Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001276

Physical Location & Seq

Genomic Coordinates Forward (+)

59388674 .. 59391732

Gene Structure 3059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00266000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3027 bp

ATGGGTGTAGCTTCACATGGGAGAAACCTTGCATTTCAGATTGGTAATCCAAAATCAAGGCTTTTGATTCGGGTCCACTACTGCAGTTATAAATCAGAGAGTAAAAAGCAAGAGGATGATGAAACAGTGAGGGAAATCTGTACCATTCTGAAGCGAAGCAGAGAGTGGGAGTCCGTGTTGAGCTCATCAGGGTTTCCCAAGAAGCTAAACCCTCGTGTGGTTCGATCCGTTCTTCAACAACACCACCAGGTTGGTGACCCAGAAAGACTTTTAAGTTTCTTTGATTGGTCTGGTACCCAATTGGGTGTGCTCCCAAATTTGCATTCTTTTTCGATTATGGCTGTTGTTTTGTGTAATTCCAAGCTTTTTGGGCATGCCCATGGTGTGTTGGAGAGAATGGTTAGGACCCGGAAGCCGGCTTTAGAAGTTTTGGATTGTGTTGTTAGGTGTTTTAGAGAGTTTGAGGGTTCTGATATGGATGGGGGTTGGTTTTATGAGGCTGCTGATGTGTTTTTGGGTGTGAGGAGTGTTGGGATTTCGCCCAGATTGGAATGCTGTAATTCTCTGTTGAACGAGTTGTTGAAGGGTAATAGGAAGAGGCTGTTCTGGAAAGTGTATGATGGGATGTTAGAGGCTAAGATTGATCCGGATTTTTACACTTACAGCAATGTGATCAACGCACATTGTAAGTTTGGGGATGTTAGGCAGGGTAAGAGGCTACTGTTTGAGATGGTAGAGAAGGGGTGTAATCCGAATTTGAGTACCTTCAATGTGGTAATTGATGGATTGTGTAGAAGTAGGGCTGTTGATGAAGCCATTGAGTTGAAAAAATCAATGGTTGAGAAGGGATTGACCCCTGATAGGTATACTTATTCAATACTAGTTGATGGATTGTGCAGACAGAAGAGATCAGAAGAAGCAGAGATGGTATTGAACGAGATGTATGATATAGGTTTGAATCCTGACCGCACCTTGTACATTGCTTTGATTGATGGATTCTTGAAAGAAAATAACGTGCATAAGGCCCTGAGGATCAAAGAAGAGATGGTCGCTCGAGGAGTCAAGTTGTGCAGTGTCACATATAATGTGATTTTTGCAGGGATCTGTAAAATAGGTAAGATGGAGAAGGCAGAATCTCTTTTGAATGAGATGAATGCTATGGGAATTGAACCTAATACCCAGACATATAACTATTTAATTGATGGGTACTGTCGGGAGCAAAATGTAAACAAGGCTTATGCATTACTTAATGAGATGAAGCAAAGGAACTTGACACCCAATGAGGTCACTTGTGGAGTGGTAATCAATGGCCTATGCCGGTCTGGAGATCTACAAGGGGCTAATAATGTTTTGAAGGTAATGATCACTGGGGGTTTGAAACCCGGTAGAGTTATCTACACAACTCTAATAAAAGGTCATCTACAAGTAAGAAAATTTGAAGAGGCAATAAAACTATTGAAGGAAATGAGTGAAAAAGGTGTCATTCCTGATGTCTTTTGCTACAATTCTCTTGTAATTGGCCTGTGCAAAGCGAGGAAATTTGAAGAAGCCAACACTTATTTGGTGGAAATGGTTGAGAGAGGATTGAAGCCTAATGCATATACTTATGGGGCTTTTGTTCACGGGTACTGTAAGGAGAGGGAAATGCAACTTGCGAATAGGTATTTCGAGGAGATGCTAGGTTCTGGTATAGCTCCCAATGAGTTTATCTATACAGCACTGATTGAAGGACACTGCAAAGAGGGTAACTTGGTTGAAGCTCTTTCAACATTTAGATCCATGTTGGGACACGGGGTGACCCCAGATATGAAAACATACAGTGTCATTATTCATGGTCTCTCCAGGAAAGGAAAACTTGAAGAAGCAATGGGGATCTTCTCTGAGCTCCTTGGCAAGAATTTGGTTCCGGATGTATTTACATACAGCTCTCTTATATCTGGCTTTTGCAAGCAGGGAAATGCAGAGAAGTCTTTCCAACTTCTTGAACAGATGTCTCAGAGAGGTATTAAACCAAACATTGTCACTTACAACGGCTTGATTAATGGATTGTGCAAGTCTGGGGACATTGACAGAGCCAGAGAAGTGTTTGATGCAATTTCAGGAAAGGGTTTAACTCCTAATGCTGTGACTTATGCTACAATGATGGACGGATATAGCAAATCTGGAAAATTAACTGAGGCTTTACAATTATTAGATGAGATGCAACTCCATGGGATTCCTACTGATAGTTTCATTTACTGCACCCTGATTGATGGGTTCTGCATGGCAGGTGATACAGACAAGGCCTTGTCTTTATTTAATGAAGTGGTGGATAAGGGCCTTGCTGCCACTTCTTCTTTCAATGCATTGATTGATGGCTTCTGTAAATTGGGGAAGCAGATGGAAGCCAAACAGTTGTTTGAAGATATGGTGGATAAGCATGTGACACCAAATCATGTTACGTACACGATTCTGATTGATTCTCTCTGCAAAGAGGGCTTGTTGAGGGAATCAGAAGAGCTATTTCTGGAAATGCAGGAAAGGAATCTGCAGGCCAATATTGTAACCTACACTTCACTTTTGCAGGGCTACAACAGCACAGGAAGCAGAGTAAAGATGTTTGCTCTTTACGAGGAAATTATAGCAAGGGGACTCAAACCTGATGAAATAACCTATGGTCTGATGGTCGAGGCCTATTGCGAAGAAGGTGATGTGGTGAAGTCTCTAAAGCTGGTGGATGAAAGTTTGGTCAATAGTGTTAATTTGAACAGTGATGTGGTAGATGCTCTGGCAAATGCCCTATTCCAAAAGGCAGAATTTTCGAAAGTGATGAAGTCACTTGATGAAATGGGAGAGCAAGGATTTGTGCTCAGTCTTGCAACATGTAAAACATTAGTTCACGGATTTTTCTACAAATCAGGGAATGCAGAGAGGGCAGCAAGGATTCTTGAGATCATGCTCAGGTTTGGATGGGTTTCGGAGTCCACAAGTATAAGCGACTTAATTAATGATGAAGACCAAAATGAGGCAAGCTCTGGGATTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230

