Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001276

Physical Location & Seq

Genomic Coordinates Reverse (-)

4558231 .. 4558599

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG033100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCCGTTGTTTTGTGTAATTCCAAGCTTTTTGGGCATGCCCATGGTGTGTTGGAGAGAATGGTTAGGACCCGGAAGCCGGCTTTAGAAGTTTTGGATTGTGTTGTTAGGTGTTTTAGAGAGTTTGAGGGGTCTGATATGGTGGTTTTTGAGATTTTGATTAATGTGTTTACGATGGGGGGTTGGTTTTATGAGGCTGCTGATGTGTTTTTGGGTGTTAGGAGTGTTGGGATTTCGCCGAGATTGGAATGCTGTAATTCTCTGTTGAATGAGTTGTTGAAGGGTAATAGGATGAAGCTGTTCTGTAGAATTTGTTCAGTTAATCTGAAATGCCATTTTTATTTTCTGTTGTGTTTTCTTTGCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230

Pfam Domains

Protein Families

Mem_trans PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

122

Amino Acids

13.95

Weight (kDa)

8.37

Isoelectric Point (pI)

28.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61990
fragaria_vesca	FvH4_5g09340 FvH4_5g09340 FvH4_5g09340 FvH4_5g09340
malus_domestica	MD06G1131900.v1.1 MD14G1148300.v1.1
prunus_persica	Prupe.5G142900_v2.0.a1 Prupe.5G142900_v2.0.a1
pyrus_communis	pycom06g12350 pycom14g12300
rosa_chinensis	RchiOBHm_Chr1g0325241 RchiOBHm_Chr1g0325261 RchiOBHm_Chr2g0162681 RchiOBHm_Chr7g0188811 RchiOBHm_Chr7g0229441
rosa_laevigata	RLG00000004657 RLG00000028121 RLG00000028122 RLG00000031426 RLG00000035825
rosa_multiflora	Rmu_sc0001621.1_g000013 Rmu_sc0001918.1_g000006 Rmu_sc0004279.1_g000018 Rmu_sc0034360.1_g000001 Rmu_sc0034361.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266000 Rroxscaffold_5G00381140
rosa_rugosa	Rorug02G0360500 Rorug05G0369000 Rorug06G0494100 Rorug07G0156300
rosa_samantha	Rh1BG033100 Rh2CG348200 Rh2CG348300 Rh4AG001800 Rh4AG163800 Rh4BG001600 Rh4BG400000 Rh4BG400100 Rh4CG415000 Rh4CG415100 Rh6DG332400 Rh6DG332500 Rh7AG098900 Rh7AG408500 Rh7BG100600 Rh7CG102100 Rh7CG477400 Rh7DG100700 Rh7DG406300 Rh7DG406400 Rh7DG446700
rosa_wichuraiana	Rw0G022150 Rw7G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	309
AfiI	CCNNNNNNNGG	1 cut(s)	79
AgsI	TTSAA	2 cut(s)	268, 280
AluBI	AGCT	2 cut(s)	28, 298
AluI	AGCT	2 cut(s)	28, 298
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	1 cut(s)	309
AseI	ATTAAT	1 cut(s)	162
Asp700I	GAANNNNTTC	2 cut(s)	299, 313
AspS9I	GGNCC	1 cut(s)	69
AsuC2I	CCSGG	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	1 cut(s)	169
BcnI	CCSGG	1 cut(s)	73
BfmI	CTRYAG	1 cut(s)	304
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme1390I	CCNGG	1 cut(s)	73
Bme18I	GGWCC	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	71
BmrFI	CCNGG	1 cut(s)	73
BpuMI	CCSGG	1 cut(s)	73
BsaJI	CCNNGG	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
Bse118I	RCCGGY	1 cut(s)	79
BseDI	CCNNGG	1 cut(s)	43
BseGI	GGATG	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseXI	GCAGC	1 cut(s)	184
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	2 cut(s)	73, 80
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmI	GAATGC	1 cut(s)	254
BsnI	GGCC	1 cut(s)	5
Bsp19I	CCATGG	1 cut(s)	43
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	71
