Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034360.1

Orthogroup ID

OG0001276

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1321

Gene Structure 1320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034360.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

atgggtttagcttcacatgggagaaaccttgcatttcagattggtaatccaaaatcaaggcttttgattcgggtccagtgctgcagttatcaatcagagagtaaaaagcaagaggatgatgaaacagtgagggaaatctgtaccattctgaagcgaagcagagagtgggagtccgtgttgagctcatcagggtttcccaagaagctaaaccctcgggtggttcgatccgttcttcaacaacaccaccaggttggtgacccagaaagacttttaagtttctttgattggtctggtacccaattgggtgtgctcccaaatttgcattctttttcgattatggctcttgttttgtgtaattccaagctttttgggcatgcccgtggtgtgttggagagaatggttaggacccggaagccggctttagaagttttggattctgttgttaggtgttttagacggtttgaggggtctgatatggtggtttttgagattttgatcaatgtgtttaggatggggggttggttttatgaggctgctgatgtgtttttggctgttacgagtgttgggatttcgcccagattggaatgctgtaattctctgttgaatgacttgttgaagggtaataggatgaggctgttctggaaagtgtatgatgggatgttagaggctaagattgagccggatttttacacttatagcaatgtgatcaacgcacattgtaagtttggggatgttaggcagggtaagaggctactggttgagatggtacagaagggctgtaatccgaatttgagtaccttcaatgtggtgattgatggattgtgtacaagtagggctgttgatgaagccattgagttgaaaaaatcaatggttgagaagggattgacccctgataggtatacttattcaatactagttgatggattgtgcagacagaagagatcagaagaagcaaagatggtattgaacgagatgtatgatataggtttgaatcctgaccgcaccttgtacattgctttgattgatggattcttgaaagaaagtaacgtggataaggccctgaggatcaaagaagagatggtcgctcgaggagttaagttgtgcagtgtcacatataatgtgatttttgcagggatctgtaaaataggtaagatgaagaaggcagagtctcttttgaatgagatgaatgctatgggaattgaacctaatacccagacatataactatttaattgatgggcactgtcgggagcaaaatgtaaacaagggttatgcattacttaatgagatgaagcaaaggaacttgacacccaatgaggtc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230

Pfam Domains

Protein Families

Mem_trans PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

440

Amino Acids

50.04

Weight (kDa)

8.81

Isoelectric Point (pI)