Pfam Domains

Protein Families

Mem_trans PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

1008

Amino Acids

112.87

Weight (kDa)

5.97

Isoelectric Point (pI)

27.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	185 - 230	7.3e-08	PPR repeat family
PPR_long	PF17177	200 - 294	1.4e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	207 - 261	3.4e-06	Pentatricopeptide repeat domain
PPR	PF01535	219 - 249	9.6e-06	PPR repeat
PPR_2	PF13041	220 - 265	6.9e-12	PPR repeat family
PPR_1	PF12854	247 - 280	2.6e-09	PPR repeat
PPR_2	PF13041	251 - 300	1.1e-16	PPR repeat family
PPR_1	PF12854	282 - 314	2.6e-10	PPR repeat
PPR_3	PF13812	344 - 403	1.1e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	357 - 405	3.1e-17	PPR repeat family
PPR_long	PF17177	370 - 430	9e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	387 - 420	3.4e-12	PPR repeat
PPR_2	PF13041	391 - 440	7.6e-18	PPR repeat family
PPR	PF01535	395 - 423	8.8e-07	PPR repeat
PPR_3	PF13812	458 - 509	5.4e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	461 - 510	1.9e-14	PPR repeat family
PPR	PF01535	464 - 494	1.1e-06	PPR repeat
PPR_1	PF12854	492 - 524	3.3e-06	PPR repeat
PPR_2	PF13041	496 - 545	1.4e-13	PPR repeat family
PPR_3	PF13812	522 - 575	8.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	527 - 559	1.9e-06	PPR repeat
PPR_long	PF17177	550 - 663	1.4e-11	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	563 - 594	4.5e-08	PPR repeat
PPR_2	PF13041	566 - 614	1.6e-13	PPR repeat family
PPR	PF01535	570 - 599	3.4e-06	PPR repeat
PPR_1	PF12854	598 - 628	2.2e-06	PPR repeat
PPR_2	PF13041	609 - 650	1.5e-11	PPR repeat family
PPR_long	PF17177	625 - 730	5.7e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	625 - 681	9.6e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	632 - 665	2.7e-12	PPR repeat
PPR	PF01535	639 - 669	2.4e-07	PPR repeat
PPR_2	PF13041	643 - 685	8.2e-15	PPR repeat family
PPR_long	PF17177	653 - 771	2.5e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	660 - 718	1.4e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	667 - 697	9.9e-13	PPR repeat
PPR_2	PF13041	671 - 720	8.1e-15	PPR repeat family
PPR	PF01535	674 - 703	2e-06	PPR repeat
PPR_1	PF12854	702 - 735	5.3e-10	PPR repeat
PPR_2	PF13041	706 - 754	1.7e-13	PPR repeat family
PPR	PF01535	709 - 739	9.1e-08	PPR repeat
PPR_1	PF12854	738 - 768	7.1e-08	PPR repeat
