Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001276

Physical Location & Seq

Genomic Coordinates Forward (+)

54483466 .. 54484572

Gene Structure 1107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG408500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGGTTTAGCTTCACATGGGAGAAACCTTACATTTCAGATTGGTAATCCAAAATCAAGGCTTTTGATTCGGGTCCACTACTGCAGTTATAAATCAGAGAGTAAAAAGCAAGAGGATGATGAAACAGTGAGGGGAATCTGTACCATTCTAAAGCGAAGCAGAGAGTGGGAGTCCGTGTTGAGCTCATCAGGGTTTCCCAAGAAGCTAAACCCTTATGGGGTTCGATCCGTTCTTCAACAACACCACCAGGTTGGTGACCCAGAAAGATTTTTAAGTTTCTTTGATTGGTCTTGTGCCCAATTGGGTGTGCTCCCAAATTTACATTCTTTTTCGATTATTGTTGTTGTTTTGTGTAATTCCAAGCTTTTTGGGCATGCCCATGGTGTGTTGGAGAGAATAGTTAGGACCCGGAAGCCGGCTTTAGAAGTTTTGGATTGTGTTGTTAGGTGTTTTAGAGAGTTTGAGGGGTCTGATATGGTGGTTTTTGAGATTTTGATTAATATGTTTATGATGGGGGGTTGGTTTTATGAGGCTGCTGATGTGTTTTTGGGTGCTAGGAGTGTTGGGATTTCGCCGAGCTTGGAATGCTGTAATTCTTTGTTGAATGACTTGTTGAAGGGTAATAGGATGAGGCTGTTCTGGAAAGTGTACGATGGGATGTTAGAGGCTAAGATTGAGCTAGATTTTTACACTTATAGTAATGTGATCAATGCACATTGTAAGTTTGGGGATGTTAGGCAGGGTAAGAGGCTACTGTTTGAGATGGTTGATGGATTGTGTAGAAGTAGGGCTGTTGATGAAGCCATTGAGTTGAAAAAATCGATGGTTGAGAAGGGATTGACACCTAATAGGTATACATATTCAGTACTAATTGATGGATTGTGCAGACAGAAGAGATCAGAAAAAGCAAAATTGGTATTGAACGAGATGTATGATATAGGTTTGAATCCTGACCACACCATGTACATTGCTTTGATTGATGGATTCTTGAAAGAAAATAACGTGGATAAGGCCCTCAGGATCAAAGAAGAGATGGTCGCTCGAGGAGTTAAGTTGTGCGGTGTCACATATAATGTGATTTTTGCAAGGATCTGTAAAATAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230

Pfam Domains

Protein Families

Mem_trans PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

368

Amino Acids

41.98

Weight (kDa)

8.86

Isoelectric Point (pI)

