Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001276

Physical Location & Seq

Genomic Coordinates Forward (+)

52946131 .. 52953370

Gene Structure 7240 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20552

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGTGGTTTTTGAGATTTTGATTAATATGTTTACGATGGGGGGTTGGTTTTATGAGGCTGCTGATGTGTTTTTGGGTGTTAGGAGTGTTGGGATTTCGCCGAGATTGGAATGCTGTAATTCTCTGTTGAATGACTTTTTGAAGGGTAATAGGATGAGGCTGTTCTGGAAAGTAAGTAGGGCTGTTGATGAAGCCATTGAGTTGAAAAAATTGATGGTTGAGAAGGGATTGACACCTGATAGGTATACATATTCAGTAGTAATTGATGGATTGTGCAGACAGAAGAGATCAGAAGAAGCAAAATTGGTATTGAACGAGATGTATGATATAGGTTTGAATCCTGACCGCACCATGTACATTGCTTTGATTGATGGATTCTTGAAAGAAAATAACGTGGATAAGGCCCTCAGGATCAAAGAAGAGATGGTCGCTCGAGGAGTTAAGTTGTGCGGTGTCACATATAATGTGATTTTTGCAGGGATCTGTAAAATAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230

Pfam Domains

Protein Families

Mem_trans PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

165

Amino Acids

18.79

Weight (kDa)

8.24

Isoelectric Point (pI)