36.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61990
fragaria_vesca	FvH4_5g09340 FvH4_5g09340 FvH4_5g09340 FvH4_5g09340
malus_domestica	MD06G1131900.v1.1 MD14G1148300.v1.1
prunus_persica	Prupe.5G142900_v2.0.a1 Prupe.5G142900_v2.0.a1
pyrus_communis	pycom06g12350 pycom14g12300
rosa_chinensis	RchiOBHm_Chr1g0325241 RchiOBHm_Chr1g0325261 RchiOBHm_Chr2g0162681 RchiOBHm_Chr7g0188811 RchiOBHm_Chr7g0229441
rosa_laevigata	RLG00000004657 RLG00000028121 RLG00000028122 RLG00000031426 RLG00000035825
rosa_multiflora	Rmu_sc0001621.1_g000013 Rmu_sc0001918.1_g000006 Rmu_sc0004279.1_g000018 Rmu_sc0034360.1_g000001 Rmu_sc0034361.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266000 Rroxscaffold_5G00381140
rosa_rugosa	Rorug02G0360500 Rorug05G0369000 Rorug06G0494100 Rorug07G0156300
rosa_samantha	Rh1BG033100 Rh2CG348200 Rh2CG348300 Rh4AG001800 Rh4AG163800 Rh4BG001600 Rh4BG400000 Rh4BG400100 Rh4CG415000 Rh4CG415100 Rh6DG332400 Rh6DG332500 Rh7AG098900 Rh7AG408500 Rh7BG100600 Rh7CG102100 Rh7CG477400 Rh7DG100700 Rh7DG406300 Rh7DG406400 Rh7DG446700
rosa_wichuraiana	Rw0G022150 Rw7G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	293
AccB1I	GGYRCC	1 cut(s)	293
AccI	GTMKAC	1 cut(s)	899
AciI	CCGC	1 cut(s)	1000
AclWI	GGATC	3 cut(s)	219, 1073, 1142
AcsI	RAATTY	2 cut(s)	316, 787
AcuI	CTGAAG	1 cut(s)	170
AfaI	GTAC	6 cut(s)	142, 295, 768, 796, 826, 1010
AfiI	CCNNNNNNNGG	3 cut(s)	217, 415, 894
AhlI	ACTAGT	1 cut(s)	913
AjnI	CCWGG	1 cut(s)	246
AjuI	GAANNNNNNNTTGG	2 cut(s)	307, 339
AluBI	AGCT	4 cut(s)	11, 183, 205, 364
AluI	AGCT	4 cut(s)	11, 183, 205, 364
Alw21I	GWGCWC	2 cut(s)	185, 312
Alw26I	GTCTC	1 cut(s)	1173
AlwI	GGATC	3 cut(s)	219, 1073, 1142
Ama87I	CYCGRG	2 cut(s)	213, 1086
AoxI	GGCC	1 cut(s)	1056
ApeKI	GCWGC	2 cut(s)	81, 533
ApoI	RAATTY	2 cut(s)	316, 787
Asp718I	GGTACC	1 cut(s)	293
AspS9I	GGNCC	3 cut(s)	73, 405, 1057
AsuC2I	CCSGG	1 cut(s)	409
AsuHPI	GGTGA	2 cut(s)	266, 820
AvaI	CYCGRG	2 cut(s)	213, 1086
AvaII	GGWCC	2 cut(s)	73, 405
AxyI	CCTNAGG	1 cut(s)	1061
BaeGI	GKGCMC	1 cut(s)	1242
BanI	GGYRCC	1 cut(s)	293
BanII	GRGCYC	1 cut(s)	185
Bbv12I	GWGCWC	2 cut(s)	185, 312
BbvI	GCAGC	2 cut(s)	68, 520
BccI	CCATC	9 cut(s)	505, 647, 757, 809, 914, 952, 1019, 1072, 1229
BciT130I	CCWGG	1 cut(s)	248
BclI	TGATCA	2 cut(s)	495, 705
BcnI	CCSGG	1 cut(s)	409
BcoDI	GTCTC	1 cut(s)	1173
BcuI	ACTAGT	1 cut(s)	913
BfaI	CTAG	1 cut(s)	914
BfmI	CTRYAG	1 cut(s)	82
BisI	GCNGC	2 cut(s)	82, 534
BlsI	GCNGC	2 cut(s)	83, 535
Bme1390I	CCNGG	2 cut(s)	248, 409
Bme18I	GGWCC	2 cut(s)	73, 405
BmeT110I	CYCGRG	2 cut(s)	213, 1086
BmgT120I	GGNCC	3 cut(s)	73, 405, 1057
BmiI	GGNNCC	3 cut(s)	74, 295, 407
BmrFI	CCNGG	2 cut(s)	248, 409
BpuMI	CCSGG	1 cut(s)	409
BsaBI	GATNNNNATC	1 cut(s)	494