PPR	PF01535	745 - 774	1.3e-06	PPR repeat
PPR_3	PF13812	765 - 820	6.3e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	777 - 824	4.9e-16	PPR repeat family
PPR_1	PF12854	779 - 804	1.4e-06	PPR repeat
PPR_long	PF17177	794 - 958	1.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	807 - 838	1.1e-10	PPR repeat
PPR	PF01535	813 - 842	1.9e-08	PPR repeat
PPR_2	PF13041	813 - 857	3e-12	PPR repeat family
PPR_3	PF13812	834 - 892	5.8e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	846 - 893	4.9e-09	PPR repeat family
PPR_1	PF12854	876 - 907	2e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61990
fragaria_vesca	FvH4_5g09340 FvH4_5g09340 FvH4_5g09340 FvH4_5g09340
malus_domestica	MD06G1131900.v1.1 MD14G1148300.v1.1
prunus_persica	Prupe.5G142900_v2.0.a1 Prupe.5G142900_v2.0.a1
pyrus_communis	pycom06g12350 pycom14g12300
rosa_chinensis	RchiOBHm_Chr1g0325241 RchiOBHm_Chr1g0325261 RchiOBHm_Chr2g0162681 RchiOBHm_Chr7g0188811 RchiOBHm_Chr7g0229441
rosa_laevigata	RLG00000004657 RLG00000028121 RLG00000028122 RLG00000031426 RLG00000035825
rosa_multiflora	Rmu_sc0001621.1_g000013 Rmu_sc0001918.1_g000006 Rmu_sc0004279.1_g000018 Rmu_sc0034360.1_g000001 Rmu_sc0034361.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266000 Rroxscaffold_5G00381140
rosa_rugosa	Rorug02G0360500 Rorug05G0369000 Rorug06G0494100 Rorug07G0156300
rosa_samantha	Rh1BG033100 Rh2CG348200 Rh2CG348300 Rh4AG001800 Rh4AG163800 Rh4BG001600 Rh4BG400000 Rh4BG400100 Rh4CG415000 Rh4CG415100 Rh6DG332400 Rh6DG332500 Rh7AG098900 Rh7AG408500 Rh7BG100600 Rh7CG102100 Rh7CG477400 Rh7DG100700 Rh7DG406300 Rh7DG406400 Rh7DG446700
rosa_wichuraiana	Rw0G022150 Rw7G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
AarI	CACCTGC	1 cut(s)	2258
Acc36I	ACCTGC	1 cut(s)	2258
Acc65I	GGTACC	1 cut(s)	293
AccB1I	GGYRCC	1 cut(s)	293
AccI	GTMKAC	1 cut(s)	866
AccIII	TCCGGA	2 cut(s)	646, 1906
AciI	CCGC	1 cut(s)	967
AclWI	GGATC	6 cut(s)	219, 638, 1040, 1109, 1770, 1880
AcsI	RAATTY	6 cut(s)	316, 754, 1433, 1538, 1897, 2795
AcuI	CTGAAG	1 cut(s)	170
AdeI	CACNNNGTG	1 cut(s)	1795
AfaI	GTAC	7 cut(s)	142, 295, 763, 977, 1208, 1628, 2444
AfiI	CCNNNNNNNGG	4 cut(s)	217, 415, 861, 3004
AflIII	ACRYGT	1 cut(s)	2861
AhlI	ACTAGT	1 cut(s)	880
AjnI	CCWGG	2 cut(s)	246, 1841
AjuI	GAANNNNNNNTTGG	2 cut(s)	307, 339
Alw21I	GWGCWC	4 cut(s)	185, 312, 1887, 2850
Alw26I	GTCTC	3 cut(s)	1841, 1998, 2706