34.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	193 - 241	4e-08	PPR repeat family
PPR_long	PF17177	215 - 356	1.4e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	255 - 296	3e-13	PPR repeat family
PPR_1	PF12854	278 - 310	1.8e-09	PPR repeat
PPR_3	PF13812	306 - 362	7.6e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	317 - 366	6.1e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61990
fragaria_vesca	FvH4_5g09340 FvH4_5g09340 FvH4_5g09340 FvH4_5g09340
malus_domestica	MD06G1131900.v1.1 MD14G1148300.v1.1
prunus_persica	Prupe.5G142900_v2.0.a1 Prupe.5G142900_v2.0.a1
pyrus_communis	pycom06g12350 pycom14g12300
rosa_chinensis	RchiOBHm_Chr1g0325241 RchiOBHm_Chr1g0325261 RchiOBHm_Chr2g0162681 RchiOBHm_Chr7g0188811 RchiOBHm_Chr7g0229441
rosa_laevigata	RLG00000004657 RLG00000028121 RLG00000028122 RLG00000031426 RLG00000035825
rosa_multiflora	Rmu_sc0001621.1_g000013 Rmu_sc0001918.1_g000006 Rmu_sc0004279.1_g000018 Rmu_sc0034360.1_g000001 Rmu_sc0034361.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266000 Rroxscaffold_5G00381140
rosa_rugosa	Rorug02G0360500 Rorug05G0369000 Rorug06G0494100 Rorug07G0156300
rosa_samantha	Rh1BG033100 Rh2CG348200 Rh2CG348300 Rh4AG001800 Rh4AG163800 Rh4BG001600 Rh4BG400000 Rh4BG400100 Rh4CG415000 Rh4CG415100 Rh6DG332400 Rh6DG332500 Rh7AG098900 Rh7AG408500 Rh7BG100600 Rh7CG102100 Rh7CG477400 Rh7DG100700 Rh7DG406300 Rh7DG406400 Rh7DG446700
rosa_wichuraiana	Rw0G022150 Rw7G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	854
AciI	CCGC	1 cut(s)	1059
AclWI	GGATC	3 cut(s)	219, 1028, 1097
AcsI	RAATTY	1 cut(s)	316
AfaI	GTAC	4 cut(s)	142, 650, 867, 965
AfiI	CCNNNNNNNGG	2 cut(s)	217, 415
AgsI	TTSAA	7 cut(s)	236, 604, 616, 814, 922, 946, 991
AjnI	CCWGG	1 cut(s)	246
AjuI	GAANNNNNNNTTGG	2 cut(s)	307, 339
AluBI	AGCT	6 cut(s)	11, 183, 205, 364, 579, 679
AluI	AGCT	6 cut(s)	11, 183, 205, 364, 579, 679
Alw21I	GWGCWC	2 cut(s)	185, 312
AlwI	GGATC	3 cut(s)	219, 1028, 1097
Ama87I	CYCGRG	1 cut(s)	1041
AoxI	GGCC	1 cut(s)	1011
ApeKI	GCWGC	1 cut(s)	533
ApoI	RAATTY	1 cut(s)	316
AseI	ATTAAT	1 cut(s)	498
AspS9I	GGNCC	3 cut(s)	73, 405, 1012
AsuC2I	CCSGG	1 cut(s)	409
AsuHPI	GGTGA	1 cut(s)	266
AvaI	CYCGRG	1 cut(s)	1041
AvaII	GGWCC	2 cut(s)	73, 405
AxyI	CCTNAGG	1 cut(s)	1016
BaeGI	GKGCMC	1 cut(s)	298
BanII	GRGCYC	1 cut(s)	185
Bbv12I	GWGCWC	2 cut(s)	185, 312
BbvI	GCAGC	1 cut(s)	520
BccI	CCATC	8 cut(s)	505, 647, 757, 764, 817, 869, 974, 1027
BciT130I	CCWGG	1 cut(s)	248
BclI	TGATCA	1 cut(s)	705
BcnI	CCSGG	1 cut(s)	409
BfaI	CTAG	2 cut(s)	555, 680
BfmI	CTRYAG	1 cut(s)	82
BisI	GCNGC	1 cut(s)	534
BlsI	GCNGC	1 cut(s)	535
BmcAI	AGTACT	1 cut(s)	867