BsaJI	CCNNGG	2 cut(s)	212, 379
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	3 cut(s)	217, 415, 894
Bse118I	RCCGGY	1 cut(s)	415
Bse1I	ACTGG	2 cut(s)	76, 759
Bse21I	CCTNAGG	1 cut(s)	1061
Bse3DI	GCAATG	2 cut(s)	706, 1011
Bse8I	GATNNNNATC	1 cut(s)	494
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	2 cut(s)	212, 379
BseGI	GGATG	5 cut(s)	121, 516, 633, 663, 736
BseJI	GATNNNNATC	1 cut(s)	494
BseLI	CCNNNNNNNGG	3 cut(s)	217, 415, 894
BseMI	GCAATG	2 cut(s)	706, 1011
BseMII	CTCAG	1 cut(s)	1052
BseNI	ACTGG	2 cut(s)	76, 759
BseRI	GAGGAG	1 cut(s)	1104
BseSI	GKGCMC	1 cut(s)	1242
BseXI	GCAGC	2 cut(s)	68, 520
BsgI	GTGCAG	2 cut(s)	949, 1123
BshFI	GGCC	1 cut(s)	1058
BshNI	GGYRCC	1 cut(s)	293
BsiHKAI	GWGCWC	2 cut(s)	185, 312
BsiHKCI	CYCGRG	2 cut(s)	213, 1086
BsiSI	CCGG	3 cut(s)	409, 416, 680
BslI	CCNNNNNNNGG	3 cut(s)	217, 415, 894
BsmAI	GTCTC	1 cut(s)	1173
BsmI	GAATGC	3 cut(s)	322, 590, 1192
BsnI	GGCC	1 cut(s)	1058
BsoBI	CYCGRG	2 cut(s)	213, 1086
Bsp1286I	GDGCHC	3 cut(s)	185, 312, 1242
Bsp1407I	TGTACA	2 cut(s)	824, 1008
Bsp143I	GATC	6 cut(s)	224, 495, 705, 941, 1065, 1134
BspACI	CCGC	1 cut(s)	1000
BspANI	GGCC	1 cut(s)	1058
BspCNI	CTCAG	1 cut(s)	1053
BspLI	GGNNCC	3 cut(s)	74, 295, 407
BspMAI	CTGCAG	1 cut(s)	86
BspPI	GGATC	3 cut(s)	219, 1073, 1142
BspT107I	GGYRCC	1 cut(s)	293
BsrDI	GCAATG	2 cut(s)	706, 1011
BsrFI	RCCGGY	1 cut(s)	415
BsrGI	TGTACA	2 cut(s)	824, 1008
BsrI	ACTGG	2 cut(s)	76, 759
BssAI	RCCGGY	1 cut(s)	415
BssECI	CCNNGG	2 cut(s)	212, 379
BssMI	GATC	6 cut(s)	224, 495, 705, 941, 1065, 1134
BssNAI	GTATAC	1 cut(s)	900
Bst1107I	GTATAC	1 cut(s)	900
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	3 cut(s)	127, 459, 1244
Bst6I	CTCTTC	2 cut(s)	932, 1068
BstAUI	TGTACA	2 cut(s)	824, 1008
BstC8I	GCNNGC	2 cut(s)	375, 417
BstDEI	CTNAG	2 cut(s)	669, 1061
BstDSI	CCRYGG	1 cut(s)	379
BstEII	GGTNACC	1 cut(s)	254
BstF5I	GGATG	5 cut(s)	121, 516, 633, 663, 736
BstKTI	GATC	6 cut(s)	227, 498, 708, 944, 1068, 1137
BstMAI	GTCTC	1 cut(s)	1173
BstMBI	GATC	6 cut(s)	224, 495, 705, 941, 1065, 1134
BstMWI	GCNNNNNNNGC	1 cut(s)	370
BstNI	CCWGG	1 cut(s)	248
BstNSI	RCATGY	1 cut(s)	377
BstPI	GGTNACC	1 cut(s)	254
BstSCI	CCNGG	2 cut(s)	246, 407
BstSFI	CTRYAG	1 cut(s)	82
BstSLI	GKGCMC	1 cut(s)	1242
BstV1I	GCAGC	2 cut(s)	68, 520
BstX2I	RGATCY	1 cut(s)	1134
BstXI	CCANNNNNNTGG	1 cut(s)	251
BstYI	RGATCY	1 cut(s)	1134
BstZ17I	GTATAC	1 cut(s)	900
Bsu36I	CCTNAGG	1 cut(s)	1061
BsuRI	GGCC	1 cut(s)	1058
BtgI	CCRYGG	1 cut(s)	379
BtsCI	GGATG	5 cut(s)	121, 516, 633, 663, 736
BtsI	GCAGTG	1 cut(s)	1111
BtsIMutI	CAGTG	4 cut(s)	83, 132, 1111, 1240
Cac8I	GCNNGC	2 cut(s)	375, 417
Cfr10I	RCCGGY	1 cut(s)	415
Cfr13I	GGNCC	3 cut(s)	73, 405, 1057