AlwI	GGATC	6 cut(s)	219, 638, 1040, 1109, 1770, 1880
Ama87I	CYCGRG	1 cut(s)	1053
Aor13HI	TCCGGA	2 cut(s)	646, 1906
AoxI	GGCC	7 cut(s)	1023, 1309, 1519, 2283, 2317, 2532, 2670
ApeKI	GCWGC	3 cut(s)	500, 2324, 2915
ApoI	RAATTY	6 cut(s)	316, 754, 1433, 1538, 1897, 2795
AseI	ATTAAT	2 cut(s)	2040, 2985
Asp700I	GAANNNNTTC	1 cut(s)	1970
Asp718I	GGTACC	1 cut(s)	293
AspS9I	GGNCC	4 cut(s)	73, 405, 1024, 2317
AsuC2I	CCSGG	2 cut(s)	409, 1383
AsuHPI	GGTGA	5 cut(s)	266, 1807, 2282, 2699, 2707
AsuII	TTCGAA	1 cut(s)	2801
AvaI	CYCGRG	1 cut(s)	1053
AvaII	GGWCC	2 cut(s)	73, 405
AxyI	CCTNAGG	1 cut(s)	1028
BanI	GGYRCC	1 cut(s)	293
BanII	GRGCYC	2 cut(s)	185, 1887
BauI	CACGAG	1 cut(s)	213
BbsI	GAAGAC	1 cut(s)	3000
Bbv12I	GWGCWC	4 cut(s)	185, 312, 1887, 2850
BbvI	GCAGC	3 cut(s)	487, 2311, 2927
BceAI	ACGGC	1 cut(s)	2047
BcgI	CGANNNNNNTGC	2 cut(s)	2781, 2815
BciT130I	CCWGG	2 cut(s)	248, 1843
BclI	TGATCA	2 cut(s)	672, 1362
BcnI	CCSGG	2 cut(s)	409, 1383
BcoDI	GTCTC	3 cut(s)	1841, 1998, 2706
BcuI	ACTAGT	1 cut(s)	880
BfaI	CTAG	2 cut(s)	881, 1679
BfmI	CTRYAG	2 cut(s)	82, 2528
BfuAI	ACCTGC	1 cut(s)	2258
BglII	AGATCT	1 cut(s)	1327
BisI	GCNGC	3 cut(s)	501, 2325, 2916
BlsI	GCNGC	3 cut(s)	502, 2326, 2917
Bme1390I	CCNGG	4 cut(s)	248, 409, 1383, 1843
Bme18I	GGWCC	2 cut(s)	73, 405
BmeT110I	CYCGRG	1 cut(s)	1053
BmgT120I	GGNCC	4 cut(s)	73, 405, 1024, 2317
BmiI	GGNNCC	4 cut(s)	74, 295, 407, 1905
BmrFI	CCNGG	4 cut(s)	248, 409, 1383, 1843
BmrI	ACTGGG	1 cut(s)	1377
BmsI	GCATC	4 cut(s)	1665, 2080, 2190, 2752
BmuI	ACTGGG	1 cut(s)	1377
BpiI	GAAGAC	1 cut(s)	3000
BplI	GAGNNNNNCTC	1 cut(s)	2996
BpmI	CTGGAG	2 cut(s)	1344, 1825
Bpu10I	CCTNAGC	1 cut(s)	2939
Bpu14I	TTCGAA	1 cut(s)	2801
BpuEI	CTTGAG	1 cut(s)	2948
BpuMI	CCSGG	2 cut(s)	409, 1383
BsaAI	YACGTR	1 cut(s)	2442
BsaI	GGTCTC	1 cut(s)	1841
BsaJI	CCNNGG	3 cut(s)	379, 1888, 2209
BsaWI	WCCGGW	2 cut(s)	646, 1906
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	4 cut(s)	217, 415, 861, 3004
Bse118I	RCCGGY	2 cut(s)	415, 1317
Bse1I	ACTGG	1 cut(s)	1372
Bse21I	CCTNAGG	1 cut(s)	1028
Bse3DI	GCAATG	3 cut(s)	673, 978, 1872
BseAI	TCCGGA	2 cut(s)	646, 1906
BseBI	CCWGG	2 cut(s)	248, 1843
BseDI	CCNNGG	3 cut(s)	379, 1888, 2209
BseGI	GGATG	7 cut(s)	121, 484, 630, 703, 1915, 2722, 2954
BseLI	CCNNNNNNNGG	4 cut(s)	217, 415, 861, 3004
BseMI	GCAATG	3 cut(s)	673, 978, 1872
BseMII	CTCAG	6 cut(s)	1019, 1872, 2009, 2166, 2863, 2953
