Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001276

Physical Location & Seq

Genomic Coordinates Reverse (-)

13221288 .. 13223557

Gene Structure 2270 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55499

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGGTTTAGCTTCACATGGGAGAAACCTTGCATTTCAGATTGGTAATCCAAAACCAAGGCTTTTGATTCGGGTCCACTACTGCAGTTATAAATCAGAGAGTAAAAAGCAAGAGGATGATGAAACAGTGAGGGAAATCTGTACCATTCTGAAGCGAAGCAGAGAGTGGGAGTCCGTGTTGAGCTCATCAGGGTTTCCCAAGAAGCTAAACCCTTGTGTGGTTCGATCCGTTCTTCAACAACACCACCAGGTTGGAGTGTGTCCAAATGGCCATACTTTATGCTCGAGCTGTAAGACTAGAGTGCAGAACTGTTGCCCCACTTGTCGTAATGAGCTTGGAAATATAAGGTGCTTGGCACTGGAGAAAGTAGCAGAGTCCCTGGATCTTCCTTGTAGATATCAAATTTATGGTTGCCCTGATATATTCCATTACTACAGCAAGCTAAAGCATGAGAAAGTCTGTAAATATCGTCCTTACAACTGCCCTTATGTTGGAGCTGAATGTTCTGTTACTGGAGTTTGGAGATATCCTATTCCTTATGATGCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009894 GO:0009987 GO:0010506 GO:0016241 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0031323 GO:0031329 GO:0032446 GO:0033043 GO:0036211 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044087 GO:0044088 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046983 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051128 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901564 GO:1902115 GO:1902584 GO:2000070 GO:2000785

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

183

Amino Acids

20.92

Weight (kDa)

8.95

Isoelectric Point (pI)