BsrFI	RCCGGY	1 cut(s)	79
BssAI	RCCGGY	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	43
BssT1I	CCWWGG	1 cut(s)	43
BstC8I	GCNNGC	2 cut(s)	39, 81
BstDSI	CCRYGG	1 cut(s)	43
BstF5I	GGATG	1 cut(s)	297
BstMWI	GCNNNNNNNGC	1 cut(s)	34
BstNSI	RCATGY	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	71
BstSFI	CTRYAG	1 cut(s)	304
BstV1I	GCAGC	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	297
Cac8I	GCNNGC	2 cut(s)	39, 81
Cfr10I	RCCGGY	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	69
CviAII	CATG	2 cut(s)	38, 44
CviJI	RGCY	6 cut(s)	5, 28, 79, 83, 197, 298
CviKI_1	RGCY	6 cut(s)	5, 28, 79, 83, 197, 298
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	69
EcoO109I	RGGNCCY	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	43
ErhI	CCWWGG	1 cut(s)	43
FaeI	CATG	2 cut(s)	41, 47
FaiI	YATR	4 cut(s)	39, 45, 140, 192
FatI	CATG	2 cut(s)	37, 43
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	1 cut(s)	304
Fsp4HI	GCNGC	1 cut(s)	198
GluI	GCNGC	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	73, 80
Hin1II	CATG	2 cut(s)	41, 47
HindIII	AAGCTT	1 cut(s)	26
HpaII	CCGG	2 cut(s)	73, 80
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188I	TCNGA	2 cut(s)	136, 327
Hpy8I	GTNNAC	1 cut(s)	171
HpyAV	CCTTC	1 cut(s)	274
HpyCH4V	TGCA	1 cut(s)	363
HpyF10VI	GCNNNNNNNGC	1 cut(s)	34
Hsp92II	CATG	2 cut(s)	41, 47
KroI	GCCGGC	1 cut(s)	79
KroNI	GCCGGC	1 cut(s)	81
LpnPI	CCDG	2 cut(s)	86, 93
Lsp1109I	GCAGC	1 cut(s)	184
MluCI	AATT	3 cut(s)	19, 256, 309
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	2 cut(s)	121, 187
MroNI	GCCGGC	1 cut(s)	79
MroXI	GAANNNNTTC	2 cut(s)	299, 313
MseI	TTAA	2 cut(s)	162, 321
MslI	CAYNNNNRTG	1 cut(s)	42
MspI	CCGG	2 cut(s)	73, 80
MspR9I	CCNGG	1 cut(s)	73
Mva1269I	GAATGC	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	34
NaeI	GCCGGC	1 cut(s)	81
NciI	CCSGG	1 cut(s)	73
NcoI	CCATGG	1 cut(s)	43
NgoMIV	GCCGGC	1 cut(s)	79
NlaIII	CATG	2 cut(s)	41, 47
NlaIV	GGNNCC	1 cut(s)	71
NmeAIII	GCCGAG	1 cut(s)	264
NspI	RCATGY	1 cut(s)	41
PaeI	GCATGC	1 cut(s)	41
PctI	GAATGC	1 cut(s)	254
PdiI	GCCGGC	1 cut(s)	81
PdmI	GAANNNNTTC	2 cut(s)	299, 313
PkrI	GCNGC	1 cut(s)	199
PpuMI	RGGWCCY	1 cut(s)	69
PshBI	ATTAAT	1 cut(s)	162
Psp5II	RGGWCCY	1 cut(s)	69
PspN4I	GGNNCC	1 cut(s)	71
PspPI	GGNCC	1 cut(s)	69
PspPPI	RGGWCCY	1 cut(s)	69
PsrI	GAACNNNNNNTAC	2 cut(s)	298, 330
RseI	CAYNNNNRTG	1 cut(s)	42
SaqAI	TTAA	2 cut(s)	162, 321
SatI	GCNGC	1 cut(s)	198
Sau96I	GGNCC	1 cut(s)	69
ScrFI	CCNGG	1 cut(s)	73
SetI	ASST	4 cut(s)	30, 113, 300, 368
SfcI	CTRYAG	1 cut(s)	304
SgeI	CNNG	7 cut(s)	37, 50, 56, 84, 85, 92, 252
SinI	GGWCC	1 cut(s)	69
SmiMI	CAYNNNNRTG	1 cut(s)	42
SphI	GCATGC	1 cut(s)	41
Sse9I	AATT	3 cut(s)	19, 256, 309
StyD4I	CCNGG	1 cut(s)	71
StyI	CCWWGG	1 cut(s)	43
TasI	AATT	3 cut(s)	19, 256, 309
Tru1I	TTAA	2 cut(s)	162, 321
Tru9I	TTAA	2 cut(s)	162, 321
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	69
VspI	ATTAAT	1 cut(s)	162
XapI	RAATTY	1 cut(s)	309
XceI	RCATGY	1 cut(s)	41
XmnI	GAANNNNTTC	2 cut(s)	299, 313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.