BseNI	ACTGG	1 cut(s)	1372
BseRI	GAGGAG	3 cut(s)	538, 1071, 1685
BseXI	GCAGC	3 cut(s)	487, 2311, 2927
BsgI	GTGCAG	3 cut(s)	916, 1090, 2224
BshFI	GGCC	7 cut(s)	1025, 1311, 1521, 2285, 2319, 2534, 2672
BshNI	GGYRCC	1 cut(s)	293
BsiHKAI	GWGCWC	4 cut(s)	185, 312, 1887, 2850
BsiHKCI	CYCGRG	1 cut(s)	1053
BsiSI	CCGG	6 cut(s)	409, 416, 647, 1318, 1383, 1907
BslFI	GGGAC	3 cut(s)	1800, 2075, 2643
BslI	CCNNNNNNNGG	4 cut(s)	217, 415, 861, 3004
BsmAI	GTCTC	3 cut(s)	1841, 1998, 2706
BsmFI	GGGAC	3 cut(s)	1800, 2075, 2643
BsmI	GAATGC	4 cut(s)	322, 557, 1159, 2908
BsnI	GGCC	7 cut(s)	1025, 1311, 1521, 2285, 2319, 2534, 2672
Bso31I	GGTCTC	1 cut(s)	1841
BsoBI	CYCGRG	1 cut(s)	1053
Bsp119I	TTCGAA	1 cut(s)	2801
Bsp1286I	GDGCHC	4 cut(s)	185, 312, 1887, 2850
Bsp13I	TCCGGA	2 cut(s)	646, 1906
Bsp1407I	TGTACA	1 cut(s)	975
Bsp19I	CCATGG	2 cut(s)	379, 2209
BspACI	CCGC	1 cut(s)	967
BspANI	GGCC	7 cut(s)	1025, 1311, 1521, 2285, 2319, 2534, 2672
BspCNI	CTCAG	6 cut(s)	1020, 1873, 2008, 2167, 2862, 2952
BspEI	TCCGGA	2 cut(s)	646, 1906
BspLI	GGNNCC	4 cut(s)	74, 295, 407, 1905
BspMAI	CTGCAG	2 cut(s)	86, 2532
BspMI	ACCTGC	1 cut(s)	2258
BspPI	GGATC	6 cut(s)	219, 638, 1040, 1109, 1770, 1880
BspQI	GCTCTTC	1 cut(s)	2490
BspT104I	TTCGAA	1 cut(s)	2801
BspT107I	GGYRCC	1 cut(s)	293
BspTNI	GGTCTC	1 cut(s)	1841
BsrDI	GCAATG	3 cut(s)	673, 978, 1872
BsrFI	RCCGGY	2 cut(s)	415, 1317
BsrGI	TGTACA	1 cut(s)	975
BsrI	ACTGG	1 cut(s)	1372
BssAI	RCCGGY	2 cut(s)	415, 1317
BssECI	CCNNGG	3 cut(s)	379, 1888, 2209
BssNAI	GTATAC	1 cut(s)	867
BssSI	CACGAG	1 cut(s)	213
BssT1I	CCWWGG	3 cut(s)	379, 1888, 2209
Bst1107I	GTATAC	1 cut(s)	867
Bst2BI	CACGAG	1 cut(s)	213
Bst2UI	CCWGG	2 cut(s)	248, 1843
Bst4CI	ACNGT	7 cut(s)	127, 723, 1211, 1631, 1820, 2394, 2750
Bst6I	CTCTTC	5 cut(s)	590, 899, 1035, 1434, 2490
BstAUI	TGTACA	1 cut(s)	975
BstBAI	YACGTR	1 cut(s)	2442
BstBI	TTCGAA	1 cut(s)	2801
BstC8I	GCNNGC	5 cut(s)	375, 417, 1949, 2532, 3010
BstDEI	CTNAG	7 cut(s)	636, 1028, 1881, 1995, 2175, 2849, 2939
BstDSI	CCRYGG	2 cut(s)	379, 2209
BstEII	GGTNACC	2 cut(s)	254, 1795
BstF5I	GGATG	7 cut(s)	121, 484, 630, 703, 1915, 2722, 2954
BstMAI	GTCTC	3 cut(s)	1841, 1998, 2706
BstMWI	GCNNNNNNNGC	5 cut(s)	370, 2475, 2574, 2583, 2912
BstNI	CCWGG	2 cut(s)	248, 1843
BstNSI	RCATGY	3 cut(s)	377, 2423, 2865
BstPI	GGTNACC	2 cut(s)	254, 1795
BstSCI	CCNGG	4 cut(s)	246, 407, 1381, 1841
