Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001918.1

Orthogroup ID

OG0001276

Physical Location & Seq

Genomic Coordinates Reverse (-)

18318 .. 18848

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001918.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atggctgttgttttgtgtaattccaagctttttgggcatgcccatggtgtgttggagagaatagttaggacccagaagccggctttagaagttttggattgtgttgttaggtgctttagagagtttgaggggtctgatatggtggtttttgagattttgattaatgtgtttacgatggggggttggttttatgaggctgctgatgtgtttttgggtgttaggagtgttgggatttcaccgagattggaatgctgtaattctctgttaaatgacttgttgaagggtaataggatgaggctgttctggaaaatgtatgatgggatgttagaggctaagattgagctagatttttacacttatagtaatgtgatcaatgcacaatattgtaagtttggggatgttaggcagggtaagaggctactgtttgagatggttgatggattgtgtagaagtagggctgttgatgaagccattgagttgaaaaaatcgatggttgagaagggattgacacctgataggtatacatattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230

Pfam Domains

Protein Families

Mem_trans PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

176

Amino Acids

20.24

Weight (kDa)

6.73

Isoelectric Point (pI)

28.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61990
fragaria_vesca	FvH4_5g09340 FvH4_5g09340 FvH4_5g09340 FvH4_5g09340
malus_domestica	MD06G1131900.v1.1 MD14G1148300.v1.1
prunus_persica	Prupe.5G142900_v2.0.a1 Prupe.5G142900_v2.0.a1
pyrus_communis	pycom06g12350 pycom14g12300
rosa_chinensis	RchiOBHm_Chr1g0325241 RchiOBHm_Chr1g0325261 RchiOBHm_Chr2g0162681 RchiOBHm_Chr7g0188811 RchiOBHm_Chr7g0229441
rosa_laevigata	RLG00000004657 RLG00000028121 RLG00000028122 RLG00000031426 RLG00000035825
rosa_multiflora	Rmu_sc0001621.1_g000013 Rmu_sc0001918.1_g000006 Rmu_sc0004279.1_g000018 Rmu_sc0034360.1_g000001 Rmu_sc0034361.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266000 Rroxscaffold_5G00381140
rosa_rugosa	Rorug02G0360500 Rorug05G0369000 Rorug06G0494100 Rorug07G0156300
rosa_samantha	Rh1BG033100 Rh2CG348200 Rh2CG348300 Rh4AG001800 Rh4AG163800 Rh4BG001600 Rh4BG400000 Rh4BG400100 Rh4CG415000 Rh4CG415100 Rh6DG332400 Rh6DG332500 Rh7AG098900 Rh7AG408500 Rh7BG100600 Rh7CG102100 Rh7CG477400 Rh7DG100700 Rh7DG406300 Rh7DG406400 Rh7DG446700
rosa_wichuraiana	Rw0G022150 Rw7G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	521
AfiI	CCNNNNNNNGG	1 cut(s)	79
AgsI	TTSAA	2 cut(s)	280, 481
AluBI	AGCT	2 cut(s)	28, 343
AluI	AGCT	2 cut(s)	28, 343
ApeKI	GCWGC	1 cut(s)	197
AseI	ATTAAT	1 cut(s)	162
AspS9I	GGNCC	1 cut(s)	69
AsuHPI	GGTGA	1 cut(s)	228
AvaII	GGWCC	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	5 cut(s)	169, 311, 424, 431, 484
BclI	TGATCA	1 cut(s)	369
BfaI	CTAG	1 cut(s)	344
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	71
Bsa29I	ATCGAT	1 cut(s)	488
BsaJI	CCNNGG	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
Bse118I	RCCGGY	1 cut(s)	79
BseCI	ATCGAT	1 cut(s)	488
BseDI	CCNNGG	1 cut(s)	43
BseGI	GGATG	3 cut(s)	297, 327, 403
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseXI	GCAGC	1 cut(s)	184
BshVI	ATCGAT	1 cut(s)	488
BsiSI	CCGG	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmI	GAATGC	1 cut(s)	254
Bsp143I	GATC	1 cut(s)	369
Bsp19I	CCATGG	1 cut(s)	43
BspDI	ATCGAT	1 cut(s)	488
BspLI	GGNNCC	1 cut(s)	71
BsrFI	RCCGGY	1 cut(s)	79
BssAI	RCCGGY	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	43
BssMI	GATC	1 cut(s)	369
BssNAI	GTATAC	1 cut(s)	522
BssT1I	CCWWGG	1 cut(s)	43
Bst1107I	GTATAC	1 cut(s)	522
Bst4CI	ACNGT	1 cut(s)	423