CsiI	ACCWGGT	1 cut(s)	246
Csp6I	GTAC	6 cut(s)	141, 294, 767, 795, 825, 1009
CviAII	CATG	2 cut(s)	17, 374
CviQI	GTAC	6 cut(s)	141, 294, 767, 795, 825, 1009
DdeI	CTNAG	2 cut(s)	669, 1061
DpnI	GATC	6 cut(s)	226, 497, 707, 943, 1067, 1136
DpnII	GATC	6 cut(s)	224, 495, 705, 941, 1065, 1134
Eam1104I	CTCTTC	2 cut(s)	932, 1068
EarI	CTCTTC	2 cut(s)	932, 1068
Ecl136II	GAGCTC	1 cut(s)	183
Eco24I	GRGCYC	1 cut(s)	185
Eco47I	GGWCC	2 cut(s)	73, 405
Eco53kI	GAGCTC	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	170
Eco81I	CCTNAGG	1 cut(s)	1061
Eco88I	CYCGRG	2 cut(s)	213, 1086
Eco91I	GGTNACC	1 cut(s)	254
EcoICRI	GAGCTC	1 cut(s)	183
EcoO109I	RGGNCCY	2 cut(s)	405, 1057
EcoO65I	GGTNACC	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	246
EcoT22I	ATGCAT	1 cut(s)	1276
EcoT38I	GRGCYC	1 cut(s)	185
FaeI	CATG	2 cut(s)	20, 377
FatI	CATG	2 cut(s)	16, 373
FbaI	TGATCA	2 cut(s)	495, 705
FblI	GTMKAC	1 cut(s)	899
Fnu4HI	GCNGC	2 cut(s)	82, 534
FokI	GGATG	5 cut(s)	128, 523, 640, 670, 743
FriOI	GRGCYC	1 cut(s)	185
Fsp4HI	GCNGC	2 cut(s)	82, 534
FspBI	CTAG	1 cut(s)	914
GluI	GCNGC	2 cut(s)	82, 534
HaeIII	GGCC	1 cut(s)	1058
HapII	CCGG	3 cut(s)	409, 416, 680
Hin1II	CATG	2 cut(s)	20, 377
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	6 cut(s)	67, 170, 434, 991, 1029, 1166
HpaII	CCGG	3 cut(s)	409, 416, 680
HphI	GGTGA	2 cut(s)	266, 820
Hpy166II	GTNNAC	3 cut(s)	825, 900, 1261
Hpy188I	TCNGA	6 cut(s)	39, 97, 150, 472, 786, 946
Hpy188III	TCNNGA	4 cut(s)	640, 995, 1033, 1247
Hpy8I	GTNNAC	3 cut(s)	825, 900, 1261
HpyAV	CCTTC	5 cut(s)	610, 766, 808, 871, 1153
HpyCH4III	ACNGT	3 cut(s)	127, 459, 1244
HpyCH4IV	ACGT	1 cut(s)	1047
HpyCH4V	TGCA	7 cut(s)	32, 84, 322, 930, 1104, 1130, 1274
HpyF10VI	GCNNNNNNNGC	1 cut(s)	370
HpyF3I	CTNAG	2 cut(s)	669, 1061
HpySE526I	ACGT	1 cut(s)	1047
Hsp92II	CATG	2 cut(s)	20, 377
KpnI	GGTACC	1 cut(s)	297
KroI	GCCGGC	1 cut(s)	415
KroNI	GCCGGC	1 cut(s)	417
Ksp22I	TGATCA	2 cut(s)	495, 705
Kzo9I	GATC	6 cut(s)	224, 495, 705, 941, 1065, 1134
LmnI	GCTCC	2 cut(s)	315, 1249
Lsp1109I	GCAGC	2 cut(s)	68, 520
MabI	ACCWGGT	1 cut(s)	246
MaeI	CTAG	1 cut(s)	914
MaeII	ACGT	1 cut(s)	1047
MaeIII	GTNAC	4 cut(s)	254, 553, 1043, 1108
MalI	GATC	6 cut(s)	226, 497, 707, 943, 1067, 1136
MboI	GATC	6 cut(s)	224, 495, 705, 941, 1065, 1134
MboII	GAAGA	5 cut(s)	224, 949, 959, 1085, 1168
MfeI	CAATTG	1 cut(s)	299
MflI	RGATCY	1 cut(s)	1134
MhlI	GDGCHC	3 cut(s)	185, 312, 1242
MluCI	AATT	7 cut(s)	299, 316, 355, 592, 787, 1197, 1230
MlyI	GAGTC	2 cut(s)	179, 1175
MmeI	TCCRAC	1 cut(s)	369
Mph1103I	ATGCAT	1 cut(s)	1276
MroNI	GCCGGC	1 cut(s)	415
MseI	TTAA	4 cut(s)	272, 1095, 1229, 1281
MslI	CAYNNNNRTG	1 cut(s)	378
MspI	CCGG	3 cut(s)	409, 416, 680
MspR9I	CCNGG	2 cut(s)	248, 409