44.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_ZnF	PF21361	122 - 172	2.1e-19	Sina, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61990
fragaria_vesca	FvH4_5g09340 FvH4_5g09340 FvH4_5g09340 FvH4_5g09340
malus_domestica	MD06G1131900.v1.1 MD14G1148300.v1.1
prunus_persica	Prupe.5G142900_v2.0.a1 Prupe.5G142900_v2.0.a1
pyrus_communis	pycom06g12350 pycom14g12300
rosa_chinensis	RchiOBHm_Chr1g0325241 RchiOBHm_Chr1g0325261 RchiOBHm_Chr2g0162681 RchiOBHm_Chr7g0188811 RchiOBHm_Chr7g0229441
rosa_laevigata	RLG00000004657 RLG00000028121 RLG00000028122 RLG00000031426 RLG00000035825
rosa_multiflora	Rmu_sc0001621.1_g000013 Rmu_sc0001918.1_g000006 Rmu_sc0004279.1_g000018 Rmu_sc0034360.1_g000001 Rmu_sc0034361.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266000 Rroxscaffold_5G00381140
rosa_rugosa	Rorug02G0360500 Rorug05G0369000 Rorug06G0494100 Rorug07G0156300
rosa_samantha	Rh1BG033100 Rh2CG348200 Rh2CG348300 Rh4AG001800 Rh4AG163800 Rh4BG001600 Rh4BG400000 Rh4BG400100 Rh4CG415000 Rh4CG415100 Rh6DG332400 Rh6DG332500 Rh7AG098900 Rh7AG408500 Rh7BG100600 Rh7CG102100 Rh7CG477400 Rh7DG100700 Rh7DG406300 Rh7DG406400 Rh7DG446700
rosa_wichuraiana	Rw0G022150 Rw7G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
AclWI	GGATC	2 cut(s)	219, 390
AcoI	YGGCCR	1 cut(s)	268
AcsI	RAATTY	1 cut(s)	402
AcuI	CTGAAG	1 cut(s)	170
AfaI	GTAC	1 cut(s)	142
AfiI	CCNNNNNNNGG	2 cut(s)	217, 491
AgsI	TTSAA	1 cut(s)	236
AjnI	CCWGG	2 cut(s)	246, 378
AluBI	AGCT	7 cut(s)	11, 183, 205, 288, 334, 442, 497
AluI	AGCT	7 cut(s)	11, 183, 205, 288, 334, 442, 497
Alw21I	GWGCWC	1 cut(s)	185
AlwI	GGATC	2 cut(s)	219, 390
Ama87I	CYCGRG	1 cut(s)	283
AoxI	GGCC	1 cut(s)	268
ApoI	RAATTY	1 cut(s)	402
AspS9I	GGNCC	1 cut(s)	73
AvaI	CYCGRG	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	73
BalI	TGGCCA	1 cut(s)	270
BanII	GRGCYC	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	185
BciT130I	CCWGG	2 cut(s)	248, 380
BfaI	CTAG	1 cut(s)	297
BfmI	CTRYAG	2 cut(s)	82, 433
Bme1390I	CCNGG	2 cut(s)	248, 380
Bme18I	GGWCC	1 cut(s)	73
BmeT110I	CYCGRG	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	74
BmrFI	CCNGG	2 cut(s)	248, 380
BmsI	GCATC	1 cut(s)	532
BpmI	CTGGAG	2 cut(s)	380, 534
BsaJI	CCNNGG	2 cut(s)	56, 378
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 491
Bse1I	ACTGG	2 cut(s)	363, 517
BseBI	CCWGG	2 cut(s)	248, 380
BseDI	CCNNGG	2 cut(s)	56, 378
BseGI	GGATG	1 cut(s)	121
BseLI	CCNNNNNNNGG	2 cut(s)	217, 491
BseNI	ACTGG	2 cut(s)	363, 517
BsgI	GTGCAG	1 cut(s)	323
BshFI	GGCC	1 cut(s)	270
BsiHKAI	GWGCWC	1 cut(s)	185
BsiHKCI	CYCGRG	1 cut(s)	283
BslFI	GGGAC	1 cut(s)	361
BslI	CCNNNNNNNGG	2 cut(s)	217, 491
BsmFI	GGGAC	1 cut(s)	361
BsnI	GGCC	1 cut(s)	270
BsoBI	CYCGRG	1 cut(s)	283
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	2 cut(s)	224, 382
BspANI	GGCC	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	74
BspMAI	CTGCAG	1 cut(s)	86
BspPI	GGATC	2 cut(s)	219, 390
BsrI	ACTGG	2 cut(s)	363, 517
BssECI	CCNNGG	2 cut(s)	56, 378
BssMI	GATC	2 cut(s)	224, 382
BssT1I	CCWWGG	1 cut(s)	56
Bst2UI	CCWGG	2 cut(s)	248, 380
Bst4CI	ACNGT	2 cut(s)	127, 311
BstC8I	GCNNGC	1 cut(s)	440
BstF5I	GGATG	1 cut(s)	121
BstKTI	GATC	2 cut(s)	227, 385
BstMBI	GATC	2 cut(s)	224, 382
BstNI	CCWGG	2 cut(s)	248, 380
BstSCI	CCNGG	2 cut(s)	246, 378
BstSFI	CTRYAG	2 cut(s)	82, 433
BstX2I	RGATCY	1 cut(s)	382
BstXI	CCANNNNNNTGG	1 cut(s)	251
BstYI	RGATCY	1 cut(s)	382
BsuRI	GGCC	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	121
BtsIMutI	CAGTG	2 cut(s)	132, 356
Cac8I	GCNNGC	1 cut(s)	440
Cfr13I	GGNCC	1 cut(s)	73
