s) 1053
BsaJI CCNNGG 2 cut(s) 382, 1114
BsaXI ACNNNNNCTCC 4 cut(s) 164, 194, 901, 931
Bsc4I CCNNNNNNNGG 4 cut(s) 220, 418, 933, 1172
Bse118I RCCGGY 1 cut(s) 418
Bse1I ACTGG 2 cut(s) 883, 927
Bse21I CCTNAGG 1 cut(s) 1156
Bse3DI GCAATG 2 cut(s) 586, 1084
Bse8I GATNNNNATC 1 cut(s) 1139
BseBI CCWGG 2 cut(s) 251, 1173
BseCI ATCGAT 1 cut(s) 746
BseDI CCNNGG 2 cut(s) 382, 1114
BseGI GGATG 6 cut(s) 124, 525, 555, 616, 1001, 1133
BseJI GATNNNNATC 1 cut(s) 1139
BseLI CCNNNNNNNGG 4 cut(s) 220, 418, 933, 1172
BseMI GCAATG 2 cut(s) 586, 1084
BseNI ACTGG 2 cut(s) 883, 927
BseSI GKGCMC 1 cut(s) 301
BshFI GGCC 1 cut(s) 882
BshNI GGYRCC 3 cut(s) 296, 777, 1052
BshVI ATCGAT 1 cut(s) 746
BsiHKAI GWGCWC 2 cut(s) 188, 315
BsiSI CCGG 2 cut(s) 412, 419
BslFI GGGAC 1 cut(s) 943
BslI CCNNNNNNNGG 4 cut(s) 220, 418, 933, 1172
BsmFI GGGAC 1 cut(s) 943
BsmI GAATGC 2 cut(s) 325, 482
BsnI GGCC 1 cut(s) 882
Bsp1286I GDGCHC 3 cut(s) 188, 301, 315
Bsp143I GATC 3 cut(s) 585, 913, 1162
Bsp19I CCATGG 1 cut(s) 382
BspACI CCGC 1 cut(s) 920
BspANI GGCC 1 cut(s) 882
BspDI ATCGAT 1 cut(s) 746
BspLI GGNNCC 5 cut(s) 74, 298, 410, 779, 1054
BspMAI CTGCAG 1 cut(s) 89
BspOI GCTAGC 1 cut(s) 1026
BspPI GGATC 2 cut(s) 908, 1157
BspQI GCTCTTC 1 cut(s) 828
BspT107I GGYRCC 3 cut(s) 296, 777, 1052
BsrDI GCAATG 2 cut(s) 586, 1084
BsrFI RCCGGY 1 cut(s) 418
BsrI ACTGG 2 cut(s) 883, 927
BssAI RCCGGY 1 cut(s) 418
BssECI CCNNGG 2 cut(s) 382, 1114
BssMI GATC 3 cut(s) 585, 913, 1162
BssNI GRCGYC 1 cut(s) 1053
BssT1I CCWWGG 2 cut(s) 382, 1114
Bst2UI CCWGG 2 cut(s) 251, 1173
Bst4CI ACNGT 2 cut(s) 130, 636
Bst6I CTCTTC 1 cut(s) 828
BstACI GRCGYC 1 cut(s) 1053
BstC8I GCNNGC 6 cut(s) 378, 420, 924, 1024, 1107, 1111
BstDEI CTNAG 2 cut(s) 561, 1156
BstDSI CCRYGG 1 cut(s) 382
BstEII GGTNACC 2 cut(s) 257, 845
BstENI CCTNNNNNAGG 1 cut(s) 1170
BstF5I GGATG 6 cut(s) 124, 525, 555, 616, 1001, 1133
BstH2I RGCGCY 1 cut(s) 1056
BstHHI GCGC 1 cut(s) 1055
BstKTI GATC 3 cut(s) 588, 916, 1165
BstMBI GATC 3 cut(s) 585, 913, 1162
BstMWI GCNNNNNNNGC 2 cut(s) 373, 1199
BstNI CCWGG 2 cut(s) 251, 1173
BstNSI RCATGY 1 cut(s) 380
BstPI GGTNACC 2 cut(s) 257, 845
