Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001276

Physical Location & Seq

Genomic Coordinates Reverse (-)

56750688 .. 56753747

Gene Structure 3060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG406400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGGTTTAACTTCACATGGGAGAAACCTTACATTTCAGATTGGTAATCCAAAATCAAGGCTTTTGATTCGGGTCCACTACTGTAGTTATAAATCAGAGAGTAAAAAGCAAGAGGATGATGAAACAGTGAGGGAAATCTATACCATTCTGAAGCGAAGCAGAGAGTGGGAGTCCGTGTTGAGCTCATCAGGGTTTCCCAAGAAGTTAAACCCTTATGGGGTTCGATCCGTTCTTCAACAACACCACCAGGTTGGTGACCCAGAAAGACTTTTAAGTTTCTTTGATTGGTCTTGTGCCCAATTGGGTGAGCTCCCAAATTTGCATTTTTTTTTTTCGATTATGGCTGTTGTTTTGTGTAATTCCAAGCTTTTTGGGCATGCTGATAGCTCTTTTAGAAGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230

Pfam Domains

Protein Families

Mem_trans PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

134

Amino Acids

15.49

Weight (kDa)

9.07

Isoelectric Point (pI)

50.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61990
fragaria_vesca	FvH4_5g09340 FvH4_5g09340 FvH4_5g09340 FvH4_5g09340
malus_domestica	MD06G1131900.v1.1 MD14G1148300.v1.1
prunus_persica	Prupe.5G142900_v2.0.a1 Prupe.5G142900_v2.0.a1
pyrus_communis	pycom06g12350 pycom14g12300
rosa_chinensis	RchiOBHm_Chr1g0325241 RchiOBHm_Chr1g0325261 RchiOBHm_Chr2g0162681 RchiOBHm_Chr7g0188811 RchiOBHm_Chr7g0229441
rosa_laevigata	RLG00000004657 RLG00000028121 RLG00000028122 RLG00000031426 RLG00000035825
rosa_multiflora	Rmu_sc0001621.1_g000013 Rmu_sc0001918.1_g000006 Rmu_sc0004279.1_g000018 Rmu_sc0034360.1_g000001 Rmu_sc0034361.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266000 Rroxscaffold_5G00381140
rosa_rugosa	Rorug02G0360500 Rorug05G0369000 Rorug06G0494100 Rorug07G0156300
rosa_samantha	Rh1BG033100 Rh2CG348200 Rh2CG348300 Rh4AG001800 Rh4AG163800 Rh4BG001600 Rh4BG400000 Rh4BG400100 Rh4CG415000 Rh4CG415100 Rh6DG332400 Rh6DG332500 Rh7AG098900 Rh7AG408500 Rh7BG100600 Rh7CG102100 Rh7CG477400 Rh7DG100700 Rh7DG406300 Rh7DG406400 Rh7DG446700
rosa_wichuraiana	Rw0G022150 Rw7G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
AclWI	GGATC	1 cut(s)	219
AcsI	RAATTY	1 cut(s)	316
AcuI	CTGAAG	1 cut(s)	170
AfiI	CCNNNNNNNGG	1 cut(s)	217
AgsI	TTSAA	1 cut(s)	236
AjnI	CCWGG	1 cut(s)	246
AluBI	AGCT	5 cut(s)	183, 310, 367, 387, 399
AluI	AGCT	5 cut(s)	183, 310, 367, 387, 399
Alw21I	GWGCWC	2 cut(s)	185, 312
AlwI	GGATC	1 cut(s)	219
ApoI	RAATTY	1 cut(s)	316
AspS9I	GGNCC	1 cut(s)	73
AsuHPI	GGTGA	2 cut(s)	266, 317
AvaII	GGWCC	1 cut(s)	73
BaeGI	GKGCMC	1 cut(s)	298
BanII	GRGCYC	2 cut(s)	185, 312
Bbv12I	GWGCWC	2 cut(s)	185, 312
BciT130I	CCWGG	1 cut(s)	248
BfmI	CTRYAG	1 cut(s)	82
Bme1390I	CCNGG	1 cut(s)	248
Bme18I	GGWCC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	74
BmrFI	CCNGG	1 cut(s)	248
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
BseBI	CCWGG	1 cut(s)	248
BseGI	GGATG	1 cut(s)	121
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseSI	GKGCMC	1 cut(s)	298
BsiHKAI	GWGCWC	2 cut(s)	185, 312
BslI	CCNNNNNNNGG	1 cut(s)	217
Bsp1286I	GDGCHC	3 cut(s)	185, 298, 312
Bsp143I	GATC	1 cut(s)	224
BspLI	GGNNCC	1 cut(s)	74
BspPI	GGATC	1 cut(s)	219
BssMI	GATC	1 cut(s)	224
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	2 cut(s)	83, 127
BstC8I	GCNNGC	1 cut(s)	378
BstEII	GGTNACC	1 cut(s)	254
BstF5I	GGATG	1 cut(s)	121