CsiI	ACCWGGT	1 cut(s)	246
Csp6I	GTAC	1 cut(s)	141
CviAII	CATG	2 cut(s)	17, 449
CviJI	RGCY	9 cut(s)	11, 61, 183, 205, 270, 288, 334, 442, 497
CviKI_1	RGCY	9 cut(s)	11, 61, 183, 205, 270, 288, 334, 442, 497
CviQI	GTAC	1 cut(s)	141
DpnI	GATC	2 cut(s)	226, 384
DpnII	GATC	2 cut(s)	224, 382
EaeI	YGGCCR	1 cut(s)	268
Ecl136II	GAGCTC	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	56
Eco24I	GRGCYC	1 cut(s)	185
Eco32I	GATATC	2 cut(s)	398, 527
Eco47I	GGWCC	1 cut(s)	73
Eco53kI	GAGCTC	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	170
Eco88I	CYCGRG	1 cut(s)	283
EcoICRI	GAGCTC	1 cut(s)	183
EcoRII	CCWGG	2 cut(s)	246, 378
EcoRV	GATATC	2 cut(s)	398, 527
EcoT14I	CCWWGG	1 cut(s)	56
EcoT22I	ATGCAT	1 cut(s)	547
EcoT38I	GRGCYC	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	56
FaeI	CATG	2 cut(s)	20, 452
FaqI	GGGAC	1 cut(s)	361
FatI	CATG	2 cut(s)	16, 448
FokI	GGATG	1 cut(s)	128
FriOI	GRGCYC	1 cut(s)	185
FspBI	CTAG	1 cut(s)	297
GsuI	CTGGAG	2 cut(s)	380, 534
HaeIII	GGCC	1 cut(s)	270
Hin1II	CATG	2 cut(s)	20, 452
HinfI	GANTC	3 cut(s)	67, 170, 374
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	3 cut(s)	39, 97, 150
Hpy8I	GTNNAC	1 cut(s)	76
HpyCH4III	ACNGT	2 cut(s)	127, 311
HpyCH4V	TGCA	4 cut(s)	32, 84, 304, 545
Hsp92II	CATG	2 cut(s)	20, 452
Kzo9I	GATC	2 cut(s)	224, 382
LmnI	GCTCC	1 cut(s)	494
LpnPI	CCDG	8 cut(s)	174, 233, 260, 344, 365, 392, 429, 498
LweI	GCATC	1 cut(s)	532
MabI	ACCWGGT	1 cut(s)	246
MaeI	CTAG	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	2 cut(s)	226, 384
MboI	GATC	2 cut(s)	224, 382
MboII	GAAGA	2 cut(s)	224, 377
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	1 cut(s)	185
MlsI	TGGCCA	1 cut(s)	270
MluCI	AATT	1 cut(s)	402
MluNI	TGGCCA	1 cut(s)	270
MlyI	GAGTC	2 cut(s)	179, 383
MmeI	TCCRAC	2 cut(s)	232, 472
MnlI	CCTC	2 cut(s)	106, 123
Mox20I	TGGCCA	1 cut(s)	270
Mph1103I	ATGCAT	1 cut(s)	547
MscI	TGGCCA	1 cut(s)	270
MseI	TTAA	1 cut(s)	550
Msp20I	TGGCCA	1 cut(s)	270
MspR9I	CCNGG	2 cut(s)	248, 380
MvaI	CCWGG	2 cut(s)	248, 380
NdeII	GATC	2 cut(s)	224, 382
NlaIII	CATG	2 cut(s)	20, 452
NlaIV	GGNNCC	1 cut(s)	74
NsiI	ATGCAT	1 cut(s)	547
PaeR7I	CTCGAG	1 cut(s)	283
PfeI	GAWTC	1 cut(s)	67
PleI	GAGTC	2 cut(s)	178, 382
PpsI	GAGTC	2 cut(s)	178, 382
PsiI	TTATAA	1 cut(s)	90
Psp124BI	GAGCTC	1 cut(s)	185
Psp6I	CCWGG	2 cut(s)	246, 378
PspGI	CCWGG	2 cut(s)	246, 378
PspN4I	GGNNCC	1 cut(s)	74
PspPI	GGNCC	1 cut(s)	73
PspXI	VCTCGAGB	1 cut(s)	283
PstI	CTGCAG	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	382
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
SacI	GAGCTC	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	550
Sau3AI	GATC	2 cut(s)	224, 382
Sau96I	GGNCC	1 cut(s)	73
SchI	GAGTC	2 cut(s)	179, 383
ScrFI	CCNGG	2 cut(s)	248, 380
SduI	GDGCHC	1 cut(s)	185
SexAI	ACCWGGT	1 cut(s)	246
SfaNI	GCATC	1 cut(s)	532
SfcI	CTRYAG	2 cut(s)	82, 433
Sfr274I	CTCGAG	1 cut(s)	283
SinI	GGWCC	1 cut(s)	73
SlaI	CTCGAG	1 cut(s)	283
SmlI	CTYRAG	1 cut(s)	283
SmoI	CTYRAG	1 cut(s)	283
Sse9I	AATT	1 cut(s)	402
SspMI	CTAG	1 cut(s)	297
SstI	GAGCTC	1 cut(s)	185
StyD4I	CCNGG	2 cut(s)	246, 378
StyI	CCWWGG	1 cut(s)	56
TaaI	ACNGT	2 cut(s)	127, 311
TaqI	TCGA	2 cut(s)	223, 284
TasI	AATT	1 cut(s)	402
TfiI	GAWTC	1 cut(s)	67
Tru1I	TTAA	1 cut(s)	550
Tru9I	TTAA	1 cut(s)	550
TscAI	CASTG	2 cut(s)	132, 363
TspDTI	ATGAA	1 cut(s)	135
TspGWI	ACGGA	2 cut(s)	163, 217
TspRI	CASTG	2 cut(s)	132, 363
VpaK11BI	GGWCC	1 cut(s)	73
XapI	RAATTY	1 cut(s)	402
XhoI	CTCGAG	1 cut(s)	283
XspI	CTAG	1 cut(s)	297
Zsp2I	ATGCAT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.