Bme1390I	CCNGG	2 cut(s)	248, 409
Bme18I	GGWCC	2 cut(s)	73, 405
BmeT110I	CYCGRG	1 cut(s)	1041
BmgT120I	GGNCC	3 cut(s)	73, 405, 1012
BmiI	GGNNCC	2 cut(s)	74, 407
BmrFI	CCNGG	2 cut(s)	248, 409
BpuMI	CCSGG	1 cut(s)	409
Bsa29I	ATCGAT	1 cut(s)	821
BsaJI	CCNNGG	1 cut(s)	379
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 415
Bse118I	RCCGGY	1 cut(s)	415
Bse21I	CCTNAGG	1 cut(s)	1016
Bse3DI	GCAATG	1 cut(s)	966
BseBI	CCWGG	1 cut(s)	248
BseCI	ATCGAT	1 cut(s)	821
BseDI	CCNNGG	1 cut(s)	379
BseGI	GGATG	4 cut(s)	121, 633, 663, 736
BseLI	CCNNNNNNNGG	2 cut(s)	217, 415
BseMI	GCAATG	1 cut(s)	966
BseMII	CTCAG	1 cut(s)	1030
BseRI	GAGGAG	1 cut(s)	1059
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	520
BsgI	GTGCAG	1 cut(s)	904
BshFI	GGCC	1 cut(s)	1013
BshVI	ATCGAT	1 cut(s)	821
BsiHKAI	GWGCWC	2 cut(s)	185, 312
BsiHKCI	CYCGRG	1 cut(s)	1041
BsiSI	CCGG	2 cut(s)	409, 416
BslI	CCNNNNNNNGG	2 cut(s)	217, 415
BsmI	GAATGC	1 cut(s)	590
BsnI	GGCC	1 cut(s)	1013
BsoBI	CYCGRG	1 cut(s)	1041
Bsp1286I	GDGCHC	3 cut(s)	185, 298, 312
Bsp1407I	TGTACA	1 cut(s)	963
Bsp143I	GATC	5 cut(s)	224, 705, 896, 1020, 1089
Bsp19I	CCATGG	1 cut(s)	379
BspACI	CCGC	1 cut(s)	1059
BspANI	GGCC	1 cut(s)	1013
BspCNI	CTCAG	1 cut(s)	1029
BspDI	ATCGAT	1 cut(s)	821
BspLI	GGNNCC	2 cut(s)	74, 407
BspMAI	CTGCAG	1 cut(s)	86
BspPI	GGATC	3 cut(s)	219, 1028, 1097
BsrDI	GCAATG	1 cut(s)	966
BsrFI	RCCGGY	1 cut(s)	415
BsrGI	TGTACA	1 cut(s)	963
BssAI	RCCGGY	1 cut(s)	415
BssECI	CCNNGG	1 cut(s)	379
BssMI	GATC	5 cut(s)	224, 705, 896, 1020, 1089
BssNAI	GTATAC	1 cut(s)	855
BssT1I	CCWWGG	1 cut(s)	379
Bst1107I	GTATAC	1 cut(s)	855
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	2 cut(s)	127, 756
Bst6I	CTCTTC	2 cut(s)	887, 1023
BstAUI	TGTACA	1 cut(s)	963
BstC8I	GCNNGC	2 cut(s)	375, 417
BstDEI	CTNAG	2 cut(s)	669, 1016
BstDSI	CCRYGG	1 cut(s)	379
BstEII	GGTNACC	1 cut(s)	254
BstF5I	GGATG	4 cut(s)	121, 633, 663, 736
BstKTI	GATC	5 cut(s)	227, 708, 899, 1023, 1092
BstMBI	GATC	5 cut(s)	224, 705, 896, 1020, 1089
BstMWI	GCNNNNNNNGC	2 cut(s)	370, 585
BstNI	CCWGG	1 cut(s)	248
BstNSI	RCATGY	1 cut(s)	377
BstPI	GGTNACC	1 cut(s)	254
BstSCI	CCNGG	2 cut(s)	246, 407
BstSFI	CTRYAG	1 cut(s)	82
BstSLI	GKGCMC	1 cut(s)	298
BstV1I	GCAGC	1 cut(s)	520
BstX2I	RGATCY	1 cut(s)	1089
BstXI	CCANNNNNNTGG	1 cut(s)	251
BstYI	RGATCY	1 cut(s)	1089
BstZ17I	GTATAC	1 cut(s)	855
Bsu15I	ATCGAT	1 cut(s)	821
Bsu36I	CCTNAGG	1 cut(s)	1016
BsuRI	GGCC	1 cut(s)	1013
BsuTUI	ATCGAT	1 cut(s)	821
BtgI	CCRYGG	1 cut(s)	379
BtsCI	GGATG	4 cut(s)	121, 633, 663, 736
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	375, 417
Cfr10I	RCCGGY	1 cut(s)	415