BstC8I	GCNNGC	2 cut(s)	39, 81
BstDEI	CTNAG	1 cut(s)	333
BstDSI	CCRYGG	1 cut(s)	43
BstF5I	GGATG	3 cut(s)	297, 327, 403
BstKTI	GATC	1 cut(s)	372
BstMBI	GATC	1 cut(s)	369
BstMWI	GCNNNNNNNGC	1 cut(s)	34
BstNSI	RCATGY	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	184
BstZ17I	GTATAC	1 cut(s)	522
Bsu15I	ATCGAT	1 cut(s)	488
BsuTUI	ATCGAT	1 cut(s)	488
BtgI	CCRYGG	1 cut(s)	43
BtsCI	GGATG	3 cut(s)	297, 327, 403
Cac8I	GCNNGC	2 cut(s)	39, 81
Cfr10I	RCCGGY	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	69
ClaI	ATCGAT	1 cut(s)	488
CviAII	CATG	2 cut(s)	38, 44
DdeI	CTNAG	1 cut(s)	333
DpnI	GATC	1 cut(s)	371
DpnII	GATC	1 cut(s)	369
Eco130I	CCWWGG	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	69
EcoO109I	RGGNCCY	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	43
ErhI	CCWWGG	1 cut(s)	43
FaeI	CATG	2 cut(s)	41, 47
FaiI	YATR	8 cut(s)	39, 45, 140, 192, 315, 360, 522, 526
FatI	CATG	2 cut(s)	37, 43
FbaI	TGATCA	1 cut(s)	369
FblI	GTMKAC	1 cut(s)	521
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	3 cut(s)	304, 334, 410
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	344
GluI	GCNGC	1 cut(s)	198
HapII	CCGG	1 cut(s)	80
Hin1II	CATG	2 cut(s)	41, 47
HindIII	AAGCTT	1 cut(s)	26
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	1 cut(s)	228
Hpy166II	GTNNAC	2 cut(s)	171, 522
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	1 cut(s)	304
Hpy8I	GTNNAC	2 cut(s)	171, 522
HpyAV	CCTTC	2 cut(s)	274, 493
HpyCH4III	ACNGT	1 cut(s)	423
HpyCH4V	TGCA	1 cut(s)	377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	34
HpyF3I	CTNAG	1 cut(s)	333
Hsp92II	CATG	2 cut(s)	41, 47
KroI	GCCGGC	1 cut(s)	79
KroNI	GCCGGC	1 cut(s)	81
Ksp22I	TGATCA	1 cut(s)	369
Kzo9I	GATC	1 cut(s)	369
LpnPI	CCDG	5 cut(s)	86, 93, 289, 392, 525
Lsp1109I	GCAGC	1 cut(s)	184
MaeI	CTAG	1 cut(s)	344
MalI	GATC	1 cut(s)	371
MboI	GATC	1 cut(s)	369
MluCI	AATT	2 cut(s)	19, 256
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	5 cut(s)	121, 187, 288, 322, 408
MroNI	GCCGGC	1 cut(s)	79
MseI	TTAA	3 cut(s)	162, 266, 529
MslI	CAYNNNNRTG	1 cut(s)	42
MspI	CCGG	1 cut(s)	80
Mva1269I	GAATGC	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	34
NaeI	GCCGGC	1 cut(s)	81
NcoI	CCATGG	1 cut(s)	43
NdeII	GATC	1 cut(s)	369
NgoMIV	GCCGGC	1 cut(s)	79
NlaIII	CATG	2 cut(s)	41, 47
NlaIV	GGNNCC	1 cut(s)	71
NspI	RCATGY	1 cut(s)	41
PaeI	GCATGC	1 cut(s)	41
PctI	GAATGC	1 cut(s)	254
PdiI	GCCGGC	1 cut(s)	81
PkrI	GCNGC	1 cut(s)	199
PpuMI	RGGWCCY	1 cut(s)	69
PshBI	ATTAAT	1 cut(s)	162
Psp5II	RGGWCCY	1 cut(s)	69
PspN4I	GGNNCC	1 cut(s)	71
PspPI	GGNCC	1 cut(s)	69
PspPPI	RGGWCCY	1 cut(s)	69
RseI	CAYNNNNRTG	1 cut(s)	42
SaqAI	TTAA	3 cut(s)	162, 266, 529
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	1 cut(s)	369
Sau96I	GGNCC	1 cut(s)	69
SetI	ASST	5 cut(s)	30, 113, 345, 514, 521
SinI	GGWCC	1 cut(s)	69
SmiMI	CAYNNNNRTG	1 cut(s)	42
SphI	GCATGC	1 cut(s)	41
Sse9I	AATT	2 cut(s)	19, 256
SspI	AATATT	1 cut(s)	383
SspMI	CTAG	1 cut(s)	344
StyI	CCWWGG	1 cut(s)	43
TaaI	ACNGT	1 cut(s)	423
TaqI	TCGA	1 cut(s)	488
TasI	AATT	2 cut(s)	19, 256
Tru1I	TTAA	3 cut(s)	162, 266, 529
Tru9I	TTAA	3 cut(s)	162, 266, 529
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	1 cut(s)	480
VpaK11BI	GGWCC	1 cut(s)	69
VspI	ATTAAT	1 cut(s)	162
XceI	RCATGY	1 cut(s)	41
XmiI	GTMKAC	1 cut(s)	521
XspI	CTAG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.