27.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	59 - 151	5e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	60 - 93	1.9e-09	PPR repeat family
PPR_1	PF12854	75 - 107	1.5e-09	PPR repeat
PPR	PF01535	82 - 111	8.3e-06	PPR repeat
PPR_3	PF13812	103 - 158	2.8e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	114 - 163	1.6e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61990
fragaria_vesca	FvH4_5g09340 FvH4_5g09340 FvH4_5g09340 FvH4_5g09340
malus_domestica	MD06G1131900.v1.1 MD14G1148300.v1.1
prunus_persica	Prupe.5G142900_v2.0.a1 Prupe.5G142900_v2.0.a1
pyrus_communis	pycom06g12350 pycom14g12300
rosa_chinensis	RchiOBHm_Chr1g0325241 RchiOBHm_Chr1g0325261 RchiOBHm_Chr2g0162681 RchiOBHm_Chr7g0188811 RchiOBHm_Chr7g0229441
rosa_laevigata	RLG00000004657 RLG00000028121 RLG00000028122 RLG00000031426 RLG00000035825
rosa_multiflora	Rmu_sc0001621.1_g000013 Rmu_sc0001918.1_g000006 Rmu_sc0004279.1_g000018 Rmu_sc0034360.1_g000001 Rmu_sc0034361.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266000 Rroxscaffold_5G00381140
rosa_rugosa	Rorug02G0360500 Rorug05G0369000 Rorug06G0494100 Rorug07G0156300
rosa_samantha	Rh1BG033100 Rh2CG348200 Rh2CG348300 Rh4AG001800 Rh4AG163800 Rh4BG001600 Rh4BG400000 Rh4BG400100 Rh4CG415000 Rh4CG415100 Rh6DG332400 Rh6DG332500 Rh7AG098900 Rh7AG408500 Rh7BG100600 Rh7CG102100 Rh7CG477400 Rh7DG100700 Rh7DG406300 Rh7DG406400 Rh7DG446700
rosa_wichuraiana	Rw0G022150 Rw7G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	245
AciI	CCGC	2 cut(s)	346, 450
AclWI	GGATC	2 cut(s)	419, 488
AfaI	GTAC	1 cut(s)	356
AgsI	TTSAA	6 cut(s)	130, 142, 205, 313, 337, 382
AlwI	GGATC	2 cut(s)	419, 488
Ama87I	CYCGRG	1 cut(s)	432
AoxI	GGCC	1 cut(s)	402
ApeKI	GCWGC	1 cut(s)	59
AseI	ATTAAT	1 cut(s)	24
AspS9I	GGNCC	1 cut(s)	403
AvaI	CYCGRG	1 cut(s)	432
AxyI	CCTNAGG	1 cut(s)	407
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	5 cut(s)	31, 208, 260, 365, 418
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
BmeT110I	CYCGRG	1 cut(s)	432
BmgT120I	GGNCC	1 cut(s)	403
Bse21I	CCTNAGG	1 cut(s)	407
Bse3DI	GCAATG	1 cut(s)	357
BseGI	GGATG	1 cut(s)	159
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	1 cut(s)	421
BseRI	GAGGAG	1 cut(s)	450
BseXI	GCAGC	1 cut(s)	46
BsgI	GTGCAG	1 cut(s)	295
BshFI	GGCC	1 cut(s)	404
BsiHKCI	CYCGRG	1 cut(s)	432
BsmI	GAATGC	1 cut(s)	116
BsnI	GGCC	1 cut(s)	404
BsoBI	CYCGRG	1 cut(s)	432
Bsp1407I	TGTACA	1 cut(s)	354
Bsp143I	GATC	3 cut(s)	287, 411, 480
BspACI	CCGC	2 cut(s)	346, 450
BspANI	GGCC	1 cut(s)	404
BspCNI	CTCAG	1 cut(s)	420
BspPI	GGATC	2 cut(s)	419, 488
BsrDI	GCAATG	1 cut(s)	357
BsrGI	TGTACA	1 cut(s)	354
BssMI	GATC	3 cut(s)	287, 411, 480
BssNAI	GTATAC	1 cut(s)	246
Bst1107I	GTATAC	1 cut(s)	246
Bst6I	CTCTTC	2 cut(s)	278, 414
BstAUI	TGTACA	1 cut(s)	354
BstDEI	CTNAG	1 cut(s)	407
BstF5I	GGATG	1 cut(s)	159
BstKTI	GATC	3 cut(s)	290, 414, 483
BstMBI	GATC	3 cut(s)	287, 411, 480
BstV1I	GCAGC	1 cut(s)	46
BstX2I	RGATCY	1 cut(s)	480
BstYI	RGATCY	1 cut(s)	480
BstZ17I	GTATAC	1 cut(s)	246
Bsu36I	CCTNAGG	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	404
BtsCI	GGATG	1 cut(s)	159
Cfr13I	GGNCC	1 cut(s)	403
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	1 cut(s)	352
CviJI	RGCY	5 cut(s)	59, 160, 182, 194, 404
CviKI_1	RGCY	5 cut(s)	59, 160, 182, 194, 404
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	1 cut(s)	407
DpnI	GATC	3 cut(s)	289, 413, 482
DpnII	GATC	3 cut(s)	287, 411, 480
Eam1104I	CTCTTC	2 cut(s)	278, 414
EarI	CTCTTC	2 cut(s)	278, 414
Eco81I	CCTNAGG	1 cut(s)	407
Eco88I	CYCGRG	1 cut(s)	432
EcoO109I	RGGNCCY	1 cut(s)	403
FaeI	CATG	1 cut(s)	355
FaiI	YATR	9 cut(s)	29, 54, 246, 250, 324, 329, 353, 460, 462
FatI	CATG	1 cut(s)	351
FblI	GTMKAC	1 cut(s)	245
Fnu4HI	GCNGC	1 cut(s)	60
FokI	GGATG	1 cut(s)	166
Fsp4HI	GCNGC	1 cut(s)	60
GluI	GCNGC	1 cut(s)	60
HaeIII	GGCC	1 cut(s)	404
Hin1II	CATG	1 cut(s)	355
HinfI	GANTC	2 cut(s)	337, 375
Hpy166II	GTNNAC	2 cut(s)	33, 246
Hpy188I	TCNGA	1 cut(s)	292
Hpy188III	TCNNGA	4 cut(s)	166, 341, 379, 409
Hpy8I	GTNNAC	2 cut(s)	33, 246
HpyAV	CCTTC	2 cut(s)	136, 217
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	2 cut(s)	276, 476
HpyF3I	CTNAG	1 cut(s)	407
HpySE526I	ACGT	1 cut(s)	393
Hsp92II	CATG	1 cut(s)	355
Kzo9I	GATC	3 cut(s)	287, 411, 480
LpnPI	CCDG	5 cut(s)	151, 249, 354, 394, 462
Lsp1109I	GCAGC	1 cut(s)	46
MaeII	ACGT	1 cut(s)	393
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	3 cut(s)	289, 413, 482
MboI	GATC	3 cut(s)	287, 411, 480
MboII	GAAGA	3 cut(s)	295, 305, 431
MflI	RGATCY	1 cut(s)	480
MluCI	AATT	4 cut(s)	118, 209, 261, 302
MnlI	CCTC	4 cut(s)	49, 150, 416, 428
MseI	TTAA	2 cut(s)	24, 441
Mva1269I	GAATGC	1 cut(s)	116
NdeII	GATC	3 cut(s)	287, 411, 480
NlaIII	CATG	1 cut(s)	355
NmeAIII	GCCGAG	1 cut(s)	126
NmuCI	GTSAC	1 cut(s)	454
PaeR7I	CTCGAG	1 cut(s)	432
PctI	GAATGC	1 cut(s)	116
PfeI	GAWTC	2 cut(s)	337, 375
PkrI	GCNGC	1 cut(s)	61
PshBI	ATTAAT	1 cut(s)	24
PspPI	GGNCC	1 cut(s)	403
PspXI	VCTCGAGB	1 cut(s)	432
PsuI	RGATCY	1 cut(s)	480
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SaqAI	TTAA	2 cut(s)	24, 441
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	3 cut(s)	287, 411, 480
Sau96I	GGNCC	1 cut(s)	403
SetI	ASST	5 cut(s)	238, 245, 334, 396, 496
Sfr274I	CTCGAG	1 cut(s)	432
SlaI	CTCGAG	1 cut(s)	432
SmlI	CTYRAG	1 cut(s)	432
SmoI	CTYRAG	1 cut(s)	432
Sse9I	AATT	4 cut(s)	118, 209, 261, 302
SsiI	CCGC	2 cut(s)	346, 450
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	1 cut(s)	433
TasI	AATT	4 cut(s)	118, 209, 261, 302
TatI	WGTACW	1 cut(s)	354
TfiI	GAWTC	2 cut(s)	337, 375
Tru1I	TTAA	2 cut(s)	24, 441
Tru9I	TTAA	2 cut(s)	24, 441
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	1 cut(s)	204
VspI	ATTAAT	1 cut(s)	24
XhoI	CTCGAG	1 cut(s)	432
XmiI	GTMKAC	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.