BstSCI CCNGG 3 cut(s) 249, 410, 1171
BstSFI CTRYAG 1 cut(s) 85
BstSLI GKGCMC 1 cut(s) 301
BstXI CCANNNNNNTGG 1 cut(s) 254
Bsu15I ATCGAT 1 cut(s) 746
Bsu36I CCTNAGG 1 cut(s) 1156
BsuRI GGCC 1 cut(s) 882
BsuTUI ATCGAT 1 cut(s) 746
BtgI CCRYGG 1 cut(s) 382
BtsCI GGATG 6 cut(s) 124, 525, 555, 616, 1001, 1133
BtsIMutI CAGTG 2 cut(s) 135, 909
Cac8I GCNNGC 6 cut(s) 378, 420, 924, 1024, 1107, 1111
CaiI CAGNNNCTG 2 cut(s) 911, 1047
CfoI GCGC 1 cut(s) 1055
Cfr10I RCCGGY 1 cut(s) 418
Cfr13I GGNCC 2 cut(s) 73, 408
ClaI ATCGAT 1 cut(s) 746
CsiI ACCWGGT 1 cut(s) 249
Csp6I GTAC 5 cut(s) 144, 675, 778, 792, 800
CviAII CATG 6 cut(s) 17, 377, 383, 830, 955, 992
CviQI GTAC 5 cut(s) 144, 675, 778, 792, 800
DdeI CTNAG 2 cut(s) 561, 1156
DinI GGCGCC 1 cut(s) 1054
DpnI GATC 3 cut(s) 587, 915, 1164
DpnII GATC 3 cut(s) 585, 913, 1162
EaeI YGGCCR 1 cut(s) 880
Eam1104I CTCTTC 1 cut(s) 828
EarI CTCTTC 1 cut(s) 828
EciI GGCGGA 1 cut(s) 909
Ecl136II GAGCTC 1 cut(s) 186
Eco130I CCWWGG 2 cut(s) 382, 1114
Eco24I GRGCYC 1 cut(s) 188
Eco47I GGWCC 2 cut(s) 73, 408
Eco53kI GAGCTC 1 cut(s) 186
Eco57I CTGAAG 2 cut(s) 173, 990
Eco81I CCTNAGG 1 cut(s) 1156
Eco91I GGTNACC 2 cut(s) 257, 845
EcoICRI GAGCTC 1 cut(s) 186
EcoNI CCTNNNNNAGG 1 cut(s) 1170
EcoO109I RGGNCCY 1 cut(s) 408
EcoO65I GGTNACC 2 cut(s) 257, 845
EcoRI GAATTC 1 cut(s) 950
EcoRII CCWGG 2 cut(s) 249, 1171
EcoT14I CCWWGG 2 cut(s) 382, 1114
EcoT38I GRGCYC 1 cut(s) 188
EgeI GGCGCC 1 cut(s) 1054
EheI GGCGCC 1 cut(s) 1054
ErhI CCWWGG 2 cut(s) 382, 1114
FaeI CATG 6 cut(s) 20, 380, 386, 833, 958, 995
FaqI GGGAC 1 cut(s) 943
FatI CATG 6 cut(s) 16, 376, 382, 829, 954, 991
FbaI TGATCA 1 cut(s) 585
Fnu4HI GCNGC 1 cut(s) 1210
FokI GGATG 6 cut(s) 131, 532, 562, 623, 1008, 1140
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 1 cut(s) 1210
FspBI CTAG 2 cut(s) 821, 1023
GlaI GCGC 1 cut(s) 1054
GluI GCNGC 1 cut(s) 1210
HaeII RGCGCY 1 cut(s) 1056
HaeIII GGCC 1 cut(s) 882
HapII CCGG 2 cut(s) 412, 419
HhaI GCGC 1 cut(s) 1055
Hin1I GRCGYC 1 cut(s) 1053
Hin1II CATG 6 cut(s) 20, 380, 386, 833, 958, 995
Hin6I GCGC 1 cut(s) 1053
HinP1I GCGC 1 cut(s) 1053