Cfr13I	GGNCC	3 cut(s)	73, 405, 1012
ClaI	ATCGAT	1 cut(s)	821
CsiI	ACCWGGT	1 cut(s)	246
Csp6I	GTAC	4 cut(s)	141, 649, 866, 964
CviAII	CATG	4 cut(s)	17, 374, 380, 961
CviQI	GTAC	4 cut(s)	141, 649, 866, 964
DdeI	CTNAG	2 cut(s)	669, 1016
DpnI	GATC	5 cut(s)	226, 707, 898, 1022, 1091
DpnII	GATC	5 cut(s)	224, 705, 896, 1020, 1089
Eam1104I	CTCTTC	2 cut(s)	887, 1023
EarI	CTCTTC	2 cut(s)	887, 1023
Ecl136II	GAGCTC	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	379
Eco24I	GRGCYC	1 cut(s)	185
Eco47I	GGWCC	2 cut(s)	73, 405
Eco53kI	GAGCTC	1 cut(s)	183
Eco81I	CCTNAGG	1 cut(s)	1016
Eco88I	CYCGRG	1 cut(s)	1041
Eco91I	GGTNACC	1 cut(s)	254
EcoICRI	GAGCTC	1 cut(s)	183
EcoO109I	RGGNCCY	2 cut(s)	405, 1012
EcoO65I	GGTNACC	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	379
FaeI	CATG	4 cut(s)	20, 377, 383, 964
FatI	CATG	4 cut(s)	16, 373, 379, 960
FbaI	TGATCA	1 cut(s)	705
FblI	GTMKAC	1 cut(s)	854
Fnu4HI	GCNGC	1 cut(s)	534
FokI	GGATG	4 cut(s)	128, 640, 670, 743
FriOI	GRGCYC	1 cut(s)	185
Fsp4HI	GCNGC	1 cut(s)	534
FspBI	CTAG	2 cut(s)	555, 680
GluI	GCNGC	1 cut(s)	534
HaeIII	GGCC	1 cut(s)	1013
HapII	CCGG	2 cut(s)	409, 416
Hin1II	CATG	4 cut(s)	20, 377, 383, 964
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	5 cut(s)	67, 135, 170, 946, 984
HpaII	CCGG	2 cut(s)	409, 416
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	3 cut(s)	76, 649, 855
Hpy188I	TCNGA	4 cut(s)	39, 97, 472, 901
Hpy188III	TCNNGA	4 cut(s)	640, 950, 988, 1018
Hpy8I	GTNNAC	3 cut(s)	76, 649, 855
HpyAV	CCTTC	2 cut(s)	610, 826
HpyCH4III	ACNGT	2 cut(s)	127, 756
HpyCH4IV	ACGT	1 cut(s)	1002
HpyCH4V	TGCA	4 cut(s)	84, 713, 885, 1085
HpyF10VI	GCNNNNNNNGC	2 cut(s)	370, 585
HpyF3I	CTNAG	2 cut(s)	669, 1016
HpySE526I	ACGT	1 cut(s)	1002
Hsp92II	CATG	4 cut(s)	20, 377, 383, 964
KroI	GCCGGC	1 cut(s)	415
KroNI	GCCGGC	1 cut(s)	417
Ksp22I	TGATCA	1 cut(s)	705
Kzo9I	GATC	5 cut(s)	224, 705, 896, 1020, 1089
LmnI	GCTCC	1 cut(s)	315
Lsp1109I	GCAGC	1 cut(s)	520
MabI	ACCWGGT	1 cut(s)	246
MaeI	CTAG	2 cut(s)	555, 680
MaeII	ACGT	1 cut(s)	1002
MaeIII	GTNAC	2 cut(s)	254, 1063
MalI	GATC	5 cut(s)	226, 707, 898, 1022, 1091
MboI	GATC	5 cut(s)	224, 705, 896, 1020, 1089
MboII	GAAGA	3 cut(s)	224, 904, 1040
MfeI	CAATTG	1 cut(s)	299
MflI	RGATCY	1 cut(s)	1089
MhlI	GDGCHC	3 cut(s)	185, 298, 312
MluCI	AATT	6 cut(s)	299, 316, 355, 592, 870, 911
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	9 cut(s)	106, 123, 457, 523, 624, 658, 741, 1025, 1037
MroNI	GCCGGC	1 cut(s)	415
MseI	TTAA	3 cut(s)	272, 498, 1050
MslI	CAYNNNNRTG	1 cut(s)	378
MspI	CCGG	2 cut(s)	409, 416
MspR9I	CCNGG	2 cut(s)	248, 409
MunI	CAATTG	1 cut(s)	299
Mva1269I	GAATGC	1 cut(s)	590