MunI	CAATTG	1 cut(s)	299
Mva1269I	GAATGC	3 cut(s)	322, 590, 1192
MvaI	CCWGG	1 cut(s)	248
MwoI	GCNNNNNNNGC	1 cut(s)	370
NaeI	GCCGGC	1 cut(s)	417
NciI	CCSGG	1 cut(s)	409
NdeII	GATC	6 cut(s)	224, 495, 705, 941, 1065, 1134
NgoMIV	GCCGGC	1 cut(s)	415
NlaIII	CATG	2 cut(s)	20, 377
NlaIV	GGNNCC	3 cut(s)	74, 295, 407
NmuCI	GTSAC	2 cut(s)	254, 1108
NsiI	ATGCAT	1 cut(s)	1276
NspI	RCATGY	1 cut(s)	377
PaeI	GCATGC	1 cut(s)	377
PaeR7I	CTCGAG	1 cut(s)	1086
PcsI	WCGNNNNNNNCGW	1 cut(s)	220
PctI	GAATGC	3 cut(s)	322, 590, 1192
PdiI	GCCGGC	1 cut(s)	417
PfeI	GAWTC	4 cut(s)	67, 434, 991, 1029
PkrI	GCNGC	2 cut(s)	83, 535
PleI	GAGTC	2 cut(s)	178, 1174
PpsI	GAGTC	2 cut(s)	178, 1174
PpuMI	RGGWCCY	1 cut(s)	405
Psp124BI	GAGCTC	1 cut(s)	185
Psp5II	RGGWCCY	1 cut(s)	405
Psp6I	CCWGG	1 cut(s)	246
PspEI	GGTNACC	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	3 cut(s)	74, 295, 407
PspPI	GGNCC	3 cut(s)	73, 405, 1057
PspPPI	RGGWCCY	1 cut(s)	405
PspXI	VCTCGAGB	1 cut(s)	1086
PstI	CTGCAG	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	1134
RsaI	GTAC	6 cut(s)	142, 295, 768, 796, 826, 1010
RsaNI	GTAC	6 cut(s)	141, 294, 767, 795, 825, 1009
RseI	CAYNNNNRTG	1 cut(s)	378
SacI	GAGCTC	1 cut(s)	185
SaqAI	TTAA	4 cut(s)	272, 1095, 1229, 1281
SatI	GCNGC	2 cut(s)	82, 534
Sau3AI	GATC	6 cut(s)	224, 495, 705, 941, 1065, 1134
Sau96I	GGNCC	3 cut(s)	73, 405, 1057
SchI	GAGTC	2 cut(s)	179, 1175
ScrFI	CCNGG	2 cut(s)	248, 409
SduI	GDGCHC	3 cut(s)	185, 312, 1242
SexAI	ACCWGGT	1 cut(s)	246
SfcI	CTRYAG	1 cut(s)	82
Sfr274I	CTCGAG	1 cut(s)	1086
SinI	GGWCC	2 cut(s)	73, 405
SlaI	CTCGAG	1 cut(s)	1086
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	1086
SmoI	CTYRAG	1 cut(s)	1086
SpeI	ACTAGT	1 cut(s)	913
SphI	GCATGC	1 cut(s)	377
Sse9I	AATT	7 cut(s)	299, 316, 355, 592, 787, 1197, 1230
SsiI	CCGC	1 cut(s)	1000
SspMI	CTAG	1 cut(s)	914
SstI	GAGCTC	1 cut(s)	185
StyD4I	CCNGG	2 cut(s)	246, 407
TaaI	ACNGT	3 cut(s)	127, 459, 1244
TaiI	ACGT	1 cut(s)	1050
TaqI	TCGA	3 cut(s)	223, 332, 1087
TasI	AATT	7 cut(s)	299, 316, 355, 592, 787, 1197, 1230
TatI	WGTACW	2 cut(s)	824, 1008
TfiI	GAWTC	4 cut(s)	67, 434, 991, 1029
Tru1I	TTAA	4 cut(s)	272, 1095, 1229, 1281
Tru9I	TTAA	4 cut(s)	272, 1095, 1229, 1281
TscAI	CASTG	4 cut(s)	83, 132, 1111, 1247
TseFI	GTSAC	2 cut(s)	254, 1108
TseI	GCWGC	2 cut(s)	81, 533
Tsp45I	GTSAC	2 cut(s)	254, 1108
TspDTI	ATGAA	5 cut(s)	135, 858, 1169, 1199, 1304
TspGWI	ACGGA	2 cut(s)	163, 217
TspRI	CASTG	4 cut(s)	83, 132, 1111, 1247
VpaK11BI	GGWCC	2 cut(s)	73, 405
XapI	RAATTY	2 cut(s)	316, 787
XceI	RCATGY	1 cut(s)	377
XhoI	CTCGAG	1 cut(s)	1086
XmiI	GTMKAC	1 cut(s)	899
XspI	CTAG	1 cut(s)	914
Zsp2I	ATGCAT	1 cut(s)	1276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.