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 2 cut(s) 67, 173
HpaII CCGG 2 cut(s) 412, 419
HphI GGTGA 4 cut(s) 269, 700, 857, 1172
Hpy166II GTNNAC 2 cut(s) 76, 989
Hpy188I TCNGA 7 cut(s) 39, 100, 153, 666, 907, 949, 1043
Hpy188III TCNNGA 2 cut(s) 532, 968
Hpy8I GTNNAC 2 cut(s) 76, 989
HpyAV CCTTC 6 cut(s) 646, 688, 751, 827, 861, 1118
HpyCH4III ACNGT 2 cut(s) 130, 636
HpyCH4V TGCA 6 cut(s) 32, 87, 325, 593, 1077, 1209
HpyF10VI GCNNNNNNNGC 2 cut(s) 373, 1199
HpyF3I CTNAG 2 cut(s) 561, 1156
Hsp92I GRCGYC 1 cut(s) 1053
Hsp92II CATG 6 cut(s) 20, 380, 386, 833, 958, 995
HspAI GCGC 1 cut(s) 1053
KasI GGCGCC 1 cut(s) 1052
KpnI GGTACC 1 cut(s) 781
KroI GCCGGC 1 cut(s) 418
KroNI GCCGGC 1 cut(s) 420
Ksp22I TGATCA 1 cut(s) 585
Kzo9I GATC 3 cut(s) 585, 913, 1162
LguI GCTCTTC 1 cut(s) 828
LmnI GCTCC 1 cut(s) 318
MabI ACCWGGT 1 cut(s) 249
MaeI CTAG 2 cut(s) 821, 1023
MaeIII GTNAC 2 cut(s) 257, 845
MalI GATC 3 cut(s) 587, 915, 1164
MboI GATC 3 cut(s) 585, 913, 1162
MboII GAAGA 2 cut(s) 227, 845
MfeI CAATTG 2 cut(s) 302, 1213
MhlI GDGCHC 3 cut(s) 188, 301, 315
MlsI TGGCCA 1 cut(s) 882
MluCI AATT 9 cut(s) 302, 319, 358, 484, 667, 858, 950, 1011, 1213
MluNI TGGCCA 1 cut(s) 882
Mly113I GGCGCC 1 cut(s) 1053
MlyI GAGTC 1 cut(s) 182
MmeI TCCRAC 1 cut(s) 372
MnlI CCTC 8 cut(s) 109, 126, 516, 550, 621, 798, 861, 927
Mox20I TGGCCA 1 cut(s) 882
MroNI GCCGGC 1 cut(s) 418
MscI TGGCCA 1 cut(s) 882
MseI TTAA 4 cut(s) 275, 1014, 1091, 1181
MslI CAYNNNNRTG 1 cut(s) 381
Msp20I TGGCCA 1 cut(s) 882
MspI CCGG 2 cut(s) 412, 419
MspR9I CCNGG 3 cut(s) 251, 412, 1173
MunI CAATTG 2 cut(s) 302, 1213
Mva1269I GAATGC 2 cut(s) 325, 482
MvaI CCWGG 2 cut(s) 251, 1173
MwoI GCNNNNNNNGC 2 cut(s) 373, 1199
NaeI GCCGGC 1 cut(s) 420
NarI GGCGCC 1 cut(s) 1053
NciI CCSGG 1 cut(s) 412
NcoI CCATGG 1 cut(s) 382
NdeII GATC 3 cut(s) 585, 913, 1162
NgoMIV GCCGGC 1 cut(s) 418
NheI GCTAGC 1 cut(s) 1022
NlaIII CATG 6 cut(s) 20, 380, 386, 833, 958, 995
NlaIV GGNNCC 5 cut(s) 74, 298, 410, 779, 1054
NmeAIII GCCGAG 1 cut(s) 492
NmuCI GTSAC 2 cut(s) 257, 845
NspI RCATGY 1 cut(s) 380
PaeI GCATGC 1 cut(s) 380
PciSI GCTCTTC 1 cut(s) 828
PctI GAATGC 2 cut(s) 325, 482