BstKTI	GATC	1 cut(s)	227
BstMBI	GATC	1 cut(s)	224
BstMWI	GCNNNNNNNGC	1 cut(s)	373
BstNI	CCWGG	1 cut(s)	248
BstNSI	RCATGY	1 cut(s)	380
BstPI	GGTNACC	1 cut(s)	254
BstSCI	CCNGG	1 cut(s)	246
BstSFI	CTRYAG	1 cut(s)	82
BstSLI	GKGCMC	1 cut(s)	298
BstXI	CCANNNNNNTGG	1 cut(s)	251
BtsCI	GGATG	1 cut(s)	121
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	378
Cfr13I	GGNCC	1 cut(s)	73
CsiI	ACCWGGT	1 cut(s)	246
CviAII	CATG	2 cut(s)	17, 377
CviJI	RGCY	7 cut(s)	61, 183, 310, 344, 367, 387, 399
CviKI_1	RGCY	7 cut(s)	61, 183, 310, 344, 367, 387, 399
DpnI	GATC	1 cut(s)	226
DpnII	GATC	1 cut(s)	224
Ecl136II	GAGCTC	2 cut(s)	183, 310
Eco24I	GRGCYC	2 cut(s)	185, 312
Eco47I	GGWCC	1 cut(s)	73
Eco53kI	GAGCTC	2 cut(s)	183, 310
Eco57I	CTGAAG	1 cut(s)	170
Eco91I	GGTNACC	1 cut(s)	254
EcoICRI	GAGCTC	2 cut(s)	183, 310
EcoO65I	GGTNACC	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	246
EcoT38I	GRGCYC	2 cut(s)	185, 312
FaeI	CATG	2 cut(s)	20, 380
FaiI	YATR	6 cut(s)	18, 90, 141, 216, 341, 378
FatI	CATG	2 cut(s)	16, 376
FokI	GGATG	1 cut(s)	128
FriOI	GRGCYC	2 cut(s)	185, 312
Hin1II	CATG	2 cut(s)	20, 380
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	2 cut(s)	67, 170
HphI	GGTGA	2 cut(s)	266, 317
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	3 cut(s)	39, 97, 150
Hpy8I	GTNNAC	1 cut(s)	76
HpyCH4III	ACNGT	2 cut(s)	83, 127
HpyCH4V	TGCA	1 cut(s)	322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	373
Hsp92II	CATG	2 cut(s)	20, 380
Kzo9I	GATC	1 cut(s)	224
LmnI	GCTCC	1 cut(s)	315
LpnPI	CCDG	4 cut(s)	174, 233, 260, 273
MabI	ACCWGGT	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	1 cut(s)	226
MboI	GATC	1 cut(s)	224
MboII	GAAGA	1 cut(s)	224
MfeI	CAATTG	1 cut(s)	299
MhlI	GDGCHC	3 cut(s)	185, 298, 312
MluCI	AATT	3 cut(s)	299, 316, 358
MlyI	GAGTC	1 cut(s)	179
MnlI	CCTC	2 cut(s)	106, 123
MseI	TTAA	3 cut(s)	8, 206, 272
MspR9I	CCNGG	1 cut(s)	248
MunI	CAATTG	1 cut(s)	299
MvaI	CCWGG	1 cut(s)	248
MwoI	GCNNNNNNNGC	1 cut(s)	373
NdeII	GATC	1 cut(s)	224
NlaIII	CATG	2 cut(s)	20, 380
NlaIV	GGNNCC	1 cut(s)	74
NmuCI	GTSAC	1 cut(s)	254
NspI	RCATGY	1 cut(s)	380
PaeI	GCATGC	1 cut(s)	380
PfeI	GAWTC	1 cut(s)	67
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
PsiI	TTATAA	1 cut(s)	90
Psp124BI	GAGCTC	2 cut(s)	185, 312
Psp6I	CCWGG	1 cut(s)	246
PspEI	GGTNACC	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	74
PspPI	GGNCC	1 cut(s)	73
SacI	GAGCTC	2 cut(s)	185, 312
SaqAI	TTAA	3 cut(s)	8, 206, 272
Sau3AI	GATC	1 cut(s)	224
Sau96I	GGNCC	1 cut(s)	73
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	1 cut(s)	248
SduI	GDGCHC	3 cut(s)	185, 298, 312
SetI	ASST	7 cut(s)	30, 185, 252, 312, 369, 389, 401
SexAI	ACCWGGT	1 cut(s)	246
SfcI	CTRYAG	1 cut(s)	82
SinI	GGWCC	1 cut(s)	73
SphI	GCATGC	1 cut(s)	380
Sse9I	AATT	3 cut(s)	299, 316, 358
SstI	GAGCTC	2 cut(s)	185, 312
StyD4I	CCNGG	1 cut(s)	246
TaaI	ACNGT	2 cut(s)	83, 127
TaqI	TCGA	2 cut(s)	223, 335
TasI	AATT	3 cut(s)	299, 316, 358
TfiI	GAWTC	1 cut(s)	67
Tru1I	TTAA	3 cut(s)	8, 206, 272
Tru9I	TTAA	3 cut(s)	8, 206, 272
TscAI	CASTG	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	1 cut(s)	135
TspGWI	ACGGA	2 cut(s)	163, 217
TspRI	CASTG	1 cut(s)	132
VpaK11BI	GGWCC	1 cut(s)	73
XapI	RAATTY	1 cut(s)	316
XceI	RCATGY	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.