MvaI	CCWGG	1 cut(s)	248
MwoI	GCNNNNNNNGC	2 cut(s)	370, 585
NaeI	GCCGGC	1 cut(s)	417
NciI	CCSGG	1 cut(s)	409
NcoI	CCATGG	1 cut(s)	379
NdeII	GATC	5 cut(s)	224, 705, 896, 1020, 1089
NgoMIV	GCCGGC	1 cut(s)	415
NlaIII	CATG	4 cut(s)	20, 377, 383, 964
NlaIV	GGNNCC	2 cut(s)	74, 407
NmeAIII	GCCGAG	1 cut(s)	600
NmuCI	GTSAC	2 cut(s)	254, 1063
NspI	RCATGY	1 cut(s)	377
PaeI	GCATGC	1 cut(s)	377
PaeR7I	CTCGAG	1 cut(s)	1041
PctI	GAATGC	1 cut(s)	590
PdiI	GCCGGC	1 cut(s)	417
PfeI	GAWTC	4 cut(s)	67, 135, 946, 984
PkrI	GCNGC	1 cut(s)	535
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
PpuMI	RGGWCCY	1 cut(s)	405
PshBI	ATTAAT	1 cut(s)	498
PsiI	TTATAA	1 cut(s)	90
Psp124BI	GAGCTC	1 cut(s)	185
Psp5II	RGGWCCY	1 cut(s)	405
Psp6I	CCWGG	1 cut(s)	246
PspEI	GGTNACC	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	2 cut(s)	74, 407
PspPI	GGNCC	3 cut(s)	73, 405, 1012
PspPPI	RGGWCCY	1 cut(s)	405
PspXI	VCTCGAGB	1 cut(s)	1041
PstI	CTGCAG	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	1089
RsaI	GTAC	4 cut(s)	142, 650, 867, 965
RsaNI	GTAC	4 cut(s)	141, 649, 866, 964
RseI	CAYNNNNRTG	1 cut(s)	378
SacI	GAGCTC	1 cut(s)	185
SaqAI	TTAA	3 cut(s)	272, 498, 1050
SatI	GCNGC	1 cut(s)	534
Sau3AI	GATC	5 cut(s)	224, 705, 896, 1020, 1089
Sau96I	GGNCC	3 cut(s)	73, 405, 1012
ScaI	AGTACT	1 cut(s)	867
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	2 cut(s)	248, 409
SduI	GDGCHC	3 cut(s)	185, 298, 312
SexAI	ACCWGGT	1 cut(s)	246
SfcI	CTRYAG	1 cut(s)	82
Sfr274I	CTCGAG	1 cut(s)	1041
SinI	GGWCC	2 cut(s)	73, 405
SlaI	CTCGAG	1 cut(s)	1041
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	1041
SmoI	CTYRAG	1 cut(s)	1041
SphI	GCATGC	1 cut(s)	377
Sse9I	AATT	6 cut(s)	299, 316, 355, 592, 870, 911
SsiI	CCGC	1 cut(s)	1059
SspMI	CTAG	2 cut(s)	555, 680
SstI	GAGCTC	1 cut(s)	185
StyD4I	CCNGG	2 cut(s)	246, 407
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	2 cut(s)	127, 756
TaiI	ACGT	1 cut(s)	1005
TaqI	TCGA	4 cut(s)	223, 332, 821, 1042
TasI	AATT	6 cut(s)	299, 316, 355, 592, 870, 911
TatI	WGTACW	2 cut(s)	865, 963
TfiI	GAWTC	4 cut(s)	67, 135, 946, 984
Tru1I	TTAA	3 cut(s)	272, 498, 1050
Tru9I	TTAA	3 cut(s)	272, 498, 1050
TscAI	CASTG	1 cut(s)	132
TseFI	GTSAC	2 cut(s)	254, 1063
TseI	GCWGC	1 cut(s)	533
Tsp45I	GTSAC	2 cut(s)	254, 1063
TspDTI	ATGAA	2 cut(s)	135, 813
TspGWI	ACGGA	2 cut(s)	163, 217
TspRI	CASTG	1 cut(s)	132
VpaK11BI	GGWCC	2 cut(s)	73, 405
VspI	ATTAAT	1 cut(s)	498
XapI	RAATTY	1 cut(s)	316
XceI	RCATGY	1 cut(s)	377
XhoI	CTCGAG	1 cut(s)	1041
XmiI	GTMKAC	1 cut(s)	854
XspI	CTAG	2 cut(s)	555, 680
ZrmI	AGTACT	1 cut(s)	867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.