PdiI GCCGGC 1 cut(s) 420
PfeI GAWTC 1 cut(s) 67
PflMI CCANNNNNTGG 1 cut(s) 933
PkrI GCNGC 1 cut(s) 1211
PleI GAGTC 1 cut(s) 181
PluTI GGCGCC 1 cut(s) 1056
PpsI GAGTC 1 cut(s) 181
PpuMI RGGWCCY 1 cut(s) 408
PsiI TTATAA 1 cut(s) 93
Psp124BI GAGCTC 1 cut(s) 188
Psp5II RGGWCCY 1 cut(s) 408
Psp6I CCWGG 2 cut(s) 249, 1171
PspEI GGTNACC 2 cut(s) 257, 845
PspGI CCWGG 2 cut(s) 249, 1171
PspN4I GGNNCC 5 cut(s) 74, 298, 410, 779, 1054
PspPI GGNCC 2 cut(s) 73, 408
PspPPI RGGWCCY 1 cut(s) 408
PstI CTGCAG 1 cut(s) 89
PstNI CAGNNNCTG 2 cut(s) 911, 1047
RsaI GTAC 5 cut(s) 145, 676, 779, 793, 801
RsaNI GTAC 5 cut(s) 144, 675, 778, 792, 800
RseI CAYNNNNRTG 1 cut(s) 381
SacI GAGCTC 1 cut(s) 188
SapI GCTCTTC 1 cut(s) 828
SaqAI TTAA 4 cut(s) 275, 1014, 1091, 1181
SatI GCNGC 1 cut(s) 1210
Sau3AI GATC 3 cut(s) 585, 913, 1162
Sau96I GGNCC 2 cut(s) 73, 408
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 3 cut(s) 251, 412, 1173
SduI GDGCHC 3 cut(s) 188, 301, 315
SexAI ACCWGGT 1 cut(s) 249
SfcI CTRYAG 1 cut(s) 85
SfoI GGCGCC 1 cut(s) 1054
SinI GGWCC 2 cut(s) 73, 408
SmiMI CAYNNNNRTG 1 cut(s) 381
SphI GCATGC 1 cut(s) 380
Sse9I AATT 9 cut(s) 302, 319, 358, 484, 667, 858, 950, 1011, 1213
SsiI CCGC 1 cut(s) 920
SspDI GGCGCC 1 cut(s) 1052
SspMI CTAG 2 cut(s) 821, 1023
SstI GAGCTC 1 cut(s) 188
StyD4I CCNGG 3 cut(s) 249, 410, 1171
StyI CCWWGG 2 cut(s) 382, 1114
TaaI ACNGT 2 cut(s) 130, 636
TaqI TCGA 3 cut(s) 335, 746, 1133
TasI AATT 9 cut(s) 302, 319, 358, 484, 667, 858, 950, 1011, 1213
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 4 cut(s) 275, 1014, 1091, 1181
Tru9I TTAA 4 cut(s) 275, 1014, 1091, 1181
TscAI CASTG 2 cut(s) 135, 916
TseFI GTSAC 2 cut(s) 257, 845
TseI GCWGC 1 cut(s) 1209
Tsp45I GTSAC 2 cut(s) 257, 845
TspDTI ATGAA 4 cut(s) 138, 738, 846, 943
TspGWI ACGGA 2 cut(s) 166, 220
TspRI CASTG 2 cut(s) 135, 916
Van91I CCANNNNNTGG 1 cut(s) 933
VpaK11BI GGWCC 2 cut(s) 73, 408
XagI CCTNNNNNAGG 1 cut(s) 1170
XapI RAATTY 4 cut(s) 319, 667, 858, 950
XceI RCATGY 1 cut(s) 380
XcmI CCANNNNNNNNNTGG 2 cut(s) 836, 1063
XspI CTAG 2 cut(s) 821, 1023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.