BstSFI	CTRYAG	2 cut(s)	82, 2528
BstSNI	TACGTA	1 cut(s)	2442
BstV1I	GCAGC	3 cut(s)	487, 2311, 2927
BstV2I	GAAGAC	1 cut(s)	3000
BstX2I	RGATCY	4 cut(s)	1101, 1327, 1775, 1872
BstXI	CCANNNNNNTGG	1 cut(s)	251
BstYI	RGATCY	4 cut(s)	1101, 1327, 1775, 1872
BstZ17I	GTATAC	1 cut(s)	867
Bsu36I	CCTNAGG	1 cut(s)	1028
BsuRI	GGCC	7 cut(s)	1025, 1311, 1521, 2285, 2319, 2534, 2672
BtgI	CCRYGG	2 cut(s)	379, 2209
BtsCI	GGATG	7 cut(s)	121, 484, 630, 703, 1915, 2722, 2954
BtsI	GCAGTG	2 cut(s)	1078, 1732
BtsIMutI	CAGTG	7 cut(s)	132, 1078, 1365, 1718, 1732, 1825, 2755
BveI	ACCTGC	1 cut(s)	2258
Cac8I	GCNNGC	5 cut(s)	375, 417, 1949, 2532, 3010
Cfr10I	RCCGGY	2 cut(s)	415, 1317
Cfr13I	GGNCC	4 cut(s)	73, 405, 1024, 2317
CsiI	ACCWGGT	1 cut(s)	246
Csp6I	GTAC	7 cut(s)	141, 294, 762, 976, 1207, 1627, 2443
CviQI	GTAC	7 cut(s)	141, 294, 762, 976, 1207, 1627, 2443
DdeI	CTNAG	7 cut(s)	636, 1028, 1881, 1995, 2175, 2849, 2939
DraIII	CACNNNGTG	1 cut(s)	1795
Eam1104I	CTCTTC	5 cut(s)	590, 899, 1035, 1434, 2490
EarI	CTCTTC	5 cut(s)	590, 899, 1035, 1434, 2490
Ecl136II	GAGCTC	2 cut(s)	183, 1885
Eco105I	TACGTA	1 cut(s)	2442
Eco130I	CCWWGG	3 cut(s)	379, 1888, 2209
Eco147I	AGGCCT	2 cut(s)	2285, 2672
Eco24I	GRGCYC	2 cut(s)	185, 1887
Eco31I	GGTCTC	1 cut(s)	1841
Eco47I	GGWCC	2 cut(s)	73, 405
Eco53kI	GAGCTC	2 cut(s)	183, 1885
Eco57I	CTGAAG	1 cut(s)	170
Eco81I	CCTNAGG	1 cut(s)	1028
Eco88I	CYCGRG	1 cut(s)	1053
Eco91I	GGTNACC	2 cut(s)	254, 1795
EcoICRI	GAGCTC	2 cut(s)	183, 1885
EcoO109I	RGGNCCY	3 cut(s)	405, 1024, 2317
EcoO65I	GGTNACC	2 cut(s)	254, 1795
EcoRII	CCWGG	2 cut(s)	246, 1841
EcoT14I	CCWWGG	3 cut(s)	379, 1888, 2209
EcoT22I	ATGCAT	3 cut(s)	1243, 1600, 2347
EcoT38I	GRGCYC	2 cut(s)	185, 1887
ErhI	CCWWGG	3 cut(s)	379, 1888, 2209
FalI	AAGNNNNNCTT	2 cut(s)	1839, 1871
FaqI	GGGAC	3 cut(s)	1800, 2075, 2643
FbaI	TGATCA	2 cut(s)	672, 1362
FblI	GTMKAC	1 cut(s)	866
Fnu4HI	GCNGC	3 cut(s)	501, 2325, 2916
FokI	GGATG	7 cut(s)	128, 491, 637, 710, 1922, 2729, 2961
FriOI	GRGCYC	2 cut(s)	185, 1887
Fsp4HI	GCNGC	3 cut(s)	501, 2325, 2916
FspBI	CTAG	2 cut(s)	881, 1679
GluI	GCNGC	3 cut(s)	501, 2325, 2916
GsuI	CTGGAG	2 cut(s)	1344, 1825
HaeIII	GGCC	7 cut(s)	1025, 1311, 1521, 2285, 2319, 2534, 2672
HapII	CCGG	6 cut(s)	409, 416, 647, 1318, 1383, 1907
HindIII	AAGCTT	1 cut(s)	362
HpaII	CCGG	6 cut(s)	409, 416, 647, 1318, 1383, 1907
HphI	GGTGA	5 cut(s)	266, 1807, 2282, 2699, 2707
Hpy166II	GTNNAC	7 cut(s)	76, 867, 1228, 1621, 2445, 2878, 2964
Hpy8I	GTNNAC	7 cut(s)	76, 867, 1228, 1621, 2445, 2878, 2964
HpyAV	CCTTC	9 cut(s)	577, 733, 775, 838, 1120, 1348, 1453, 1721, 2678
HpyCH4III	ACNGT	7 cut(s)	127, 723, 1211, 1631, 1820, 2394, 2750
HpyCH4IV	ACGT	2 cut(s)	1014, 2441
HpyF10VI	GCNNNNNNNGC	5 cut(s)	370, 2475, 2574, 2583, 2912
HpyF3I	CTNAG	7 cut(s)	636, 1028, 1881, 1995, 2175, 2849, 2939
HpySE526I	ACGT	2 cut(s)	1014, 2441
Kpn2I	TCCGGA	2 cut(s)	646, 1906
KpnI	GGTACC	1 cut(s)	297
KroI	GCCGGC	1 cut(s)	415
KroNI	GCCGGC	1 cut(s)	417
Ksp22I	TGATCA	2 cut(s)	672, 1362
LguI	GCTCTTC	1 cut(s)	2490
LmnI	GCTCC	4 cut(s)	315, 1216, 1699, 1890
Lsp1109I	GCAGC	3 cut(s)	487, 2311, 2927
LweI	GCATC	4 cut(s)	1665, 2080, 2190, 2752
MabI	ACCWGGT	1 cut(s)	246
MaeI	CTAG	2 cut(s)	881, 1679
MaeII	ACGT	2 cut(s)	1014, 2441
MfeI	CAATTG	1 cut(s)	299
MflI	RGATCY	4 cut(s)	1101, 1327, 1775, 1872
MhlI	GDGCHC	4 cut(s)	185, 312, 1887, 2850
MlyI	GAGTC	4 cut(s)	179, 1068, 2625, 2969
MmeI	TCCRAC	2 cut(s)	369, 1999
Mph1103I	ATGCAT	3 cut(s)	1243, 1600, 2347
MroI	TCCGGA	2 cut(s)	646, 1906
MroNI	GCCGGC	1 cut(s)	415
MroXI	GAANNNNTTC	1 cut(s)	1970
MslI	CAYNNNNRTG	1 cut(s)	378
MspI	CCGG	6 cut(s)	409, 416, 647, 1318, 1383, 1907
MspR9I	CCNGG	4 cut(s)	248, 409, 1383, 1843
MunI	CAATTG	1 cut(s)	299
Mva1269I	GAATGC	4 cut(s)	322, 557, 1159, 2908
MvaI	CCWGG	2 cut(s)	248, 1843
MwoI	GCNNNNNNNGC	5 cut(s)	370, 2475, 2574, 2583, 2912
NaeI	GCCGGC	1 cut(s)	417
NciI	CCSGG	2 cut(s)	409, 1383
NcoI	CCATGG	2 cut(s)	379, 2209
NgoMIV	GCCGGC	1 cut(s)	415
NlaIV	GGNNCC	4 cut(s)	74, 295, 407, 1905
NmuCI	GTSAC	8 cut(s)	254, 1075, 1285, 1795, 2020, 2125, 2422, 2814
NsiI	ATGCAT	3 cut(s)	1243, 1600, 2347
NspI	RCATGY	3 cut(s)	377, 2423, 2865
NspV	TTCGAA	1 cut(s)	2801
PacI	TTAATTAA	1 cut(s)	2985
PaeI	GCATGC	1 cut(s)	377
PaeR7I	CTCGAG	1 cut(s)	1053
PaqCI	CACCTGC	1 cut(s)	2258
PceI	AGGCCT	2 cut(s)	2285, 2672
PciI	ACATGT	1 cut(s)	2861
PciSI	GCTCTTC	1 cut(s)	2490
PcsI	WCGNNNNNNNCGW	1 cut(s)	220
PctI	GAATGC	4 cut(s)	322, 557, 1159, 2908
PdiI	GCCGGC	1 cut(s)	417
PdmI	GAANNNNTTC	1 cut(s)	1970
PfoI	TCCNGGA	1 cut(s)	1841
PkrI	GCNGC	3 cut(s)	502, 2326, 2917
PleI	GAGTC	4 cut(s)	178, 1067, 2625, 2968
PpsI	GAGTC	4 cut(s)	178, 1067, 2625, 2968
Ppu21I	YACGTR	1 cut(s)	2442
PpuMI	RGGWCCY	1 cut(s)	405
PscI	ACATGT	1 cut(s)	2861
PshBI	ATTAAT	2 cut(s)	2040, 2985
PsiI	TTATAA	1 cut(s)	90
Psp124BI	GAGCTC	2 cut(s)	185, 1887
Psp5II	RGGWCCY	1 cut(s)	405
Psp6I	CCWGG	2 cut(s)	246, 1841
PspEI	GGTNACC	2 cut(s)	254, 1795
PspGI	CCWGG	2 cut(s)	246, 1841
PspN4I	GGNNCC	4 cut(s)	74, 295, 407, 1905
PspPI	GGNCC	4 cut(s)	73, 405, 1024, 2317
PspPPI	RGGWCCY	1 cut(s)	405
PspXI	VCTCGAGB	1 cut(s)	1053
PstI	CTGCAG	2 cut(s)	86, 2532
PsuI	RGATCY	4 cut(s)	1101, 1327, 1775, 1872
RsaI	GTAC	7 cut(s)	142, 295, 763, 977, 1208, 1628, 2444
RsaNI	GTAC	7 cut(s)	141, 294, 762, 976, 1207, 1627, 2443
RseI	CAYNNNNRTG	1 cut(s)	378
SacI	GAGCTC	2 cut(s)	185, 1887
SapI	GCTCTTC	1 cut(s)	2490
SatI	GCNGC	3 cut(s)	501, 2325, 2916
Sau96I	GGNCC	4 cut(s)	73, 405, 1024, 2317
SchI	GAGTC	4 cut(s)	179, 1068, 2625, 2969
ScrFI	CCNGG	4 cut(s)	248, 409, 1383, 1843
SduI	GDGCHC	4 cut(s)	185, 312, 1887, 2850
SexAI	ACCWGGT	1 cut(s)	246
SfaNI	GCATC	4 cut(s)	1665, 2080, 2190, 2752
SfcI	CTRYAG	2 cut(s)	82, 2528
Sfr274I	CTCGAG	1 cut(s)	1053
SfuI	TTCGAA	1 cut(s)	2801
SinI	GGWCC	2 cut(s)	73, 405
SlaI	CTCGAG	1 cut(s)	1053
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	2 cut(s)	1053, 2927
SmoI	CTYRAG	2 cut(s)	1053, 2927
SnaBI	TACGTA	1 cut(s)	2442
SpeI	ACTAGT	1 cut(s)	880
SphI	GCATGC	1 cut(s)	377
SseBI	AGGCCT	2 cut(s)	2285, 2672
SsiI	CCGC	1 cut(s)	967
SspI	AATATT	1 cut(s)	2539
SspMI	CTAG	2 cut(s)	881, 1679
SstI	GAGCTC	2 cut(s)	185, 1887
StuI	AGGCCT	2 cut(s)	2285, 2672
StyD4I	CCNGG	4 cut(s)	246, 407, 1381, 1841
StyI	CCWWGG	3 cut(s)	379, 1888, 2209
TaaI	ACNGT	7 cut(s)	127, 723, 1211, 1631, 1820, 2394, 2750
TaiI	ACGT	2 cut(s)	1017, 2444
TaqI	TCGA	6 cut(s)	223, 332, 1054, 1668, 2667, 2801
TatI	WGTACW	1 cut(s)	975
TscAI	CASTG	7 cut(s)	132, 1078, 1372, 1725, 1739, 1825, 2755
TseFI	GTSAC	8 cut(s)	254, 1075, 1285, 1795, 2020, 2125, 2422, 2814
TseI	GCWGC	3 cut(s)	500, 2324, 2915
Tsp45I	GTSAC	8 cut(s)	254, 1075, 1285, 1795, 2020, 2125, 2422, 2814
TspGWI	ACGGA	4 cut(s)	163, 217, 2163, 2895
TspRI	CASTG	7 cut(s)	132, 1078, 1372, 1725, 1739, 1825, 2755
VpaK11BI	GGWCC	2 cut(s)	73, 405
VspI	ATTAAT	2 cut(s)	2040, 2985
XapI	RAATTY	6 cut(s)	316, 754, 1433, 1538, 1897, 2795
XceI	RCATGY	3 cut(s)	377, 2423, 2865
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1558
XhoI	CTCGAG	1 cut(s)	1053
XmiI	GTMKAC	1 cut(s)	866
XmnI	GAANNNNTTC	1 cut(s)	1970
XspI	CTAG	2 cut(s)	881, 1679
Zsp2I	ATGCAT	3 cut(s)	1243, 1600, 2347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.